RNA–Protein interactions for RNA: ENST00000606752.1

USP6NL-204, Transcript of USP6 N-terminal like, humanhuman

TSL 1 (best)

Gene USP6NL, Length 1,823 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-204ENST00000606752 KRTAP29-1A8MX34 341 aaPredicted RBP12.29□□□□□ -0.44
USP6NL-204ENST00000606752 MMP24-AS1A0A0U1RRL7 71 aa12.28□□□□□ -0.44
USP6NL-204ENST00000606752 KRTAP10-8P60410 259 aa12.28□□□□□ -0.44
USP6NL-204ENST00000606752 CASC2Q6XLA1 102 aa12.28□□□□□ -0.44
USP6NL-204ENST00000606752 C8orf17Q9NRJ1 99 aa12.27□□□□□ -0.44
USP6NL-204ENST00000606752 TRAV7A0A075B6U4 112 aa12.27□□□□□ -0.45
USP6NL-204ENST00000606752 COX7CP15954 63 aa12.27□□□□□ -0.45
USP6NL-204ENST00000606752 OCR1Q9BZK8 76 aa12.24□□□□□ -0.45
USP6NL-204ENST00000606752 hDV103S1A0JD37 113 aa12.23□□□□□ -0.45
USP6NL-204ENST00000606752 UQCRQO14949 82 aa12.23□□□□□ -0.45
USP6NL-204ENST00000606752 CCDC179H3BU77 68 aa12.22□□□□□ -0.45
USP6NL-204ENST00000606752 LRP1Q07954 4544 aaKnown RBP12.21□□□□□ -0.45
USP6NL-204ENST00000606752 NOTCH2NLQ7Z3S9 236 aa12.21□□□□□ -0.46
USP6NL-204ENST00000606752 FLG2Q5D862 2391 aaPredicted RBP12.19□□□□□ -0.46
USP6NL-204ENST00000606752 C8orf87E5RJ46 101 aa12.18□□□□□ -0.46
USP6NL-204ENST00000606752 TNXBP22105 4242 aa12.15□□□□□ -0.46
USP6NL-204ENST00000606752 LINC00313P59037 77 aa12.15□□□□□ -0.46
USP6NL-204ENST00000606752 TMEM254Q8TBM7 123 aa12.14□□□□□ -0.47
USP6NL-204ENST00000606752 FAT3Q8TDW7 4589 aa12.13□□□□□ -0.47
USP6NL-204ENST00000606752 MRPL34Q9BQ48 92 aaKnown RBP12.13□□□□□ -0.47
USP6NL-204ENST00000606752 KRTAP4-5Q9BYR2 181 aa12.11□□□□□ -0.47
USP6NL-204ENST00000606752 MT1HL1P0DM35 61 aa12.09□□□□□ -0.47
USP6NL-204ENST00000606752 OXTP01178 125 aa12.07□□□□□ -0.48
USP6NL-204ENST00000606752 C20orf197Q8N268 126 aa12.07□□□□□ -0.48
USP6NL-204ENST00000606752 BIRC6Q9NR09 4857 aa12.05□□□□□ -0.48
USP6NL-204ENST00000606752 C5orf47Q569G3 176 aa12.04□□□□□ -0.48
USP6NL-204ENST00000606752 RETNLBQ9BQ08 111 aa12.04□□□□□ -0.48
USP6NL-204ENST00000606752 TP53AIP1Q9HCN2 124 aa12.04□□□□□ -0.48
USP6NL-204ENST00000606752 MYCBP2O75592 4640 aa12.04□□□□□ -0.48
USP6NL-204ENST00000606752 NDUFS5O43920 106 aa12.03□□□□□ -0.48
USP6NL-204ENST00000606752 DMBT1Q9UGM3 2413 aaPredicted RBP12.02□□□□□ -0.48
USP6NL-204ENST00000606752 KRTAP16-1A8MUX0 517 aa12□□□□□ -0.49
USP6NL-204ENST00000606752 KLKP1Q107X0 134 aa11.99□□□□□ -0.49
USP6NL-204ENST00000606752 Q8N9P0 234 aaPredicted RBP11.97□□□□□ -0.49
USP6NL-204ENST00000606752 SNURFQ9Y675 71 aa11.97□□□□□ -0.49
USP6NL-204ENST00000606752 A0A0U1RQV1 116 aa11.96□□□□□ -0.49
USP6NL-204ENST00000606752 CYSTM1Q9H1C7 97 aa11.96□□□□□ -0.49
USP6NL-204ENST00000606752 MP68P56378 58 aa11.95□□□□□ -0.5
USP6NL-204ENST00000606752 TRAV22A0A0B4J277 110 aa11.93□□□□□ -0.5
USP6NL-204ENST00000606752 H0Y9P7 68 aa11.93□□□□□ -0.5
USP6NL-204ENST00000606752 FP248Q71RG6 208 aaPredicted RBP11.92□□□□□ -0.5
USP6NL-204ENST00000606752 HERC2O95714 4834 aa11.91□□□□□ -0.5
USP6NL-204ENST00000606752 H3BPC8 53 aa11.88□□□□□ -0.51
USP6NL-204ENST00000606752 C9orf92A6NGG3 77 aa11.88□□□□□ -0.51
USP6NL-204ENST00000606752 ZCCHC13Q8WW36 166 aaKnown RBP11.87□□□□□ -0.51
USP6NL-204ENST00000606752 LINC00208Q96KT6 92 aa11.87□□□□□ -0.51
USP6NL-204ENST00000606752 NDUFC1O43677 76 aa11.85□□□□□ -0.51
USP6NL-204ENST00000606752 Q5W150 140 aa11.84□□□□□ -0.51
USP6NL-204ENST00000606752 H7BZZ5 65 aa11.83□□□□□ -0.52
USP6NL-204ENST00000606752 ABCA13Q86UQ4 5058 aa11.83□□□□□ -0.52
USP6NL-204ENST00000606752 C1orf64Q8NEQ6 169 aa11.82□□□□□ -0.52
USP6NL-204ENST00000606752 IGLV7-46A0A075B6I9 117 aa11.81□□□□□ -0.52
USP6NL-204ENST00000606752 KRTAP13-3Q3SY46 172 aa11.81□□□□□ -0.52
USP6NL-204ENST00000606752 C20orf166-AS1Q96NR2 134 aa11.78□□□□□ -0.52
USP6NL-204ENST00000606752 A8MUU9 505 aa11.76□□□□□ -0.53
USP6NL-204ENST00000606752 TMEM258P61165 79 aa11.76□□□□□ -0.53
USP6NL-204ENST00000606752 J3QL48 77 aa11.74□□□□□ -0.53
USP6NL-204ENST00000606752 PRR4Q16378 134 aa11.72□□□□□ -0.53
USP6NL-204ENST00000606752 LOC101927531A0A1B0GV80 90 aa11.71□□□□□ -0.54
USP6NL-204ENST00000606752 Q75L30 129 aa11.67□□□□□ -0.54
USP6NL-204ENST00000606752 CYP4F30PQ9H0H9 118 aa11.63□□□□□ -0.55
USP6NL-204ENST00000606752 FAM236DA0A1B0GTK5 79 aa11.63□□□□□ -0.55
USP6NL-204ENST00000606752 FAM236CP0DP71 79 aa11.63□□□□□ -0.55
USP6NL-204ENST00000606752 IGKV2-30P06310 120 aa11.62□□□□□ -0.55
USP6NL-204ENST00000606752 PCOTHQ58A44 107 aa11.6□□□□□ -0.55
USP6NL-204ENST00000606752 XP32Q5T750 250 aa11.6□□□□□ -0.55
USP6NL-204ENST00000606752 TPRXLQ17RH7 258 aa11.58□□□□□ -0.56
USP6NL-204ENST00000606752 ATP5EP56381 51 aaPredicted RBP11.58□□□□□ -0.56
USP6NL-204ENST00000606752 RPL37P61927 97 aaKnown RBP11.55□□□□□ -0.56
USP6NL-204ENST00000606752 SPANXA2-OT1Q8N9U9 137 aa11.55□□□□□ -0.56
USP6NL-204ENST00000606752 IGKV2D-30A0A075B6S6 120 aa11.54□□□□□ -0.56
USP6NL-204ENST00000606752 ATP11AUNQ6ZP68 121 aa11.51□□□□□ -0.57
USP6NL-204ENST00000606752 C7orf65Q6ZTY9 151 aa11.49□□□□□ -0.57
USP6NL-204ENST00000606752 HRES1P13985 223 aa11.44□□□□□ -0.58
USP6NL-204ENST00000606752 PCLOQ9Y6V0 5065 aa11.43□□□□□ -0.58
USP6NL-204ENST00000606752 SPINK7P58062 85 aa11.4□□□□□ -0.58
USP6NL-204ENST00000606752 RPS28P62857 69 aaKnown RBP11.4□□□□□ -0.58
USP6NL-204ENST00000606752 SERP1Q9Y6X1 66 aa11.4□□□□□ -0.58
USP6NL-204ENST00000606752 LPAP08519 4548 aa11.33□□□□□ -0.6
USP6NL-204ENST00000606752 LRP2P98164 4655 aa11.3□□□□□ -0.6
USP6NL-204ENST00000606752 DMAC1Q96GE9 116 aa11.27□□□□□ -0.61
USP6NL-204ENST00000606752 C4orf26Q17RF5 130 aa11.25□□□□□ -0.61
USP6NL-204ENST00000606752 ACYP2P14621 99 aa11.23□□□□□ -0.61
USP6NL-204ENST00000606752 COA5Q86WW8 74 aa11.2□□□□□ -0.62
USP6NL-204ENST00000606752 SEC61BP60468 96 aaKnown RBP11.19□□□□□ -0.62
USP6NL-204ENST00000606752 HERC1Q15751 4861 aa11.18□□□□□ -0.62
USP6NL-204ENST00000606752 A8MUN3 132 aa11.15□□□□□ -0.62
USP6NL-204ENST00000606752 SMIM26A0A096LP01 95 aa11.11□□□□□ -0.63
USP6NL-204ENST00000606752 COX6B2Q6YFQ2 88 aa11.11□□□□□ -0.63
USP6NL-204ENST00000606752 KRTAP3-1Q9BYR8 98 aa11.09□□□□□ -0.63
USP6NL-204ENST00000606752 HMCN2Q8NDA2 5059 aa11.06□□□□□ -0.64
USP6NL-204ENST00000606752 CHKB-CPT1BH3BT56 60 aa11.03□□□□□ -0.64
USP6NL-204ENST00000606752 MPLKIPQ8TAP9 179 aa10.98□□□□□ -0.65
USP6NL-204ENST00000606752 MUC17Q685J3 4493 aa10.93□□□□□ -0.66
USP6NL-204ENST00000606752 KRTAP4-1Q9BYQ7 146 aa10.93□□□□□ -0.66
USP6NL-204ENST00000606752 RBM12B-AS1Q9P1G2 102 aa10.93□□□□□ -0.66
USP6NL-204ENST00000606752 Q1T7F1 81 aa10.89□□□□□ -0.67
USP6NL-204ENST00000606752 V9GYY9 64 aa10.86□□□□□ -0.67
USP6NL-204ENST00000606752 H1FX-AS1Q4G0G2 97 aa10.84□□□□□ -0.67
USP6NL-204ENST00000606752 SPTSSBQ8NFR3 76 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms