RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CFAP54Q96N23 3096 aa2.32□□□□□ -2.04
SCN1A-220ENST00000641603 PRUNE2Q8WUY3 3088 aa2.32□□□□□ -2.04
SCN1A-220ENST00000641603 LRBAP50851 2863 aa2.31□□□□□ -2.04
SCN1A-220ENST00000641603 HIVEP1P15822 2718 aa2.31□□□□□ -2.04
SCN1A-220ENST00000641603 KALRNO60229 2985 aa2.3□□□□□ -2.04
SCN1A-220ENST00000641603 FRYQ5TBA9 3013 aa2.3□□□□□ -2.04
SCN1A-220ENST00000641603 CHD9Q3L8U1 2897 aa2.29□□□□□ -2.04
SCN1A-220ENST00000641603 KRTAP10-6P60371 365 aaPredicted RBP2.29□□□□□ -2.04
SCN1A-220ENST00000641603 TNRC18O15417 2968 aaPredicted RBP2.29□□□□□ -2.04
SCN1A-220ENST00000641603 PCNTO95613 3336 aa2.29□□□□□ -2.04
SCN1A-220ENST00000641603 USP34Q70CQ2 3546 aa2.29□□□□□ -2.04
SCN1A-220ENST00000641603 TENM3Q9P273 2699 aa2.28□□□□□ -2.04
SCN1A-220ENST00000641603 ZZEF1O43149 2961 aa2.28□□□□□ -2.04
SCN1A-220ENST00000641603 KRTAP3-1Q9BYR8 98 aa2.27□□□□□ -2.05
SCN1A-220ENST00000641603 CRYBG3Q68DQ2 2970 aa2.27□□□□□ -2.05
SCN1A-220ENST00000641603 NBEAL2Q6ZNJ1 2754 aa2.25□□□□□ -2.05
SCN1A-220ENST00000641603 TRIOO75962 3097 aa2.25□□□□□ -2.05
SCN1A-220ENST00000641603 ASH1LQ9NR48 2969 aaKnown RBP2.24□□□□□ -2.05
SCN1A-220ENST00000641603 CELSR1Q9NYQ6 3014 aa2.24□□□□□ -2.05
SCN1A-220ENST00000641603 TENM4Q6N022 2769 aa2.24□□□□□ -2.05
SCN1A-220ENST00000641603 TENM2Q9NT68 2774 aa2.23□□□□□ -2.05
SCN1A-220ENST00000641603 TGP01266 2768 aa2.22□□□□□ -2.05
SCN1A-220ENST00000641603 MXRA5Q9NR99 2828 aa2.22□□□□□ -2.05
SCN1A-220ENST00000641603 PDZD2O15018 2839 aa2.22□□□□□ -2.05
SCN1A-220ENST00000641603 CELSR2Q9HCU4 2923 aa2.21□□□□□ -2.06
SCN1A-220ENST00000641603 LAMA1P25391 3075 aa2.21□□□□□ -2.06
SCN1A-220ENST00000641603 UTRNP46939 3433 aa2.21□□□□□ -2.06
SCN1A-220ENST00000641603 KRTAP3-2Q9BYR7 98 aa2.2□□□□□ -2.06
SCN1A-220ENST00000641603 DMXL2Q8TDJ6 3036 aa2.2□□□□□ -2.06
SCN1A-220ENST00000641603 COL12A1Q99715 3063 aa2.19□□□□□ -2.06
SCN1A-220ENST00000641603 DCHS2Q6V1P9 2916 aa2.18□□□□□ -2.06
SCN1A-220ENST00000641603 BOD1L1Q8NFC6 3051 aa2.17□□□□□ -2.06
SCN1A-220ENST00000641603 MKI67P46013 3256 aaKnown RBP2.17□□□□□ -2.06
SCN1A-220ENST00000641603 TACC2O95359 2948 aa2.17□□□□□ -2.06
SCN1A-220ENST00000641603 RANBP2P49792 3224 aaKnown RBP2.17□□□□□ -2.06
SCN1A-220ENST00000641603 REV3LO60673 3130 aa2.15□□□□□ -2.06
SCN1A-220ENST00000641603 KRTAP3-3Q9BYR6 98 aa2.15□□□□□ -2.07
SCN1A-220ENST00000641603 ADGRG4Q8IZF6 3080 aa2.15□□□□□ -2.07
SCN1A-220ENST00000641603 FREM2Q5SZK8 3169 aa2.14□□□□□ -2.07
SCN1A-220ENST00000641603 HTTP42858 3142 aa2.14□□□□□ -2.07
SCN1A-220ENST00000641603 NBPF19A0A087WUL8 3843 aa2.14□□□□□ -2.07
SCN1A-220ENST00000641603 ZANQ9Y493 2812 aa2.12□□□□□ -2.07
SCN1A-220ENST00000641603 COL7A1Q02388 2944 aa2.12□□□□□ -2.07
SCN1A-220ENST00000641603 XIRP2A4UGR9 3374 aa2.12□□□□□ -2.07
SCN1A-220ENST00000641603 PKD1L1Q8TDX9 2849 aa2.11□□□□□ -2.07
SCN1A-220ENST00000641603 AKAP9Q99996 3911 aa2.11□□□□□ -2.07
SCN1A-220ENST00000641603 KRTAP19-4Q3LI73 84 aa2.11□□□□□ -2.07
SCN1A-220ENST00000641603 ATMQ13315 3056 aa2.11□□□□□ -2.07
SCN1A-220ENST00000641603 LAMA3Q16787 3333 aa2.09□□□□□ -2.07
SCN1A-220ENST00000641603 A0A1B0GVY2 172 aa2.09□□□□□ -2.08
SCN1A-220ENST00000641603 DMXL1Q9Y485 3027 aa2.09□□□□□ -2.08
SCN1A-220ENST00000641603 VWFP04275 2813 aa2.08□□□□□ -2.08
SCN1A-220ENST00000641603 KRTAP10-10P60014 251 aa2.08□□□□□ -2.08
SCN1A-220ENST00000641603 UNC80Q8N2C7 3258 aa2.08□□□□□ -2.08
SCN1A-220ENST00000641603 FBN2P35556 2912 aa2.07□□□□□ -2.08
SCN1A-220ENST00000641603 COL6A3P12111 3177 aa2.06□□□□□ -2.08
SCN1A-220ENST00000641603 ZFHX3Q15911 3703 aa2.06□□□□□ -2.08
SCN1A-220ENST00000641603 CELSR3Q9NYQ7 3312 aa2.05□□□□□ -2.08
SCN1A-220ENST00000641603 FBN1P35555 2871 aaKnown RBP2.04□□□□□ -2.08
SCN1A-220ENST00000641603 DNAH1Q9P2D7 4330 aa2.04□□□□□ -2.08
SCN1A-220ENST00000641603 TRRAPQ9Y4A5 3859 aa2.04□□□□□ -2.08
SCN1A-220ENST00000641603 HRNRQ86YZ3 2850 aaPredicted RBP2.04□□□□□ -2.08
SCN1A-220ENST00000641603 SPEGQ15772 3267 aa2.03□□□□□ -2.08
SCN1A-220ENST00000641603 KRTAP10-12P60413 245 aa2.03□□□□□ -2.08
SCN1A-220ENST00000641603 KRTAP12-3P60328 96 aa2.03□□□□□ -2.09
SCN1A-220ENST00000641603 EYSQ5T1H1 3165 aa2.03□□□□□ -2.09
SCN1A-220ENST00000641603 DNAH14Q0VDD8 3507 aa2.02□□□□□ -2.09
SCN1A-220ENST00000641603 SRRM2Q9UQ35 2752 aaKnown RBP2.01□□□□□ -2.09
SCN1A-220ENST00000641603 CMYA5Q8N3K9 4069 aa2□□□□□ -2.09
SCN1A-220ENST00000641603 CFAP47Q6ZTR5 3102 aa1.99□□□□□ -2.09
SCN1A-220ENST00000641603 BRCA2P51587 3418 aa1.98□□□□□ -2.09
SCN1A-220ENST00000641603 SPRR5A0A1B0GTR4 108 aa1.97□□□□□ -2.09
SCN1A-220ENST00000641603 VCANP13611 3396 aa1.97□□□□□ -2.09
SCN1A-220ENST00000641603 DNAH6Q9C0G6 4158 aa1.97□□□□□ -2.09
SCN1A-220ENST00000641603 CDH23Q9H251 3354 aa1.97□□□□□ -2.09
SCN1A-220ENST00000641603 SPTBN5Q9NRC6 3674 aaKnown RBP1.95□□□□□ -2.1
SCN1A-220ENST00000641603 FBN3Q75N90 2809 aa1.95□□□□□ -2.1
SCN1A-220ENST00000641603 ALMS1Q8TCU4 4167 aa1.95□□□□□ -2.1
SCN1A-220ENST00000641603 OTOGQ6ZRI0 2925 aa1.95□□□□□ -2.1
SCN1A-220ENST00000641603 SZT2Q5T011 3432 aa1.95□□□□□ -2.1
SCN1A-220ENST00000641603 MEGF8Q7Z7M0 2845 aa1.95□□□□□ -2.1
SCN1A-220ENST00000641603 DNAH7Q8WXX0 4024 aa1.94□□□□□ -2.1
SCN1A-220ENST00000641603 KRTAP10-4P60372 401 aaPredicted RBP1.94□□□□□ -2.1
SCN1A-220ENST00000641603 LCE3AQ5TA76 89 aa1.93□□□□□ -2.1
SCN1A-220ENST00000641603 LOC400499M0QZD8 3231 aa1.92□□□□□ -2.1
SCN1A-220ENST00000641603 KRTAP8-1Q8IUC2 63 aa1.92□□□□□ -2.1
SCN1A-220ENST00000641603 MT1HL1P0DM35 61 aa1.91□□□□□ -2.1
SCN1A-220ENST00000641603 BSNQ9UPA5 3926 aa1.88□□□□□ -2.11
SCN1A-220ENST00000641603 SPENQ96T58 3664 aaKnown RBP1.87□□□□□ -2.11
SCN1A-220ENST00000641603 VPS13BQ7Z7G8 4022 aa1.87□□□□□ -2.11
SCN1A-220ENST00000641603 DNAH3Q8TD57 4116 aa1.87□□□□□ -2.11
SCN1A-220ENST00000641603 SPRR2GQ9BYE4 73 aa1.87□□□□□ -2.11
SCN1A-220ENST00000641603 ZFHX4Q86UP3 3567 aa1.86□□□□□ -2.11
SCN1A-220ENST00000641603 ANK2Q01484 3957 aa1.86□□□□□ -2.11
SCN1A-220ENST00000641603 FRAS1Q86XX4 4008 aa1.85□□□□□ -2.11
SCN1A-220ENST00000641603 VPS13CQ709C8 3753 aa1.84□□□□□ -2.11
SCN1A-220ENST00000641603 PRKDCP78527 4128 aaKnown RBP1.83□□□□□ -2.12
SCN1A-220ENST00000641603 HECTD4Q9Y4D8 3996 aa1.83□□□□□ -2.12
SCN1A-220ENST00000641603 DCHS1Q96JQ0 3298 aa1.83□□□□□ -2.12
SCN1A-220ENST00000641603 HUWE1Q7Z6Z7 4374 aaKnown RBP1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms