RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 A0A087WTM6 91 aa2.86□□□□□ -1.95
VPS13D-213ENST00000613099 J3QL48 77 aa2.86□□□□□ -1.95
VPS13D-213ENST00000613099 PRUNE2Q8WUY3 3088 aa2.86□□□□□ -1.95
VPS13D-213ENST00000613099 VPS13AQ96RL7 3174 aa2.86□□□□□ -1.95
VPS13D-213ENST00000613099 P0C880 135 aa2.86□□□□□ -1.95
VPS13D-213ENST00000613099 KRTAP24-1Q3LI83 254 aa2.86□□□□□ -1.95
VPS13D-213ENST00000613099 S4R3F8 94 aa2.86□□□□□ -1.95
VPS13D-213ENST00000613099 ADGRG4Q8IZF6 3080 aa2.85□□□□□ -1.95
VPS13D-213ENST00000613099 Q6ZSA8 131 aa2.85□□□□□ -1.95
VPS13D-213ENST00000613099 TENM2Q9NT68 2774 aa2.84□□□□□ -1.95
VPS13D-213ENST00000613099 DMXL2Q8TDJ6 3036 aa2.84□□□□□ -1.95
VPS13D-213ENST00000613099 WDFY4Q6ZS81 3184 aa2.82□□□□□ -1.96
VPS13D-213ENST00000613099 DNAH14Q0VDD8 3507 aa2.82□□□□□ -1.96
VPS13D-213ENST00000613099 KRTAP10-11P60412 298 aa2.82□□□□□ -1.96
VPS13D-213ENST00000613099 CELSR3Q9NYQ7 3312 aa2.82□□□□□ -1.96
VPS13D-213ENST00000613099 H0YAA0 97 aa2.81□□□□□ -1.96
VPS13D-213ENST00000613099 AKAP9Q99996 3911 aa2.81□□□□□ -1.96
VPS13D-213ENST00000613099 COL6A3P12111 3177 aa2.8□□□□□ -1.96
VPS13D-213ENST00000613099 KRTAP1-3Q8IUG1 177 aa2.8□□□□□ -1.96
VPS13D-213ENST00000613099 ATMQ13315 3056 aa2.8□□□□□ -1.96
VPS13D-213ENST00000613099 KRTAP10-3P60369 221 aa2.8□□□□□ -1.96
VPS13D-213ENST00000613099 KRTAP1-1Q07627 177 aa2.79□□□□□ -1.96
VPS13D-213ENST00000613099 CFAP47Q6ZTR5 3102 aa2.79□□□□□ -1.96
VPS13D-213ENST00000613099 LAMA1P25391 3075 aa2.79□□□□□ -1.96
VPS13D-213ENST00000613099 R4GN34 69 aa2.78□□□□□ -1.96
VPS13D-213ENST00000613099 PKD1L1Q8TDX9 2849 aa2.78□□□□□ -1.96
VPS13D-213ENST00000613099 CELSR1Q9NYQ6 3014 aa2.77□□□□□ -1.97
VPS13D-213ENST00000613099 ASPMQ8IZT6 3477 aa2.76□□□□□ -1.97
VPS13D-213ENST00000613099 SPTBN5Q9NRC6 3674 aaKnown RBP2.75□□□□□ -1.97
VPS13D-213ENST00000613099 SRRM2Q9UQ35 2752 aaKnown RBP2.75□□□□□ -1.97
VPS13D-213ENST00000613099 KRTAP23-1A1A580 65 aa2.75□□□□□ -1.97
VPS13D-213ENST00000613099 DMXL1Q9Y485 3027 aa2.74□□□□□ -1.97
VPS13D-213ENST00000613099 BOD1L1Q8NFC6 3051 aa2.73□□□□□ -1.97
VPS13D-213ENST00000613099 C10orf95Q9H7T3 257 aa2.73□□□□□ -1.97
VPS13D-213ENST00000613099 KRTAP15-1Q3LI76 137 aa2.73□□□□□ -1.97
VPS13D-213ENST00000613099 WDFY3Q8IZQ1 3526 aa2.73□□□□□ -1.97
VPS13D-213ENST00000613099 TPRXLQ17RH7 258 aa2.73□□□□□ -1.97
VPS13D-213ENST00000613099 FBN1P35555 2871 aaKnown RBP2.72□□□□□ -1.97
VPS13D-213ENST00000613099 HRNRQ86YZ3 2850 aaPredicted RBP2.72□□□□□ -1.97
VPS13D-213ENST00000613099 SMR3BP02814 79 aaPredicted RBP2.71□□□□□ -1.98
VPS13D-213ENST00000613099 KRTAP13-1Q8IUC0 172 aa2.71□□□□□ -1.98
VPS13D-213ENST00000613099 KRTAP7-1Q8IUC3 87 aa2.71□□□□□ -1.98
VPS13D-213ENST00000613099 MYO15AQ9UKN7 3530 aa2.71□□□□□ -1.98
VPS13D-213ENST00000613099 BSNQ9UPA5 3926 aa2.69□□□□□ -1.98
VPS13D-213ENST00000613099 VCANP13611 3396 aa2.69□□□□□ -1.98
VPS13D-213ENST00000613099 INE1O15225 51 aa2.68□□□□□ -1.98
VPS13D-213ENST00000613099 PRO2289Q9P1D8 64 aa2.68□□□□□ -1.98
VPS13D-213ENST00000613099 TNP1P09430 55 aa2.68□□□□□ -1.98
VPS13D-213ENST00000613099 EYSQ5T1H1 3165 aa2.68□□□□□ -1.98
VPS13D-213ENST00000613099 FBN2P35556 2912 aa2.67□□□□□ -1.98
VPS13D-213ENST00000613099 ZFHX3Q15911 3703 aa2.67□□□□□ -1.98
VPS13D-213ENST00000613099 OTOGQ6ZRI0 2925 aa2.67□□□□□ -1.98
VPS13D-213ENST00000613099 KRTAP13-3Q3SY46 172 aa2.66□□□□□ -1.98
VPS13D-213ENST00000613099 SPENQ96T58 3664 aaKnown RBP2.64□□□□□ -1.99
VPS13D-213ENST00000613099 COL7A1Q02388 2944 aa2.63□□□□□ -1.99
VPS13D-213ENST00000613099 Q6ZRN7 208 aaPredicted RBP2.63□□□□□ -1.99
VPS13D-213ENST00000613099 MEGF8Q7Z7M0 2845 aa2.63□□□□□ -1.99
VPS13D-213ENST00000613099 KRTAP1-5Q9BYS1 174 aa2.62□□□□□ -1.99
VPS13D-213ENST00000613099 DMDP11532 3685 aa2.61□□□□□ -1.99
VPS13D-213ENST00000613099 KRTAP10-8P60410 259 aa2.61□□□□□ -1.99
VPS13D-213ENST00000613099 FRAS1Q86XX4 4008 aa2.6□□□□□ -1.99
VPS13D-213ENST00000613099 FBN3Q75N90 2809 aa2.6□□□□□ -1.99
VPS13D-213ENST00000613099 ZFHX4Q86UP3 3567 aa2.59□□□□□ -1.99
VPS13D-213ENST00000613099 VPS13BQ7Z7G8 4022 aa2.57□□□□□ -2
VPS13D-213ENST00000613099 ANK2Q01484 3957 aa2.57□□□□□ -2
VPS13D-213ENST00000613099 DNAH6Q9C0G6 4158 aa2.56□□□□□ -2
VPS13D-213ENST00000613099 MUC3AQ02505 3323 aa2.56□□□□□ -2
VPS13D-213ENST00000613099 KRTAP13-2Q52LG2 175 aa2.56□□□□□ -2
VPS13D-213ENST00000613099 DNAH3Q8TD57 4116 aa2.56□□□□□ -2
VPS13D-213ENST00000613099 SPEGQ15772 3267 aa2.55□□□□□ -2
VPS13D-213ENST00000613099 DNAH1Q9P2D7 4330 aa2.55□□□□□ -2
VPS13D-213ENST00000613099 M0R2T5 61 aa2.55□□□□□ -2
VPS13D-213ENST00000613099 KRTAP10-1P60331 282 aa2.54□□□□□ -2
VPS13D-213ENST00000613099 DCHS1Q96JQ0 3298 aa2.53□□□□□ -2
VPS13D-213ENST00000613099 CMYA5Q8N3K9 4069 aa2.53□□□□□ -2
VPS13D-213ENST00000613099 Q5VSD8 79 aa2.53□□□□□ -2.01
VPS13D-213ENST00000613099 HECTD4Q9Y4D8 3996 aa2.53□□□□□ -2.01
VPS13D-213ENST00000613099 XP32Q5T750 250 aa2.52□□□□□ -2.01
VPS13D-213ENST00000613099 LAMA5O15230 3695 aa2.52□□□□□ -2.01
VPS13D-213ENST00000613099 KRTAP12-2P59991 146 aa2.52□□□□□ -2.01
VPS13D-213ENST00000613099 TRRAPQ9Y4A5 3859 aa2.52□□□□□ -2.01
VPS13D-213ENST00000613099 SMG1Q96Q15 3661 aaKnown RBP2.52□□□□□ -2.01
VPS13D-213ENST00000613099 KRTAP13-4Q3LI77 160 aa2.52□□□□□ -2.01
VPS13D-213ENST00000613099 VPS13CQ709C8 3753 aa2.51□□□□□ -2.01
VPS13D-213ENST00000613099 KRTAP12-1P59990 96 aa2.5□□□□□ -2.01
VPS13D-213ENST00000613099 KRTAP10-2P60368 255 aa2.5□□□□□ -2.01
VPS13D-213ENST00000613099 RELNP78509 3460 aa2.5□□□□□ -2.01
VPS13D-213ENST00000613099 LOC400499M0QZD8 3231 aa2.48□□□□□ -2.01
VPS13D-213ENST00000613099 NBPF19A0A087WUL8 3843 aa2.47□□□□□ -2.01
VPS13D-213ENST00000613099 ALMS1Q8TCU4 4167 aa2.47□□□□□ -2.01
VPS13D-213ENST00000613099 KRTAP10-6P60371 365 aaPredicted RBP2.45□□□□□ -2.02
VPS13D-213ENST00000613099 KRTAP3-1Q9BYR8 98 aa2.43□□□□□ -2.02
VPS13D-213ENST00000613099 DNAH7Q8WXX0 4024 aa2.41□□□□□ -2.02
VPS13D-213ENST00000613099 KRTAP1-4P0C5Y4 121 aa2.4□□□□□ -2.02
VPS13D-213ENST00000613099 CSMD1Q96PZ7 3565 aa2.4□□□□□ -2.02
VPS13D-213ENST00000613099 PRKDCP78527 4128 aaKnown RBP2.39□□□□□ -2.03
VPS13D-213ENST00000613099 KRTAP3-2Q9BYR7 98 aa2.36□□□□□ -2.03
VPS13D-213ENST00000613099 RYR1P21817 5038 aa2.36□□□□□ -2.03
VPS13D-213ENST00000613099 ZNF469Q96JG9 3925 aaPredicted RBP2.33□□□□□ -2.04
VPS13D-213ENST00000613099 FLGP20930 4061 aaPredicted RBP2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms