RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 VPS13BQ7Z7G8 4022 aa11.47□□□□□ -0.57
CLIP3-206ENST00000593074 KRTAP1-4P0C5Y4 121 aa11.47□□□□□ -0.57
CLIP3-206ENST00000593074 TP53AIP1Q9HCN2 124 aa11.47□□□□□ -0.57
CLIP3-206ENST00000593074 PKHD1P08F94 4074 aa11.45□□□□□ -0.58
CLIP3-206ENST00000593074 SPINK6Q6UWN8 80 aa11.44□□□□□ -0.58
CLIP3-206ENST00000593074 Q5XG85 94 aa11.44□□□□□ -0.58
CLIP3-206ENST00000593074 NOTCH2NLQ7Z3S9 236 aa11.44□□□□□ -0.58
CLIP3-206ENST00000593074 MRPL34Q9BQ48 92 aaKnown RBP11.43□□□□□ -0.58
CLIP3-206ENST00000593074 C1orf64Q8NEQ6 169 aa11.41□□□□□ -0.58
CLIP3-206ENST00000593074 SMIM26A0A096LP01 95 aa11.39□□□□□ -0.59
CLIP3-206ENST00000593074 CYP4F30PQ9H0H9 118 aa11.39□□□□□ -0.59
CLIP3-206ENST00000593074 PLA2G1BP04054 148 aaKnown RBP11.38□□□□□ -0.59
CLIP3-206ENST00000593074 SMR3BP02814 79 aaPredicted RBP11.36□□□□□ -0.59
CLIP3-206ENST00000593074 NDUFS5O43920 106 aa11.36□□□□□ -0.59
CLIP3-206ENST00000593074 FP248Q71RG6 208 aaPredicted RBP11.35□□□□□ -0.59
CLIP3-206ENST00000593074 SPANXA2-OT1Q8N9U9 137 aa11.35□□□□□ -0.59
CLIP3-206ENST00000593074 C8orf87E5RJ46 101 aa11.34□□□□□ -0.59
CLIP3-206ENST00000593074 C1orf195Q5TG92 126 aa11.33□□□□□ -0.6
CLIP3-206ENST00000593074 C4orf26Q17RF5 130 aa11.31□□□□□ -0.6
CLIP3-206ENST00000593074 DYNC1H1Q14204 4646 aaKnown RBP11.31□□□□□ -0.6
CLIP3-206ENST00000593074 RYR2Q92736 4967 aa11.31□□□□□ -0.6
CLIP3-206ENST00000593074 PRR4Q16378 134 aa11.3□□□□□ -0.6
CLIP3-206ENST00000593074 LIMD2Q9BT23 127 aa11.3□□□□□ -0.6
CLIP3-206ENST00000593074 TYMSOSQ8TAI1 123 aa11.29□□□□□ -0.6
CLIP3-206ENST00000593074 C4orf48Q5BLP8 95 aa11.27□□□□□ -0.61
CLIP3-206ENST00000593074 LINC00313P59037 77 aa11.24□□□□□ -0.61
CLIP3-206ENST00000593074 KRTAP13-3Q3SY46 172 aa11.23□□□□□ -0.61
CLIP3-206ENST00000593074 SPINK1P00995 79 aa11.22□□□□□ -0.61
CLIP3-206ENST00000593074 PRR26Q8N8Z3 221 aa11.21□□□□□ -0.61
CLIP3-206ENST00000593074 KMT2CQ8NEZ4 4911 aaKnown RBP11.21□□□□□ -0.61
CLIP3-206ENST00000593074 IGLV7-46A0A075B6I9 117 aa11.21□□□□□ -0.62
CLIP3-206ENST00000593074 KRTAP10-4P60372 401 aaPredicted RBP11.21□□□□□ -0.62
CLIP3-206ENST00000593074 APOBP04114 4563 aaKnown RBP11.2□□□□□ -0.62
CLIP3-206ENST00000593074 Q5W150 140 aa11.2□□□□□ -0.62
CLIP3-206ENST00000593074 PCOTHQ58A44 107 aa11.19□□□□□ -0.62
CLIP3-206ENST00000593074 Q8N9P0 234 aaPredicted RBP11.19□□□□□ -0.62
CLIP3-206ENST00000593074 LOC101927531A0A1B0GV80 90 aa11.16□□□□□ -0.62
CLIP3-206ENST00000593074 KRTAP16-1A8MUX0 517 aa11.15□□□□□ -0.62
CLIP3-206ENST00000593074 RPS29P62273 56 aaKnown RBP11.15□□□□□ -0.62
CLIP3-206ENST00000593074 LINC00304Q8N9R0 145 aa11.14□□□□□ -0.63
CLIP3-206ENST00000593074 MPLKIPQ8TAP9 179 aa11.14□□□□□ -0.63
CLIP3-206ENST00000593074 SPAG11AQ6PDA7 123 aa11.13□□□□□ -0.63
CLIP3-206ENST00000593074 FAM229AH3BQW9 127 aa11.1□□□□□ -0.63
CLIP3-206ENST00000593074 FAT1Q14517 4588 aa11.09□□□□□ -0.63
CLIP3-206ENST00000593074 Q1T7F1 81 aa11.08□□□□□ -0.64
CLIP3-206ENST00000593074 PKHD1L1Q86WI1 4243 aa11.04□□□□□ -0.64
CLIP3-206ENST00000593074 COA5Q86WW8 74 aa11.04□□□□□ -0.64
CLIP3-206ENST00000593074 IGKV2-30P06310 120 aa10.97□□□□□ -0.65
CLIP3-206ENST00000593074 RETNLBQ9BQ08 111 aa10.97□□□□□ -0.65
CLIP3-206ENST00000593074 V9GYY9 64 aa10.96□□□□□ -0.66
CLIP3-206ENST00000593074 HRES1P13985 223 aa10.94□□□□□ -0.66
CLIP3-206ENST00000593074 Q5VSD8 79 aa10.94□□□□□ -0.66
CLIP3-206ENST00000593074 RYR3Q15413 4870 aa10.92□□□□□ -0.66
CLIP3-206ENST00000593074 PSPHP1O15172 72 aa10.86□□□□□ -0.67
CLIP3-206ENST00000593074 DMAC1Q96GE9 116 aa10.86□□□□□ -0.67
CLIP3-206ENST00000593074 HSPG2P98160 4391 aa10.82□□□□□ -0.68
CLIP3-206ENST00000593074 A8MUN3 132 aa10.82□□□□□ -0.68
CLIP3-206ENST00000593074 ACYP2P14621 99 aa10.82□□□□□ -0.68
CLIP3-206ENST00000593074 IGKV2D-30A0A075B6S6 120 aa10.81□□□□□ -0.68
CLIP3-206ENST00000593074 KRTAP10-8P60410 259 aa10.81□□□□□ -0.68
CLIP3-206ENST00000593074 PRO0628Q9UI54 55 aa10.81□□□□□ -0.68
CLIP3-206ENST00000593074 Q8N1X5 172 aa10.8□□□□□ -0.68
CLIP3-206ENST00000593074 BRK1Q8WUW1 75 aa10.79□□□□□ -0.68
CLIP3-206ENST00000593074 Q5VV11 94 aa10.78□□□□□ -0.68
CLIP3-206ENST00000593074 C20orf166-AS1Q96NR2 134 aa10.78□□□□□ -0.68
CLIP3-206ENST00000593074 C9orf92A6NGG3 77 aa10.76□□□□□ -0.69
CLIP3-206ENST00000593074 A8MUU9 505 aa10.76□□□□□ -0.69
CLIP3-206ENST00000593074 KRTAP17-1Q9BYP8 105 aa10.76□□□□□ -0.69
CLIP3-206ENST00000593074 PRR15LQ9BU68 103 aa10.74□□□□□ -0.69
CLIP3-206ENST00000593074 RYR1P21817 5038 aa10.74□□□□□ -0.69
CLIP3-206ENST00000593074 C7orf65Q6ZTY9 151 aa10.73□□□□□ -0.69
CLIP3-206ENST00000593074 LINC01558Q9Y6Z2 57 aa10.73□□□□□ -0.69
CLIP3-206ENST00000593074 FLG2Q5D862 2391 aaPredicted RBP10.73□□□□□ -0.69
CLIP3-206ENST00000593074 TNXBP22105 4242 aa10.71□□□□□ -0.69
CLIP3-206ENST00000593074 Q75L30 129 aa10.68□□□□□ -0.7
CLIP3-206ENST00000593074 LRP1Q07954 4544 aaKnown RBP10.67□□□□□ -0.7
CLIP3-206ENST00000593074 CHKB-CPT1BH3BT56 60 aa10.66□□□□□ -0.7
CLIP3-206ENST00000593074 FAT3Q8TDW7 4589 aa10.62□□□□□ -0.71
CLIP3-206ENST00000593074 KIAA1109Q2LD37 5005 aa10.61□□□□□ -0.71
CLIP3-206ENST00000593074 MT1HL1P0DM35 61 aa10.56□□□□□ -0.72
CLIP3-206ENST00000593074 EPPK1P58107 5090 aaKnown RBP10.53□□□□□ -0.72
CLIP3-206ENST00000593074 DMBT1Q9UGM3 2413 aaPredicted RBP10.51□□□□□ -0.73
CLIP3-206ENST00000593074 A6NED7 52 aa10.5□□□□□ -0.73
CLIP3-206ENST00000593074 SPINK7P58062 85 aa10.48□□□□□ -0.73
CLIP3-206ENST00000593074 A8MU10 97 aa10.47□□□□□ -0.73
CLIP3-206ENST00000593074 LCA10Q71F78 164 aa10.44□□□□□ -0.74
CLIP3-206ENST00000593074 MYCBP2O75592 4640 aa10.41□□□□□ -0.74
CLIP3-206ENST00000593074 CDC42SE1Q9NRR8 79 aa10.41□□□□□ -0.74
CLIP3-206ENST00000593074 A0A1B0GU69 56 aa10.4□□□□□ -0.74
CLIP3-206ENST00000593074 KRTAP3-1Q9BYR8 98 aa10.4□□□□□ -0.75
CLIP3-206ENST00000593074 ATP11AUNQ6ZP68 121 aa10.39□□□□□ -0.75
CLIP3-206ENST00000593074 RPL37P61927 97 aaKnown RBP10.38□□□□□ -0.75
CLIP3-206ENST00000593074 KRTAP4-5Q9BYR2 181 aa10.38□□□□□ -0.75
CLIP3-206ENST00000593074 XP32Q5T750 250 aa10.37□□□□□ -0.75
CLIP3-206ENST00000593074 SPTSSBQ8NFR3 76 aa10.3□□□□□ -0.76
CLIP3-206ENST00000593074 COX6B2Q6YFQ2 88 aa10.3□□□□□ -0.76
CLIP3-206ENST00000593074 TPRXLQ17RH7 258 aa10.21□□□□□ -0.78
CLIP3-206ENST00000593074 PMAIP1Q13794 54 aa10.19□□□□□ -0.78
CLIP3-206ENST00000593074 UQCR11O14957 56 aa10.18□□□□□ -0.78
CLIP3-206ENST00000593074 SEC61GP60059 68 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms