RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 MT-ATP8P03928 68 aa8.7□□□□□ -1.02
UPF1-206ENST00000598471 K7EQZ3 153 aa8.69□□□□□ -1.02
UPF1-206ENST00000598471 HIST1H4AP62805 103 aaKnown RBP8.69□□□□□ -1.02
UPF1-206ENST00000598471 PRR15Q8IV56 129 aa8.69□□□□□ -1.02
UPF1-206ENST00000598471 A0A1B0GVX0 72 aa8.68□□□□□ -1.02
UPF1-206ENST00000598471 Q8N9L7 120 aa8.68□□□□□ -1.02
UPF1-206ENST00000598471 IMUPQ9GZP8 106 aa8.67□□□□□ -1.02
UPF1-206ENST00000598471 IGHV6-1A0A0B4J1U7 121 aa8.66□□□□□ -1.02
UPF1-206ENST00000598471 C8orf87E5RJ46 101 aa8.65□□□□□ -1.02
UPF1-206ENST00000598471 PRR4Q16378 134 aa8.63□□□□□ -1.03
UPF1-206ENST00000598471 IGLV7-46A0A075B6I9 117 aa8.62□□□□□ -1.03
UPF1-206ENST00000598471 C8orf17Q9NRJ1 99 aa8.61□□□□□ -1.03
UPF1-206ENST00000598471 LINC00313P59037 77 aa8.6□□□□□ -1.03
UPF1-206ENST00000598471 HMCN2Q8NDA2 5059 aa8.6□□□□□ -1.03
UPF1-206ENST00000598471 A0A087WVE0 104 aa8.59□□□□□ -1.03
UPF1-206ENST00000598471 HCG22E2RYF7 251 aa8.59□□□□□ -1.03
UPF1-206ENST00000598471 MMP24-AS1A0A0U1RRL7 71 aa8.58□□□□□ -1.04
UPF1-206ENST00000598471 CASC2Q6XLA1 102 aa8.57□□□□□ -1.04
UPF1-206ENST00000598471 hDV103S1A0JD37 113 aa8.55□□□□□ -1.04
UPF1-206ENST00000598471 WFDC13Q8IUB5 93 aa8.55□□□□□ -1.04
UPF1-206ENST00000598471 NOTCH2NLQ7Z3S9 236 aa8.54□□□□□ -1.04
UPF1-206ENST00000598471 TMEM254Q8TBM7 123 aa8.54□□□□□ -1.04
UPF1-206ENST00000598471 C9orf92A6NGG3 77 aa8.53□□□□□ -1.04
UPF1-206ENST00000598471 MRPL34Q9BQ48 92 aaKnown RBP8.51□□□□□ -1.05
UPF1-206ENST00000598471 FAM236AA0A1B0GUQ0 79 aa8.5□□□□□ -1.05
UPF1-206ENST00000598471 FAM236BA0A1B0GV22 79 aa8.5□□□□□ -1.05
UPF1-206ENST00000598471 TPRXLQ17RH7 258 aa8.5□□□□□ -1.05
UPF1-206ENST00000598471 KRTAP13-3Q3SY46 172 aa8.5□□□□□ -1.05
UPF1-206ENST00000598471 SCGB1A1P11684 91 aa8.49□□□□□ -1.05
UPF1-206ENST00000598471 KRTAP16-1A8MUX0 517 aa8.47□□□□□ -1.05
UPF1-206ENST00000598471 NDUFS5O43920 106 aa8.45□□□□□ -1.06
UPF1-206ENST00000598471 ATOX1O00244 68 aa8.43□□□□□ -1.06
UPF1-206ENST00000598471 Q8N9P0 234 aaPredicted RBP8.43□□□□□ -1.06
UPF1-206ENST00000598471 SMIM20Q8N5G0 67 aa8.41□□□□□ -1.06
UPF1-206ENST00000598471 C20orf166-AS1Q96NR2 134 aa8.41□□□□□ -1.06
UPF1-206ENST00000598471 TP53AIP1Q9HCN2 124 aa8.41□□□□□ -1.06
UPF1-206ENST00000598471 A8MUU9 505 aa8.4□□□□□ -1.06
UPF1-206ENST00000598471 XP32Q5T750 250 aa8.4□□□□□ -1.06
UPF1-206ENST00000598471 Q75L30 129 aa8.39□□□□□ -1.07
UPF1-206ENST00000598471 LPAP08519 4548 aa8.37□□□□□ -1.07
UPF1-206ENST00000598471 LRP2P98164 4655 aa8.36□□□□□ -1.07
UPF1-206ENST00000598471 UQCRQO14949 82 aa8.35□□□□□ -1.07
UPF1-206ENST00000598471 RPL37P61927 97 aaKnown RBP8.35□□□□□ -1.07
UPF1-206ENST00000598471 OCR1Q9BZK8 76 aa8.35□□□□□ -1.07
UPF1-206ENST00000598471 UBR4Q5T4S7 5183 aa8.34□□□□□ -1.07
UPF1-206ENST00000598471 TRAV7A0A075B6U4 112 aa8.33□□□□□ -1.08
UPF1-206ENST00000598471 ATP11AUNQ6ZP68 121 aa8.31□□□□□ -1.08
UPF1-206ENST00000598471 ZCCHC13Q8WW36 166 aaKnown RBP8.3□□□□□ -1.08
UPF1-206ENST00000598471 TRAV22A0A0B4J277 110 aa8.29□□□□□ -1.08
UPF1-206ENST00000598471 SERP2Q8N6R1 65 aa8.29□□□□□ -1.08
UPF1-206ENST00000598471 ANAPC13Q9BS18 74 aa8.29□□□□□ -1.08
UPF1-206ENST00000598471 C5orf47Q569G3 176 aa8.27□□□□□ -1.09
UPF1-206ENST00000598471 H0Y9P7 68 aa8.26□□□□□ -1.09
UPF1-206ENST00000598471 MP68P56378 58 aa8.26□□□□□ -1.09
UPF1-206ENST00000598471 SEC61BP60468 96 aaKnown RBP8.25□□□□□ -1.09
UPF1-206ENST00000598471 Q5W150 140 aa8.23□□□□□ -1.09
UPF1-206ENST00000598471 H3BPC8 53 aa8.21□□□□□ -1.1
UPF1-206ENST00000598471 COX7CP15954 63 aa8.21□□□□□ -1.1
UPF1-206ENST00000598471 PCOTHQ58A44 107 aa8.2□□□□□ -1.1
UPF1-206ENST00000598471 LOC101927531A0A1B0GV80 90 aa8.18□□□□□ -1.1
UPF1-206ENST00000598471 LINC00208Q96KT6 92 aa8.18□□□□□ -1.1
UPF1-206ENST00000598471 C1orf64Q8NEQ6 169 aa8.16□□□□□ -1.1
UPF1-206ENST00000598471 RNF213Q63HN8 5207 aa8.15□□□□□ -1.1
UPF1-206ENST00000598471 C20orf197Q8N268 126 aa8.15□□□□□ -1.1
UPF1-206ENST00000598471 IGKV2D-30A0A075B6S6 120 aa8.14□□□□□ -1.11
UPF1-206ENST00000598471 IGKV2-30P06310 120 aa8.14□□□□□ -1.11
UPF1-206ENST00000598471 C7orf65Q6ZTY9 151 aa8.14□□□□□ -1.11
UPF1-206ENST00000598471 A0A0U1RQV1 116 aa8.12□□□□□ -1.11
UPF1-206ENST00000598471 SPINK7P58062 85 aa8.09□□□□□ -1.11
UPF1-206ENST00000598471 CYP4F30PQ9H0H9 118 aa8.09□□□□□ -1.11
UPF1-206ENST00000598471 SNURFQ9Y675 71 aa8.09□□□□□ -1.11
UPF1-206ENST00000598471 KLKP1Q107X0 134 aa8.08□□□□□ -1.12
UPF1-206ENST00000598471 MUC17Q685J3 4493 aa8.08□□□□□ -1.12
UPF1-206ENST00000598471 CCDC179H3BU77 68 aa8.06□□□□□ -1.12
UPF1-206ENST00000598471 PCP4P48539 62 aa8.05□□□□□ -1.12
UPF1-206ENST00000598471 NDUFC1O43677 76 aa8.02□□□□□ -1.13
UPF1-206ENST00000598471 MUC2Q02817 5179 aa7.95□□□□□ -1.14
UPF1-206ENST00000598471 HRES1P13985 223 aa7.95□□□□□ -1.14
UPF1-206ENST00000598471 KRTAP4-1Q9BYQ7 146 aa7.95□□□□□ -1.14
UPF1-206ENST00000598471 RBM12B-AS1Q9P1G2 102 aa7.93□□□□□ -1.14
UPF1-206ENST00000598471 H7BZZ5 65 aa7.92□□□□□ -1.14
UPF1-206ENST00000598471 CYSTM1Q9H1C7 97 aa7.92□□□□□ -1.14
UPF1-206ENST00000598471 C4orf26Q17RF5 130 aa7.91□□□□□ -1.14
UPF1-206ENST00000598471 SPANXA2-OT1Q8N9U9 137 aa7.9□□□□□ -1.14
UPF1-206ENST00000598471 COX6B2Q6YFQ2 88 aa7.88□□□□□ -1.15
UPF1-206ENST00000598471 MPLKIPQ8TAP9 179 aa7.87□□□□□ -1.15
UPF1-206ENST00000598471 FAM236DA0A1B0GTK5 79 aa7.86□□□□□ -1.15
UPF1-206ENST00000598471 FAM236CP0DP71 79 aa7.86□□□□□ -1.15
UPF1-206ENST00000598471 A8MUN3 132 aa7.84□□□□□ -1.15
UPF1-206ENST00000598471 TMEM258P61165 79 aa7.84□□□□□ -1.15
UPF1-206ENST00000598471 ATP5EP56381 51 aaPredicted RBP7.82□□□□□ -1.16
UPF1-206ENST00000598471 FAT4Q6V0I7 4981 aa7.81□□□□□ -1.16
UPF1-206ENST00000598471 DMAC1Q96GE9 116 aa7.8□□□□□ -1.16
UPF1-206ENST00000598471 ACYP2P14621 99 aa7.76□□□□□ -1.17
UPF1-206ENST00000598471 H1FX-AS1Q4G0G2 97 aa7.76□□□□□ -1.17
UPF1-206ENST00000598471 KRTAP3-1Q9BYR8 98 aa7.75□□□□□ -1.17
UPF1-206ENST00000598471 KRTAP19-2Q3LHN2 52 aa7.69□□□□□ -1.18
UPF1-206ENST00000598471 CHKB-CPT1BH3BT56 60 aa7.66□□□□□ -1.18
UPF1-206ENST00000598471 S4R3F8 94 aa7.66□□□□□ -1.18
UPF1-206ENST00000598471 LCE2AQ5TA79 106 aaPredicted RBP7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms