RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 NREPQ16612 68 aa4.19□□□□□ -1.74
CIITA-214ENST00000636238 Q6Q795 121 aa4.19□□□□□ -1.74
CIITA-214ENST00000636238 LINC00643Q86TS7 51 aa4.19□□□□□ -1.74
CIITA-214ENST00000636238 SIGMAR1Q99720 223 aa4.19□□□□□ -1.74
CIITA-214ENST00000636238 DEFB116Q30KQ4 102 aa4.18□□□□□ -1.74
CIITA-214ENST00000636238 KRTAP13-3Q3SY46 172 aa4.18□□□□□ -1.74
CIITA-214ENST00000636238 A0A1B0GW54 56 aa4.17□□□□□ -1.74
CIITA-214ENST00000636238 BPY2O14599 106 aa4.15□□□□□ -1.75
CIITA-214ENST00000636238 LCE2BO14633 110 aa4.15□□□□□ -1.75
CIITA-214ENST00000636238 CD164Q04900 197 aa4.15□□□□□ -1.75
CIITA-214ENST00000636238 RPS29P62273 56 aaKnown RBP4.14□□□□□ -1.75
CIITA-214ENST00000636238 Q8N9L7 120 aa4.14□□□□□ -1.75
CIITA-214ENST00000636238 SPINK1P00995 79 aa4.13□□□□□ -1.75
CIITA-214ENST00000636238 HIST1H4AP62805 103 aaKnown RBP4.13□□□□□ -1.75
CIITA-214ENST00000636238 Q96NJ1 140 aa4.13□□□□□ -1.75
CIITA-214ENST00000636238 LINC00472Q9H8W2 130 aa4.13□□□□□ -1.75
CIITA-214ENST00000636238 A0A087WVE0 104 aa4.12□□□□□ -1.75
CIITA-214ENST00000636238 DSCR10P59022 87 aa4.12□□□□□ -1.75
CIITA-214ENST00000636238 CXCL6P80162 114 aa4.12□□□□□ -1.75
CIITA-214ENST00000636238 XP32Q5T750 250 aa4.12□□□□□ -1.75
CIITA-214ENST00000636238 ATP5EP2Q5VTU8 51 aa4.12□□□□□ -1.75
CIITA-214ENST00000636238 SS18L2Q9UHA2 77 aa4.12□□□□□ -1.75
CIITA-214ENST00000636238 H3BS24 57 aa4.11□□□□□ -1.75
CIITA-214ENST00000636238 IGKV4-1P06312 121 aa4.11□□□□□ -1.75
CIITA-214ENST00000636238 LCE2CQ5TA81 110 aa4.11□□□□□ -1.75
CIITA-214ENST00000636238 KRTAP4-1Q9BYQ7 146 aa4.11□□□□□ -1.75
CIITA-214ENST00000636238 K7EQZ3 153 aa4.09□□□□□ -1.75
CIITA-214ENST00000636238 MT1HP80294 61 aa4.09□□□□□ -1.75
CIITA-214ENST00000636238 C1orf195Q5TG92 126 aa4.09□□□□□ -1.75
CIITA-214ENST00000636238 IMUPQ9GZP8 106 aa4.09□□□□□ -1.75
CIITA-214ENST00000636238 J3KT08 172 aa4.08□□□□□ -1.76
CIITA-214ENST00000636238 LORP23490 312 aaPredicted RBP4.08□□□□□ -1.76
CIITA-214ENST00000636238 LIMD2Q9BT23 127 aa4.08□□□□□ -1.76
CIITA-214ENST00000636238 FAM236AA0A1B0GUQ0 79 aa4.07□□□□□ -1.76
CIITA-214ENST00000636238 FAM236BA0A1B0GV22 79 aa4.07□□□□□ -1.76
CIITA-214ENST00000636238 A8MWP4 228 aa4.07□□□□□ -1.76
CIITA-214ENST00000636238 KRTAP19-2Q3LHN2 52 aa4.07□□□□□ -1.76
CIITA-214ENST00000636238 Q5XG85 94 aa4.07□□□□□ -1.76
CIITA-214ENST00000636238 IGHV6-1A0A0B4J1U7 121 aa4.06□□□□□ -1.76
CIITA-214ENST00000636238 KRTAP9-7A8MTY7 169 aa4.06□□□□□ -1.76
CIITA-214ENST00000636238 KRTAP10-6P60371 365 aaPredicted RBP4.06□□□□□ -1.76
CIITA-214ENST00000636238 PRR15Q8IV56 129 aa4.06□□□□□ -1.76
CIITA-214ENST00000636238 A0A1B0GVX0 72 aa4.05□□□□□ -1.76
CIITA-214ENST00000636238 NDUFB1O75438 58 aa4.05□□□□□ -1.76
CIITA-214ENST00000636238 WFDC13Q8IUB5 93 aa4.05□□□□□ -1.76
CIITA-214ENST00000636238 SCGB1A1P11684 91 aa4.04□□□□□ -1.76
CIITA-214ENST00000636238 NOTCH2NLQ7Z3S9 236 aa4.04□□□□□ -1.76
CIITA-214ENST00000636238 MMP24-AS1A0A0U1RRL7 71 aa4.03□□□□□ -1.76
CIITA-214ENST00000636238 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.03□□□□□ -1.76
CIITA-214ENST00000636238 C8orf17Q9NRJ1 99 aa4.03□□□□□ -1.76
CIITA-214ENST00000636238 HCG22E2RYF7 251 aa4.02□□□□□ -1.77
CIITA-214ENST00000636238 CASC2Q6XLA1 102 aa4.01□□□□□ -1.77
CIITA-214ENST00000636238 hDV103S1A0JD37 113 aa4□□□□□ -1.77
CIITA-214ENST00000636238 LINC00313P59037 77 aa4□□□□□ -1.77
CIITA-214ENST00000636238 M0R2T5 61 aa3.99□□□□□ -1.77
CIITA-214ENST00000636238 ATOX1O00244 68 aa3.99□□□□□ -1.77
CIITA-214ENST00000636238 ANAPC13Q9BS18 74 aa3.99□□□□□ -1.77
CIITA-214ENST00000636238 SSPOA2VEC9 5147 aa3.99□□□□□ -1.77
CIITA-214ENST00000636238 C9orf92A6NGG3 77 aa3.98□□□□□ -1.77
CIITA-214ENST00000636238 C8orf87E5RJ46 101 aa3.98□□□□□ -1.77
CIITA-214ENST00000636238 PCOTHQ58A44 107 aa3.98□□□□□ -1.77
CIITA-214ENST00000636238 FLGP20930 4061 aaPredicted RBP3.98□□□□□ -1.77
CIITA-214ENST00000636238 USH2AO75445 5202 aa3.98□□□□□ -1.77
CIITA-214ENST00000636238 PCP4P48539 62 aa3.97□□□□□ -1.77
CIITA-214ENST00000636238 TMEM254Q8TBM7 123 aa3.97□□□□□ -1.77
CIITA-214ENST00000636238 MRPL34Q9BQ48 92 aaKnown RBP3.97□□□□□ -1.77
CIITA-214ENST00000636238 TRAV7A0A075B6U4 112 aa3.96□□□□□ -1.78
CIITA-214ENST00000636238 NDUFS5O43920 106 aa3.96□□□□□ -1.78
CIITA-214ENST00000636238 OCR1Q9BZK8 76 aa3.96□□□□□ -1.78
CIITA-214ENST00000636238 KRTAP16-1A8MUX0 517 aa3.95□□□□□ -1.78
CIITA-214ENST00000636238 COX6B2Q6YFQ2 88 aa3.95□□□□□ -1.78
CIITA-214ENST00000636238 SERP2Q8N6R1 65 aa3.95□□□□□ -1.78
CIITA-214ENST00000636238 CCDC179H3BU77 68 aa3.94□□□□□ -1.78
CIITA-214ENST00000636238 COX7CP15954 63 aa3.93□□□□□ -1.78
CIITA-214ENST00000636238 SMIM20Q8N5G0 67 aa3.93□□□□□ -1.78
CIITA-214ENST00000636238 FCGBPQ9Y6R7 5405 aaPredicted RBP3.93□□□□□ -1.78
CIITA-214ENST00000636238 UQCRQO14949 82 aa3.91□□□□□ -1.78
CIITA-214ENST00000636238 Q8N9P0 234 aaPredicted RBP3.91□□□□□ -1.78
CIITA-214ENST00000636238 H0Y9P7 68 aa3.9□□□□□ -1.79
CIITA-214ENST00000636238 RPL37P61927 97 aaKnown RBP3.9□□□□□ -1.79
CIITA-214ENST00000636238 Q5W150 140 aa3.9□□□□□ -1.79
CIITA-214ENST00000636238 C20orf197Q8N268 126 aa3.9□□□□□ -1.79
CIITA-214ENST00000636238 SNURFQ9Y675 71 aa3.9□□□□□ -1.79
CIITA-214ENST00000636238 TP53AIP1Q9HCN2 124 aa3.89□□□□□ -1.79
CIITA-214ENST00000636238 A8MUU9 505 aa3.88□□□□□ -1.79
CIITA-214ENST00000636238 C5orf47Q569G3 176 aa3.88□□□□□ -1.79
CIITA-214ENST00000636238 TRAV22A0A0B4J277 110 aa3.87□□□□□ -1.79
CIITA-214ENST00000636238 MP68P56378 58 aa3.87□□□□□ -1.79
CIITA-214ENST00000636238 LINC00208Q96KT6 92 aa3.87□□□□□ -1.79
CIITA-214ENST00000636238 C20orf166-AS1Q96NR2 134 aa3.87□□□□□ -1.79
CIITA-214ENST00000636238 CYSTM1Q9H1C7 97 aa3.87□□□□□ -1.79
CIITA-214ENST00000636238 MACF1Q9UPN3 7388 aaKnown RBP3.86□□□□□ -1.79
CIITA-214ENST00000636238 Q75L30 129 aa3.85□□□□□ -1.79
CIITA-214ENST00000636238 C1orf64Q8NEQ6 169 aa3.85□□□□□ -1.79
CIITA-214ENST00000636238 ZCCHC13Q8WW36 166 aaKnown RBP3.85□□□□□ -1.79
CIITA-214ENST00000636238 KRTAP9-8Q9BYQ0 159 aa3.83□□□□□ -1.8
CIITA-214ENST00000636238 SYNE2Q8WXH0 6885 aaKnown RBP3.82□□□□□ -1.8
CIITA-214ENST00000636238 KLKP1Q107X0 134 aa3.82□□□□□ -1.8
CIITA-214ENST00000636238 IGKV2D-30A0A075B6S6 120 aa3.81□□□□□ -1.8
CIITA-214ENST00000636238 H3BPC8 53 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms