RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 SS18L2Q9UHA2 77 aa11.05□□□□□ -0.64
UPF3A-211ENST00000618700 VPS25Q9BRG1 176 aa11.03□□□□□ -0.64
UPF3A-211ENST00000618700 LPAP08519 4548 aa11.01□□□□□ -0.65
UPF3A-211ENST00000618700 F8W1H4 67 aa11.01□□□□□ -0.65
UPF3A-211ENST00000618700 LRP2P98164 4655 aa11.01□□□□□ -0.65
UPF3A-211ENST00000618700 TPRXLQ17RH7 258 aa10.99□□□□□ -0.65
UPF3A-211ENST00000618700 A0A1B0GV90 55 aa10.98□□□□□ -0.65
UPF3A-211ENST00000618700 C21orf62-AS1Q17RA5 79 aa10.98□□□□□ -0.65
UPF3A-211ENST00000618700 A0A1B0GW54 56 aa10.96□□□□□ -0.65
UPF3A-211ENST00000618700 Q96NJ1 140 aa10.96□□□□□ -0.65
UPF3A-211ENST00000618700 KRTAP13-3Q3SY46 172 aa10.95□□□□□ -0.66
UPF3A-211ENST00000618700 KRTAP4-7Q9BYR0 210 aa10.95□□□□□ -0.66
UPF3A-211ENST00000618700 ETDBQ3ZM63 59 aa10.9□□□□□ -0.66
UPF3A-211ENST00000618700 LINC00472Q9H8W2 130 aa10.89□□□□□ -0.67
UPF3A-211ENST00000618700 IGKV4-1P06312 121 aa10.82□□□□□ -0.68
UPF3A-211ENST00000618700 SIGMAR1Q99720 223 aa10.82□□□□□ -0.68
UPF3A-211ENST00000618700 DEFB116Q30KQ4 102 aa10.81□□□□□ -0.68
UPF3A-211ENST00000618700 KRTAP4-9Q9BYQ8 210 aa10.81□□□□□ -0.68
UPF3A-211ENST00000618700 C9orf92A6NGG3 77 aa10.8□□□□□ -0.68
UPF3A-211ENST00000618700 NREPQ16612 68 aa10.78□□□□□ -0.68
UPF3A-211ENST00000618700 J3KT08 172 aa10.77□□□□□ -0.69
UPF3A-211ENST00000618700 RNF213Q63HN8 5207 aa10.74□□□□□ -0.69
UPF3A-211ENST00000618700 LINC00846Q9NV44 126 aa10.73□□□□□ -0.69
UPF3A-211ENST00000618700 MUC17Q685J3 4493 aa10.72□□□□□ -0.69
UPF3A-211ENST00000618700 Q6ZVQ6 151 aa10.72□□□□□ -0.69
UPF3A-211ENST00000618700 KRTAP9-3Q9BYQ3 159 aa10.72□□□□□ -0.69
UPF3A-211ENST00000618700 A0A1B0GVX0 72 aa10.69□□□□□ -0.7
UPF3A-211ENST00000618700 DSCR10P59022 87 aa10.68□□□□□ -0.7
UPF3A-211ENST00000618700 A8MWP4 228 aa10.67□□□□□ -0.7
UPF3A-211ENST00000618700 KRTAP3-1Q9BYR8 98 aa10.67□□□□□ -0.7
UPF3A-211ENST00000618700 UBL5Q9BZL1 73 aa10.67□□□□□ -0.7
UPF3A-211ENST00000618700 IGHV6-1A0A0B4J1U7 121 aa10.66□□□□□ -0.7
UPF3A-211ENST00000618700 LINC00313P59037 77 aa10.65□□□□□ -0.7
UPF3A-211ENST00000618700 NOTCH2NLQ7Z3S9 236 aa10.65□□□□□ -0.7
UPF3A-211ENST00000618700 IGKV3D-7A0A0C4DH55 119 aa10.64□□□□□ -0.71
UPF3A-211ENST00000618700 FAM240AA0A1B0GVK7 77 aa10.64□□□□□ -0.71
UPF3A-211ENST00000618700 BPY2O14599 106 aa10.64□□□□□ -0.71
UPF3A-211ENST00000618700 NDUFB1O75438 58 aa10.64□□□□□ -0.71
UPF3A-211ENST00000618700 C8orf87E5RJ46 101 aa10.63□□□□□ -0.71
UPF3A-211ENST00000618700 LCE5AQ5TCM9 118 aa10.63□□□□□ -0.71
UPF3A-211ENST00000618700 KRTAP16-1A8MUX0 517 aa10.62□□□□□ -0.71
UPF3A-211ENST00000618700 RPL37P61927 97 aaKnown RBP10.62□□□□□ -0.71
UPF3A-211ENST00000618700 ACYP1P07311 99 aa10.61□□□□□ -0.71
UPF3A-211ENST00000618700 PRR15Q8IV56 129 aa10.6□□□□□ -0.71
UPF3A-211ENST00000618700 SEC61BP60468 96 aaKnown RBP10.59□□□□□ -0.71
UPF3A-211ENST00000618700 Q75L30 129 aa10.59□□□□□ -0.71
UPF3A-211ENST00000618700 C20orf166-AS1Q96NR2 134 aa10.59□□□□□ -0.71
UPF3A-211ENST00000618700 K7EQZ3 153 aa10.58□□□□□ -0.72
UPF3A-211ENST00000618700 A8MUU9 505 aa10.56□□□□□ -0.72
UPF3A-211ENST00000618700 C8orf17Q9NRJ1 99 aa10.56□□□□□ -0.72
UPF3A-211ENST00000618700 MUC2Q02817 5179 aa10.54□□□□□ -0.72
UPF3A-211ENST00000618700 MMP24-AS1A0A0U1RRL7 71 aa10.52□□□□□ -0.73
UPF3A-211ENST00000618700 Q8N9L7 120 aa10.52□□□□□ -0.73
UPF3A-211ENST00000618700 PCOTHQ58A44 107 aa10.51□□□□□ -0.73
UPF3A-211ENST00000618700 CXCL6P80162 114 aa10.5□□□□□ -0.73
UPF3A-211ENST00000618700 KRTAP4-11Q9BYQ6 195 aa10.49□□□□□ -0.73
UPF3A-211ENST00000618700 J3QR89 54 aa10.47□□□□□ -0.73
UPF3A-211ENST00000618700 KRTAP4-2Q9BYR5 136 aa10.47□□□□□ -0.73
UPF3A-211ENST00000618700 KRTAP4-1Q9BYQ7 146 aa10.45□□□□□ -0.74
UPF3A-211ENST00000618700 Q8N9P0 234 aaPredicted RBP10.44□□□□□ -0.74
UPF3A-211ENST00000618700 ATP5EP2Q5VTU8 51 aa10.43□□□□□ -0.74
UPF3A-211ENST00000618700 ATP11AUNQ6ZP68 121 aa10.43□□□□□ -0.74
UPF3A-211ENST00000618700 TMEM254Q8TBM7 123 aa10.43□□□□□ -0.74
UPF3A-211ENST00000618700 hDV103S1A0JD37 113 aa10.42□□□□□ -0.74
UPF3A-211ENST00000618700 MRPL34Q9BQ48 92 aaKnown RBP10.41□□□□□ -0.74
UPF3A-211ENST00000618700 LINC00643Q86TS7 51 aa10.39□□□□□ -0.75
UPF3A-211ENST00000618700 CASC2Q6XLA1 102 aa10.37□□□□□ -0.75
UPF3A-211ENST00000618700 HCG22E2RYF7 251 aa10.36□□□□□ -0.75
UPF3A-211ENST00000618700 WFDC13Q8IUB5 93 aa10.36□□□□□ -0.75
UPF3A-211ENST00000618700 A0A0U1RQV1 116 aa10.33□□□□□ -0.76
UPF3A-211ENST00000618700 K7ERU9 68 aa10.33□□□□□ -0.76
UPF3A-211ENST00000618700 ZCCHC13Q8WW36 166 aaKnown RBP10.31□□□□□ -0.76
UPF3A-211ENST00000618700 NDUFS5O43920 106 aa10.26□□□□□ -0.77
UPF3A-211ENST00000618700 HIST1H4AP62805 103 aaKnown RBP10.25□□□□□ -0.77
UPF3A-211ENST00000618700 KRTAP23-1A1A580 65 aa10.23□□□□□ -0.77
UPF3A-211ENST00000618700 A0A087WVE0 104 aa10.2□□□□□ -0.78
UPF3A-211ENST00000618700 FAT4Q6V0I7 4981 aa10.2□□□□□ -0.78
UPF3A-211ENST00000618700 Q5W150 140 aa10.17□□□□□ -0.78
UPF3A-211ENST00000618700 KRTAP19-2Q3LHN2 52 aa10.16□□□□□ -0.78
UPF3A-211ENST00000618700 TP53AIP1Q9HCN2 124 aa10.13□□□□□ -0.79
UPF3A-211ENST00000618700 SPINK7P58062 85 aa10.11□□□□□ -0.79
UPF3A-211ENST00000618700 MT-ATP8P03928 68 aa10.1□□□□□ -0.79
UPF3A-211ENST00000618700 HRES1P13985 223 aa10.09□□□□□ -0.79
UPF3A-211ENST00000618700 IMUPQ9GZP8 106 aa10.08□□□□□ -0.8
UPF3A-211ENST00000618700 MPLKIPQ8TAP9 179 aa10.06□□□□□ -0.8
UPF3A-211ENST00000618700 C7orf65Q6ZTY9 151 aa10.01□□□□□ -0.81
UPF3A-211ENST00000618700 IGKV2D-30A0A075B6S6 120 aa10□□□□□ -0.81
UPF3A-211ENST00000618700 IGKV2-30P06310 120 aa10□□□□□ -0.81
UPF3A-211ENST00000618700 UQCRQO14949 82 aa9.99□□□□□ -0.81
UPF3A-211ENST00000618700 TRAV22A0A0B4J277 110 aa9.98□□□□□ -0.81
UPF3A-211ENST00000618700 COX6B2Q6YFQ2 88 aa9.98□□□□□ -0.81
UPF3A-211ENST00000618700 OCR1Q9BZK8 76 aa9.97□□□□□ -0.81
UPF3A-211ENST00000618700 FLGP20930 4061 aaPredicted RBP9.97□□□□□ -0.81
UPF3A-211ENST00000618700 RBM12B-AS1Q9P1G2 102 aa9.96□□□□□ -0.82
UPF3A-211ENST00000618700 MT1HP80294 61 aa9.91□□□□□ -0.82
UPF3A-211ENST00000618700 FAM236AA0A1B0GUQ0 79 aa9.89□□□□□ -0.83
UPF3A-211ENST00000618700 FAM236BA0A1B0GV22 79 aa9.89□□□□□ -0.83
UPF3A-211ENST00000618700 H0Y9P7 68 aa9.89□□□□□ -0.83
UPF3A-211ENST00000618700 SCGB1A1P11684 91 aa9.89□□□□□ -0.83
UPF3A-211ENST00000618700 FAM236DA0A1B0GTK5 79 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms