RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 SPINK6Q6UWN8 80 aa12.6□□□□□ -0.39
CLN6-224ENST00000638076 SACSQ9NZJ4 4579 aa12.6□□□□□ -0.39
CLN6-224ENST00000638076 TRAV22A0A0B4J277 110 aa12.6□□□□□ -0.39
CLN6-224ENST00000638076 H3BPC8 53 aa12.59□□□□□ -0.39
CLN6-224ENST00000638076 KRTAP13-2Q52LG2 175 aa12.57□□□□□ -0.4
CLN6-224ENST00000638076 NOTCH2NLQ7Z3S9 236 aa12.56□□□□□ -0.4
CLN6-224ENST00000638076 VPS13BQ7Z7G8 4022 aa12.56□□□□□ -0.4
CLN6-224ENST00000638076 C1orf64Q8NEQ6 169 aa12.54□□□□□ -0.4
CLN6-224ENST00000638076 TP53AIP1Q9HCN2 124 aa12.54□□□□□ -0.4
CLN6-224ENST00000638076 FAM229BQ4G0N7 80 aa12.53□□□□□ -0.4
CLN6-224ENST00000638076 NDUFS5O43920 106 aa12.52□□□□□ -0.41
CLN6-224ENST00000638076 MRPL34Q9BQ48 92 aaKnown RBP12.52□□□□□ -0.41
CLN6-224ENST00000638076 PRR4Q16378 134 aa12.51□□□□□ -0.41
CLN6-224ENST00000638076 KRTAP1-4P0C5Y4 121 aa12.5□□□□□ -0.41
CLN6-224ENST00000638076 PKHD1P08F94 4074 aa12.5□□□□□ -0.41
CLN6-224ENST00000638076 CYP4F30PQ9H0H9 118 aa12.46□□□□□ -0.41
CLN6-224ENST00000638076 BRK1Q8WUW1 75 aa12.41□□□□□ -0.42
CLN6-224ENST00000638076 PLA2G1BP04054 148 aaKnown RBP12.4□□□□□ -0.42
CLN6-224ENST00000638076 SPANXA2-OT1Q8N9U9 137 aa12.4□□□□□ -0.42
CLN6-224ENST00000638076 C1orf195Q5TG92 126 aa12.39□□□□□ -0.43
CLN6-224ENST00000638076 MPLKIPQ8TAP9 179 aa12.39□□□□□ -0.43
CLN6-224ENST00000638076 C8orf87E5RJ46 101 aa12.37□□□□□ -0.43
CLN6-224ENST00000638076 DYNC1H1Q14204 4646 aaKnown RBP12.36□□□□□ -0.43
CLN6-224ENST00000638076 PCOTHQ58A44 107 aa12.34□□□□□ -0.43
CLN6-224ENST00000638076 TYMSOSQ8TAI1 123 aa12.33□□□□□ -0.44
CLN6-224ENST00000638076 LIMD2Q9BT23 127 aa12.33□□□□□ -0.44
CLN6-224ENST00000638076 A0A1B0GVY2 172 aa12.32□□□□□ -0.44
CLN6-224ENST00000638076 LINC00313P59037 77 aa12.32□□□□□ -0.44
CLN6-224ENST00000638076 SMR3BP02814 79 aaPredicted RBP12.31□□□□□ -0.44
CLN6-224ENST00000638076 C4orf48Q5BLP8 95 aa12.29□□□□□ -0.44
CLN6-224ENST00000638076 Q5W150 140 aa12.29□□□□□ -0.44
CLN6-224ENST00000638076 IGLV7-46A0A075B6I9 117 aa12.28□□□□□ -0.44
CLN6-224ENST00000638076 KRTAP13-3Q3SY46 172 aa12.25□□□□□ -0.45
CLN6-224ENST00000638076 RYR2Q92736 4967 aa12.24□□□□□ -0.45
CLN6-224ENST00000638076 SPINK1P00995 79 aa12.24□□□□□ -0.45
CLN6-224ENST00000638076 PRR26Q8N8Z3 221 aa12.23□□□□□ -0.45
CLN6-224ENST00000638076 LOC101927531A0A1B0GV80 90 aa12.21□□□□□ -0.45
CLN6-224ENST00000638076 Q8N9P0 234 aaPredicted RBP12.21□□□□□ -0.45
CLN6-224ENST00000638076 APOBP04114 4563 aaKnown RBP12.21□□□□□ -0.45
CLN6-224ENST00000638076 Q1T7F1 81 aa12.2□□□□□ -0.46
CLN6-224ENST00000638076 KRTAP16-1A8MUX0 517 aa12.17□□□□□ -0.46
CLN6-224ENST00000638076 FAT1Q14517 4588 aa12.17□□□□□ -0.46
CLN6-224ENST00000638076 LINC00304Q8N9R0 145 aa12.16□□□□□ -0.46
CLN6-224ENST00000638076 KMT2CQ8NEZ4 4911 aaKnown RBP12.16□□□□□ -0.46
CLN6-224ENST00000638076 FAM229AH3BQW9 127 aa12.14□□□□□ -0.47
CLN6-224ENST00000638076 V9GYY9 64 aa12.14□□□□□ -0.47
CLN6-224ENST00000638076 KRTAP10-4P60372 401 aaPredicted RBP12.13□□□□□ -0.47
CLN6-224ENST00000638076 COA5Q86WW8 74 aa12.13□□□□□ -0.47
CLN6-224ENST00000638076 RETNLBQ9BQ08 111 aa12.13□□□□□ -0.47
CLN6-224ENST00000638076 RPS29P62273 56 aaKnown RBP12.09□□□□□ -0.47
CLN6-224ENST00000638076 SPAG11AQ6PDA7 123 aa12.09□□□□□ -0.47
CLN6-224ENST00000638076 PSPHP1O15172 72 aa12.02□□□□□ -0.49
CLN6-224ENST00000638076 HRES1P13985 223 aa12.01□□□□□ -0.49
CLN6-224ENST00000638076 IGKV2-30P06310 120 aa12□□□□□ -0.49
CLN6-224ENST00000638076 PKHD1L1Q86WI1 4243 aa11.99□□□□□ -0.49
CLN6-224ENST00000638076 SEC61GP60059 68 aa11.96□□□□□ -0.49
CLN6-224ENST00000638076 A8MUN3 132 aa11.94□□□□□ -0.5
CLN6-224ENST00000638076 PMAIP1Q13794 54 aa11.94□□□□□ -0.5
CLN6-224ENST00000638076 IGKV2D-30A0A075B6S6 120 aa11.9□□□□□ -0.5
CLN6-224ENST00000638076 ACYP2P14621 99 aa11.88□□□□□ -0.51
CLN6-224ENST00000638076 DMAC1Q96GE9 116 aa11.87□□□□□ -0.51
CLN6-224ENST00000638076 Q5VV11 94 aa11.87□□□□□ -0.51
CLN6-224ENST00000638076 PRR15LQ9BU68 103 aa11.85□□□□□ -0.51
CLN6-224ENST00000638076 C9orf92A6NGG3 77 aa11.83□□□□□ -0.51
CLN6-224ENST00000638076 RYR3Q15413 4870 aa11.81□□□□□ -0.52
CLN6-224ENST00000638076 LINC01558Q9Y6Z2 57 aa11.78□□□□□ -0.52
CLN6-224ENST00000638076 HSPG2P98160 4391 aa11.77□□□□□ -0.53
CLN6-224ENST00000638076 Q5VSD8 79 aa11.75□□□□□ -0.53
CLN6-224ENST00000638076 A8MU10 97 aa11.75□□□□□ -0.53
CLN6-224ENST00000638076 CHKB-CPT1BH3BT56 60 aa11.75□□□□□ -0.53
CLN6-224ENST00000638076 C20orf166-AS1Q96NR2 134 aa11.74□□□□□ -0.53
CLN6-224ENST00000638076 C7orf65Q6ZTY9 151 aa11.74□□□□□ -0.53
CLN6-224ENST00000638076 A8MUU9 505 aa11.72□□□□□ -0.53
CLN6-224ENST00000638076 Q75L30 129 aa11.71□□□□□ -0.53
CLN6-224ENST00000638076 Q8N1X5 172 aa11.71□□□□□ -0.54
CLN6-224ENST00000638076 LRP1Q07954 4544 aaKnown RBP11.71□□□□□ -0.54
CLN6-224ENST00000638076 TNXBP22105 4242 aa11.68□□□□□ -0.54
CLN6-224ENST00000638076 FLG2Q5D862 2391 aaPredicted RBP11.68□□□□□ -0.54
CLN6-224ENST00000638076 RYR1P21817 5038 aa11.67□□□□□ -0.54
CLN6-224ENST00000638076 KRTAP10-8P60410 259 aa11.65□□□□□ -0.54
CLN6-224ENST00000638076 FAT3Q8TDW7 4589 aa11.62□□□□□ -0.55
CLN6-224ENST00000638076 ATP11AUNQ6ZP68 121 aa11.6□□□□□ -0.55
CLN6-224ENST00000638076 A6NED7 52 aa11.6□□□□□ -0.55
CLN6-224ENST00000638076 LCA10Q71F78 164 aa11.6□□□□□ -0.55
CLN6-224ENST00000638076 KTN1-AS1Q86SY8 53 aa11.59□□□□□ -0.55
CLN6-224ENST00000638076 KRTAP17-1Q9BYP8 105 aa11.58□□□□□ -0.56
CLN6-224ENST00000638076 SPTSSBQ8NFR3 76 aa11.56□□□□□ -0.56
CLN6-224ENST00000638076 CDC42SE1Q9NRR8 79 aa11.53□□□□□ -0.56
CLN6-224ENST00000638076 KIAA1109Q2LD37 5005 aa11.5□□□□□ -0.57
CLN6-224ENST00000638076 SPINK7P58062 85 aa11.49□□□□□ -0.57
CLN6-224ENST00000638076 A6NN06 94 aa11.49□□□□□ -0.57
CLN6-224ENST00000638076 A0A1B0GU69 56 aa11.45□□□□□ -0.58
CLN6-224ENST00000638076 RBM12B-AS1Q9P1G2 102 aa11.4□□□□□ -0.58
CLN6-224ENST00000638076 DMBT1Q9UGM3 2413 aaPredicted RBP11.4□□□□□ -0.58
CLN6-224ENST00000638076 MYCBP2O75592 4640 aa11.39□□□□□ -0.59
CLN6-224ENST00000638076 KRTAP3-1Q9BYR8 98 aa11.38□□□□□ -0.59
CLN6-224ENST00000638076 MT1HL1P0DM35 61 aa11.37□□□□□ -0.59
CLN6-224ENST00000638076 EPPK1P58107 5090 aaKnown RBP11.37□□□□□ -0.59
CLN6-224ENST00000638076 RPL37P61927 97 aaKnown RBP11.31□□□□□ -0.6
CLN6-224ENST00000638076 XP32Q5T750 250 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms