RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 ATP5EP56381 51 aaPredicted RBP9.54□□□□□ -0.88
LDB3-208ENST00000623007 C8orf17Q9NRJ1 99 aa9.54□□□□□ -0.88
LDB3-208ENST00000623007 H7BZZ5 65 aa9.51□□□□□ -0.89
LDB3-208ENST00000623007 IGHV6-1A0A0B4J1U7 121 aa9.5□□□□□ -0.89
LDB3-208ENST00000623007 SNURFQ9Y675 71 aa9.5□□□□□ -0.89
LDB3-208ENST00000623007 CYSTM1Q9H1C7 97 aa9.48□□□□□ -0.89
LDB3-208ENST00000623007 RPS28P62857 69 aaKnown RBP9.47□□□□□ -0.89
LDB3-208ENST00000623007 MRPL34Q9BQ48 92 aaKnown RBP9.47□□□□□ -0.89
LDB3-208ENST00000623007 FAM229AH3BQW9 127 aa9.46□□□□□ -0.89
LDB3-208ENST00000623007 SMR3BP02814 79 aaPredicted RBP9.46□□□□□ -0.89
LDB3-208ENST00000623007 FAM236DA0A1B0GTK5 79 aa9.45□□□□□ -0.9
LDB3-208ENST00000623007 FAM236CP0DP71 79 aa9.45□□□□□ -0.9
LDB3-208ENST00000623007 LINC00304Q8N9R0 145 aa9.44□□□□□ -0.9
LDB3-208ENST00000623007 TRAV22A0A0B4J277 110 aa9.43□□□□□ -0.9
LDB3-208ENST00000623007 C1orf195Q5TG92 126 aa9.43□□□□□ -0.9
LDB3-208ENST00000623007 KRTAP10-4P60372 401 aaPredicted RBP9.42□□□□□ -0.9
LDB3-208ENST00000623007 ZCCHC13Q8WW36 166 aaKnown RBP9.42□□□□□ -0.9
LDB3-208ENST00000623007 H0Y9P7 68 aa9.41□□□□□ -0.9
LDB3-208ENST00000623007 LINC00313P59037 77 aa9.39□□□□□ -0.91
LDB3-208ENST00000623007 PRR26Q8N8Z3 221 aa9.38□□□□□ -0.91
LDB3-208ENST00000623007 NDUFS5O43920 106 aa9.37□□□□□ -0.91
LDB3-208ENST00000623007 LINC00208Q96KT6 92 aa9.36□□□□□ -0.91
LDB3-208ENST00000623007 LRP1BQ9NZR2 4599 aa9.36□□□□□ -0.91
LDB3-208ENST00000623007 PKHD1P08F94 4074 aa9.35□□□□□ -0.91
LDB3-208ENST00000623007 C1orf64Q8NEQ6 169 aa9.33□□□□□ -0.92
LDB3-208ENST00000623007 SERP1Q9Y6X1 66 aa9.33□□□□□ -0.92
LDB3-208ENST00000623007 VPS13BQ7Z7G8 4022 aa9.3□□□□□ -0.92
LDB3-208ENST00000623007 SPANXA2-OT1Q8N9U9 137 aa9.3□□□□□ -0.92
LDB3-208ENST00000623007 Q8N9P0 234 aaPredicted RBP9.29□□□□□ -0.92
LDB3-208ENST00000623007 NOTCH2NLQ7Z3S9 236 aa9.29□□□□□ -0.92
LDB3-208ENST00000623007 KRTAP17-1Q9BYP8 105 aa9.28□□□□□ -0.92
LDB3-208ENST00000623007 LOC101927531A0A1B0GV80 90 aa9.26□□□□□ -0.93
LDB3-208ENST00000623007 Q5VSD8 79 aa9.26□□□□□ -0.93
LDB3-208ENST00000623007 DYNC1H1Q14204 4646 aaKnown RBP9.25□□□□□ -0.93
LDB3-208ENST00000623007 CYP4F30PQ9H0H9 118 aa9.24□□□□□ -0.93
LDB3-208ENST00000623007 HERC2O95714 4834 aa9.24□□□□□ -0.93
LDB3-208ENST00000623007 KRTAP16-1A8MUX0 517 aa9.2□□□□□ -0.94
LDB3-208ENST00000623007 KRTAP13-3Q3SY46 172 aa9.16□□□□□ -0.94
LDB3-208ENST00000623007 KIAA1109Q2LD37 5005 aa9.15□□□□□ -0.94
LDB3-208ENST00000623007 IGLV7-46A0A075B6I9 117 aa9.15□□□□□ -0.94
LDB3-208ENST00000623007 APOBP04114 4563 aaKnown RBP9.15□□□□□ -0.94
LDB3-208ENST00000623007 SMIM26A0A096LP01 95 aa9.14□□□□□ -0.95
LDB3-208ENST00000623007 KRTAP10-8P60410 259 aa9.14□□□□□ -0.95
LDB3-208ENST00000623007 Q8N1X5 172 aa9.14□□□□□ -0.95
LDB3-208ENST00000623007 Q5W150 140 aa9.11□□□□□ -0.95
LDB3-208ENST00000623007 FP248Q71RG6 208 aaPredicted RBP9.1□□□□□ -0.95
LDB3-208ENST00000623007 PCLOQ9Y6V0 5065 aa9.09□□□□□ -0.95
LDB3-208ENST00000623007 PCOTHQ58A44 107 aa9.07□□□□□ -0.96
LDB3-208ENST00000623007 OXTP01178 125 aa9.06□□□□□ -0.96
LDB3-208ENST00000623007 IGKV2-30P06310 120 aa9.06□□□□□ -0.96
LDB3-208ENST00000623007 C20orf166-AS1Q96NR2 134 aa9.04□□□□□ -0.96
LDB3-208ENST00000623007 A8MUU9 505 aa9.02□□□□□ -0.97
LDB3-208ENST00000623007 PRR4Q16378 134 aa9□□□□□ -0.97
LDB3-208ENST00000623007 PKHD1L1Q86WI1 4243 aa8.99□□□□□ -0.97
LDB3-208ENST00000623007 C7orf65Q6ZTY9 151 aa8.97□□□□□ -0.97
LDB3-208ENST00000623007 V9GYY9 64 aa8.97□□□□□ -0.97
LDB3-208ENST00000623007 FAT1Q14517 4588 aa8.96□□□□□ -0.97
LDB3-208ENST00000623007 HSPG2P98160 4391 aa8.96□□□□□ -0.98
LDB3-208ENST00000623007 Q75L30 129 aa8.96□□□□□ -0.98
LDB3-208ENST00000623007 RYR1P21817 5038 aa8.95□□□□□ -0.98
LDB3-208ENST00000623007 ACYP2P14621 99 aa8.94□□□□□ -0.98
LDB3-208ENST00000623007 RETNLBQ9BQ08 111 aa8.94□□□□□ -0.98
LDB3-208ENST00000623007 KRTAP4-5Q9BYR2 181 aa8.94□□□□□ -0.98
LDB3-208ENST00000623007 C9orf92A6NGG3 77 aa8.94□□□□□ -0.98
LDB3-208ENST00000623007 HRES1P13985 223 aa8.93□□□□□ -0.98
LDB3-208ENST00000623007 ABCA13Q86UQ4 5058 aa8.93□□□□□ -0.98
LDB3-208ENST00000623007 FLG2Q5D862 2391 aaPredicted RBP8.92□□□□□ -0.98
LDB3-208ENST00000623007 IGKV2D-30A0A075B6S6 120 aa8.91□□□□□ -0.98
LDB3-208ENST00000623007 COA5Q86WW8 74 aa8.91□□□□□ -0.98
LDB3-208ENST00000623007 DMAC1Q96GE9 116 aa8.91□□□□□ -0.98
LDB3-208ENST00000623007 Q1T7F1 81 aa8.89□□□□□ -0.99
LDB3-208ENST00000623007 MT1HL1P0DM35 61 aa8.88□□□□□ -0.99
LDB3-208ENST00000623007 A8MUN3 132 aa8.86□□□□□ -0.99
LDB3-208ENST00000623007 ATP11AUNQ6ZP68 121 aa8.82□□□□□ -1
LDB3-208ENST00000623007 MPLKIPQ8TAP9 179 aa8.81□□□□□ -1
LDB3-208ENST00000623007 CHKB-CPT1BH3BT56 60 aa8.78□□□□□ -1
LDB3-208ENST00000623007 RPL37P61927 97 aaKnown RBP8.78□□□□□ -1
LDB3-208ENST00000623007 C4orf26Q17RF5 130 aa8.78□□□□□ -1
LDB3-208ENST00000623007 SPINK7P58062 85 aa8.74□□□□□ -1.01
LDB3-208ENST00000623007 TPRXLQ17RH7 258 aa8.74□□□□□ -1.01
LDB3-208ENST00000623007 TNXBP22105 4242 aa8.73□□□□□ -1.01
LDB3-208ENST00000623007 XP32Q5T750 250 aa8.72□□□□□ -1.01
LDB3-208ENST00000623007 LINC01558Q9Y6Z2 57 aa8.69□□□□□ -1.02
LDB3-208ENST00000623007 SPTSSBQ8NFR3 76 aa8.68□□□□□ -1.02
LDB3-208ENST00000623007 DMBT1Q9UGM3 2413 aaPredicted RBP8.68□□□□□ -1.02
LDB3-208ENST00000623007 FAT3Q8TDW7 4589 aa8.65□□□□□ -1.02
LDB3-208ENST00000623007 LRP1Q07954 4544 aaKnown RBP8.64□□□□□ -1.03
LDB3-208ENST00000623007 SVIPQ8NHG7 77 aa8.62□□□□□ -1.03
LDB3-208ENST00000623007 J3QL48 77 aa8.62□□□□□ -1.03
LDB3-208ENST00000623007 HERC1Q15751 4861 aa8.6□□□□□ -1.03
LDB3-208ENST00000623007 COX6B2Q6YFQ2 88 aa8.6□□□□□ -1.03
LDB3-208ENST00000623007 PRR15LQ9BU68 103 aa8.6□□□□□ -1.03
LDB3-208ENST00000623007 MYCBP2O75592 4640 aa8.6□□□□□ -1.03
LDB3-208ENST00000623007 PSPHP1O15172 72 aa8.59□□□□□ -1.03
LDB3-208ENST00000623007 Q5VV11 94 aa8.55□□□□□ -1.04
LDB3-208ENST00000623007 A0A1B0GU69 56 aa8.49□□□□□ -1.05
LDB3-208ENST00000623007 PRO0628Q9UI54 55 aa8.49□□□□□ -1.05
LDB3-208ENST00000623007 BRK1Q8WUW1 75 aa8.48□□□□□ -1.05
LDB3-208ENST00000623007 SEC61GP60059 68 aa8.47□□□□□ -1.05
LDB3-208ENST00000623007 KRTAP3-1Q9BYR8 98 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms