RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 CCDC179H3BU77 68 aa7.4□□□□□ -1.22
SCAF1-202ENST00000595242 C9orf153Q5TBE3 101 aa7.39□□□□□ -1.23
SCAF1-202ENST00000595242 SMIM20Q8N5G0 67 aa7.39□□□□□ -1.23
SCAF1-202ENST00000595242 RETNLBQ9BQ08 111 aa7.39□□□□□ -1.23
SCAF1-202ENST00000595242 IGLV9-49A0A0B4J1Y8 123 aa7.38□□□□□ -1.23
SCAF1-202ENST00000595242 TPRXLQ17RH7 258 aa7.38□□□□□ -1.23
SCAF1-202ENST00000595242 Q8N9L7 120 aa7.37□□□□□ -1.23
SCAF1-202ENST00000595242 LINC00472Q9H8W2 130 aa7.37□□□□□ -1.23
SCAF1-202ENST00000595242 MOBPQ13875 183 aa7.36□□□□□ -1.23
SCAF1-202ENST00000595242 TRAV7A0A075B6U4 112 aa7.35□□□□□ -1.23
SCAF1-202ENST00000595242 K7EQZ3 153 aa7.34□□□□□ -1.23
SCAF1-202ENST00000595242 FAM229BQ4G0N7 80 aa7.34□□□□□ -1.23
SCAF1-202ENST00000595242 SS18L2Q9UHA2 77 aa7.34□□□□□ -1.23
SCAF1-202ENST00000595242 IGLV7-46A0A075B6I9 117 aa7.33□□□□□ -1.24
SCAF1-202ENST00000595242 A0A087X002 238 aa7.33□□□□□ -1.24
SCAF1-202ENST00000595242 J3KT08 172 aa7.33□□□□□ -1.24
SCAF1-202ENST00000595242 CD164Q04900 197 aa7.33□□□□□ -1.24
SCAF1-202ENST00000595242 SSBP3-AS1Q7Z2R9 100 aa7.33□□□□□ -1.24
SCAF1-202ENST00000595242 TYMSOSQ8TAI1 123 aa7.33□□□□□ -1.24
SCAF1-202ENST00000595242 ANAPC11Q9NYG5 84 aa7.32□□□□□ -1.24
SCAF1-202ENST00000595242 KRTAP9-7A8MTY7 169 aa7.31□□□□□ -1.24
SCAF1-202ENST00000595242 Q96NJ1 140 aa7.31□□□□□ -1.24
SCAF1-202ENST00000595242 A8MWP4 228 aa7.29□□□□□ -1.24
SCAF1-202ENST00000595242 OCR1Q9BZK8 76 aa7.29□□□□□ -1.24
SCAF1-202ENST00000595242 HCG22E2RYF7 251 aa7.28□□□□□ -1.24
SCAF1-202ENST00000595242 PRR15Q8IV56 129 aa7.28□□□□□ -1.24
SCAF1-202ENST00000595242 DEFB116Q30KQ4 102 aa7.27□□□□□ -1.25
SCAF1-202ENST00000595242 KRTAP4-1Q9BYQ7 146 aa7.27□□□□□ -1.25
SCAF1-202ENST00000595242 ASB16-AS1Q495Z4 193 aa7.26□□□□□ -1.25
SCAF1-202ENST00000595242 KRTAP13-2Q52LG2 175 aa7.26□□□□□ -1.25
SCAF1-202ENST00000595242 Q5XG85 94 aa7.24□□□□□ -1.25
SCAF1-202ENST00000595242 LINC00304Q8N9R0 145 aa7.24□□□□□ -1.25
SCAF1-202ENST00000595242 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.23□□□□□ -1.25
SCAF1-202ENST00000595242 KLKP1Q107X0 134 aa7.23□□□□□ -1.25
SCAF1-202ENST00000595242 HRCT1Q6UXD1 115 aa7.23□□□□□ -1.25
SCAF1-202ENST00000595242 MMP24-AS1A0A0U1RRL7 71 aa7.21□□□□□ -1.26
SCAF1-202ENST00000595242 NDUFB1O75438 58 aa7.21□□□□□ -1.26
SCAF1-202ENST00000595242 LCE2CQ5TA81 110 aa7.2□□□□□ -1.26
SCAF1-202ENST00000595242 C20orf197Q8N268 126 aa7.2□□□□□ -1.26
SCAF1-202ENST00000595242 CYSTM1Q9H1C7 97 aa7.2□□□□□ -1.26
SCAF1-202ENST00000595242 A0A1B0GVX0 72 aa7.18□□□□□ -1.26
SCAF1-202ENST00000595242 CASC2Q6XLA1 102 aa7.18□□□□□ -1.26
SCAF1-202ENST00000595242 SEC61BP60468 96 aaKnown RBP7.17□□□□□ -1.26
SCAF1-202ENST00000595242 TMEM258P61165 79 aa7.17□□□□□ -1.26
SCAF1-202ENST00000595242 WFDC13Q8IUB5 93 aa7.17□□□□□ -1.26
SCAF1-202ENST00000595242 TMEM254Q8TBM7 123 aa7.16□□□□□ -1.26
SCAF1-202ENST00000595242 C8orf17Q9NRJ1 99 aa7.16□□□□□ -1.26
SCAF1-202ENST00000595242 NDUFC1O43677 76 aa7.15□□□□□ -1.26
SCAF1-202ENST00000595242 MT1HP80294 61 aa7.15□□□□□ -1.26
SCAF1-202ENST00000595242 KRTAP13-3Q3SY46 172 aa7.15□□□□□ -1.26
SCAF1-202ENST00000595242 LIMD2Q9BT23 127 aa7.14□□□□□ -1.27
SCAF1-202ENST00000595242 hDV103S1A0JD37 113 aa7.13□□□□□ -1.27
SCAF1-202ENST00000595242 H7BZZ5 65 aa7.13□□□□□ -1.27
SCAF1-202ENST00000595242 LORP23490 312 aaPredicted RBP7.13□□□□□ -1.27
SCAF1-202ENST00000595242 RPS29P62273 56 aaKnown RBP7.13□□□□□ -1.27
SCAF1-202ENST00000595242 C5orf47Q569G3 176 aa7.13□□□□□ -1.27
SCAF1-202ENST00000595242 FP248Q71RG6 208 aaPredicted RBP7.12□□□□□ -1.27
SCAF1-202ENST00000595242 ZCCHC13Q8WW36 166 aaKnown RBP7.11□□□□□ -1.27
SCAF1-202ENST00000595242 SNURFQ9Y675 71 aa7.11□□□□□ -1.27
SCAF1-202ENST00000595242 C8orf87E5RJ46 101 aa7.1□□□□□ -1.27
SCAF1-202ENST00000595242 SPINK1P00995 79 aa7.1□□□□□ -1.27
SCAF1-202ENST00000595242 KRTAP10-6P60371 365 aaPredicted RBP7.1□□□□□ -1.27
SCAF1-202ENST00000595242 KRTAP19-2Q3LHN2 52 aa7.1□□□□□ -1.27
SCAF1-202ENST00000595242 C1orf195Q5TG92 126 aa7.1□□□□□ -1.27
SCAF1-202ENST00000595242 IGHV6-1A0A0B4J1U7 121 aa7.09□□□□□ -1.27
SCAF1-202ENST00000595242 H3BPC8 53 aa7.08□□□□□ -1.28
SCAF1-202ENST00000595242 SPAG11AQ6PDA7 123 aa7.08□□□□□ -1.28
SCAF1-202ENST00000595242 MRPL34Q9BQ48 92 aaKnown RBP7.08□□□□□ -1.28
SCAF1-202ENST00000595242 TP53AIP1Q9HCN2 124 aa7.08□□□□□ -1.28
SCAF1-202ENST00000595242 C4orf48Q5BLP8 95 aa7.06□□□□□ -1.28
SCAF1-202ENST00000595242 FAM236DA0A1B0GTK5 79 aa7.04□□□□□ -1.28
SCAF1-202ENST00000595242 FAM236CP0DP71 79 aa7.04□□□□□ -1.28
SCAF1-202ENST00000595242 MP68P56378 58 aa7.04□□□□□ -1.28
SCAF1-202ENST00000595242 ATP5EP56381 51 aaPredicted RBP7.04□□□□□ -1.28
SCAF1-202ENST00000595242 NOTCH2NLQ7Z3S9 236 aa7.04□□□□□ -1.28
SCAF1-202ENST00000595242 TRAV22A0A0B4J277 110 aa7.02□□□□□ -1.29
SCAF1-202ENST00000595242 H0Y9P7 68 aa7.02□□□□□ -1.29
SCAF1-202ENST00000595242 RPS28P62857 69 aaKnown RBP7.02□□□□□ -1.29
SCAF1-202ENST00000595242 SSPOA2VEC9 5147 aa7.01□□□□□ -1.29
SCAF1-202ENST00000595242 M0R2T5 61 aa6.99□□□□□ -1.29
SCAF1-202ENST00000595242 LINC00313P59037 77 aa6.99□□□□□ -1.29
SCAF1-202ENST00000595242 USH2AO75445 5202 aa6.98□□□□□ -1.29
SCAF1-202ENST00000595242 KRTAP16-1A8MUX0 517 aa6.98□□□□□ -1.29
SCAF1-202ENST00000595242 XP32Q5T750 250 aa6.98□□□□□ -1.29
SCAF1-202ENST00000595242 LINC00208Q96KT6 92 aa6.98□□□□□ -1.29
SCAF1-202ENST00000595242 Q8N9P0 234 aaPredicted RBP6.97□□□□□ -1.29
SCAF1-202ENST00000595242 FLGP20930 4061 aaPredicted RBP6.96□□□□□ -1.29
SCAF1-202ENST00000595242 NDUFS5O43920 106 aa6.94□□□□□ -1.3
SCAF1-202ENST00000595242 C1orf64Q8NEQ6 169 aa6.94□□□□□ -1.3
SCAF1-202ENST00000595242 SERP1Q9Y6X1 66 aa6.94□□□□□ -1.3
SCAF1-202ENST00000595242 SPANXA2-OT1Q8N9U9 137 aa6.92□□□□□ -1.3
SCAF1-202ENST00000595242 SYNE2Q8WXH0 6885 aaKnown RBP6.91□□□□□ -1.3
SCAF1-202ENST00000595242 CYP4F30PQ9H0H9 118 aa6.91□□□□□ -1.3
SCAF1-202ENST00000595242 FCGBPQ9Y6R7 5405 aaPredicted RBP6.91□□□□□ -1.3
SCAF1-202ENST00000595242 LOC101927531A0A1B0GV80 90 aa6.89□□□□□ -1.31
SCAF1-202ENST00000595242 PCOTHQ58A44 107 aa6.89□□□□□ -1.31
SCAF1-202ENST00000595242 Q5W150 140 aa6.89□□□□□ -1.31
SCAF1-202ENST00000595242 MACF1Q9UPN3 7388 aaKnown RBP6.86□□□□□ -1.31
SCAF1-202ENST00000595242 COX6B2Q6YFQ2 88 aa6.82□□□□□ -1.32
SCAF1-202ENST00000595242 IGKV2-30P06310 120 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms