RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 LINC00472Q9H8W2 130 aa5.5□□□□□ -1.53
LIG3-212ENST00000590181 TRBV20-1A0A075B6N2 111 aa5.49□□□□□ -1.53
LIG3-212ENST00000590181 C8orf87E5RJ46 101 aa5.48□□□□□ -1.53
LIG3-212ENST00000590181 TSTD3H0UI37 97 aa5.47□□□□□ -1.53
LIG3-212ENST00000590181 NDUFB1O75438 58 aa5.45□□□□□ -1.54
LIG3-212ENST00000590181 SSPOA2VEC9 5147 aa5.44□□□□□ -1.54
LIG3-212ENST00000590181 LOC110117498A0A087WWA1 95 aa5.44□□□□□ -1.54
LIG3-212ENST00000590181 Q6ZQT0 140 aa5.44□□□□□ -1.54
LIG3-212ENST00000590181 DSCR10P59022 87 aa5.43□□□□□ -1.54
LIG3-212ENST00000590181 VPS25Q9BRG1 176 aa5.43□□□□□ -1.54
LIG3-212ENST00000590181 USH2AO75445 5202 aa5.43□□□□□ -1.54
LIG3-212ENST00000590181 IGHV6-1A0A0B4J1U7 121 aa5.42□□□□□ -1.54
LIG3-212ENST00000590181 A0A1B0GVX0 72 aa5.42□□□□□ -1.54
LIG3-212ENST00000590181 A0A1B0GV72 72 aa5.41□□□□□ -1.54
LIG3-212ENST00000590181 KRTAP16-1A8MUX0 517 aa5.41□□□□□ -1.54
LIG3-212ENST00000590181 SVIPQ8NHG7 77 aa5.41□□□□□ -1.54
LIG3-212ENST00000590181 RBM12B-AS1Q9P1G2 102 aa5.39□□□□□ -1.55
LIG3-212ENST00000590181 DEFB116Q30KQ4 102 aa5.38□□□□□ -1.55
LIG3-212ENST00000590181 MTURNQ8N3F0 131 aa5.38□□□□□ -1.55
LIG3-212ENST00000590181 C9orf118A6NHY6 69 aa5.36□□□□□ -1.55
LIG3-212ENST00000590181 A8MWP4 228 aa5.36□□□□□ -1.55
LIG3-212ENST00000590181 H3BT86 120 aa5.36□□□□□ -1.55
LIG3-212ENST00000590181 Q8N9P0 234 aaPredicted RBP5.36□□□□□ -1.55
LIG3-212ENST00000590181 NREPQ16612 68 aa5.35□□□□□ -1.55
LIG3-212ENST00000590181 NOTCH2NLQ7Z3S9 236 aa5.35□□□□□ -1.55
LIG3-212ENST00000590181 FCGBPQ9Y6R7 5405 aaPredicted RBP5.35□□□□□ -1.55
LIG3-212ENST00000590181 LOC105371267A0A1B0GV96 52 aa5.34□□□□□ -1.55
LIG3-212ENST00000590181 ZCCHC13Q8WW36 166 aaKnown RBP5.33□□□□□ -1.56
LIG3-212ENST00000590181 C14orf132Q9NPU4 83 aa5.33□□□□□ -1.56
LIG3-212ENST00000590181 A0A1W2PPM0 123 aa5.32□□□□□ -1.56
LIG3-212ENST00000590181 MPLKIPQ8TAP9 179 aa5.32□□□□□ -1.56
LIG3-212ENST00000590181 NAA38Q9BRA0 125 aaKnown RBP5.32□□□□□ -1.56
LIG3-212ENST00000590181 FAM236DA0A1B0GTK5 79 aa5.31□□□□□ -1.56
LIG3-212ENST00000590181 FAM236CP0DP71 79 aa5.31□□□□□ -1.56
LIG3-212ENST00000590181 BATFQ16520 125 aa5.31□□□□□ -1.56
LIG3-212ENST00000590181 PRR15Q8IV56 129 aa5.31□□□□□ -1.56
LIG3-212ENST00000590181 C8orf17Q9NRJ1 99 aa5.31□□□□□ -1.56
LIG3-212ENST00000590181 Q6ZVQ6 151 aa5.29□□□□□ -1.56
LIG3-212ENST00000590181 IGKV3D-7A0A0C4DH55 119 aa5.28□□□□□ -1.56
LIG3-212ENST00000590181 TAX1BP3O14907 124 aa5.28□□□□□ -1.56
LIG3-212ENST00000590181 HRES1P13985 223 aa5.28□□□□□ -1.56
LIG3-212ENST00000590181 SPINK7P58062 85 aa5.27□□□□□ -1.57
LIG3-212ENST00000590181 TMEM254Q8TBM7 123 aa5.27□□□□□ -1.57
LIG3-212ENST00000590181 SMCPP49901 116 aaPredicted RBP5.25□□□□□ -1.57
LIG3-212ENST00000590181 COL5A1-AS1Q5SY13 56 aa5.25□□□□□ -1.57
LIG3-212ENST00000590181 WFDC13Q8IUB5 93 aa5.25□□□□□ -1.57
LIG3-212ENST00000590181 hDV103S1A0JD37 113 aa5.24□□□□□ -1.57
LIG3-212ENST00000590181 BPY2O14599 106 aa5.24□□□□□ -1.57
LIG3-212ENST00000590181 MRPL34Q9BQ48 92 aaKnown RBP5.24□□□□□ -1.57
LIG3-212ENST00000590181 KRTAP9-8Q9BYQ0 159 aa5.24□□□□□ -1.57
LIG3-212ENST00000590181 MACF1Q9UPN3 7388 aaKnown RBP5.24□□□□□ -1.57
LIG3-212ENST00000590181 SYNE2Q8WXH0 6885 aaKnown RBP5.23□□□□□ -1.57
LIG3-212ENST00000590181 SPCS1Q9Y6A9 102 aa5.23□□□□□ -1.57
LIG3-212ENST00000590181 KRTAP19-1Q8IUB9 90 aa5.22□□□□□ -1.57
LIG3-212ENST00000590181 LOC100996750A0A140TA64 210 aa5.21□□□□□ -1.58
LIG3-212ENST00000590181 KRTAP4-6Q9BYQ5 205 aa5.21□□□□□ -1.58
LIG3-212ENST00000590181 MMP24-AS1A0A0U1RRL7 71 aa5.2□□□□□ -1.58
LIG3-212ENST00000590181 UBL5Q9BZL1 73 aa5.19□□□□□ -1.58
LIG3-212ENST00000590181 K7EQZ3 153 aa5.18□□□□□ -1.58
LIG3-212ENST00000590181 MT2AP02795 61 aa5.18□□□□□ -1.58
LIG3-212ENST00000590181 NDUFS5O43920 106 aa5.17□□□□□ -1.58
LIG3-212ENST00000590181 GTF2H5Q6ZYL4 71 aa5.17□□□□□ -1.58
LIG3-212ENST00000590181 CXCL6P80162 114 aa5.16□□□□□ -1.58
LIG3-212ENST00000590181 F8W1H4 67 aa5.15□□□□□ -1.59
LIG3-212ENST00000590181 CASC2Q6XLA1 102 aa5.15□□□□□ -1.59
LIG3-212ENST00000590181 K7EP34 96 aa5.14□□□□□ -1.59
LIG3-212ENST00000590181 MT1FP04733 61 aa5.14□□□□□ -1.59
LIG3-212ENST00000590181 C7orf65Q6ZTY9 151 aa5.13□□□□□ -1.59
LIG3-212ENST00000590181 PRO0461Q9UI25 63 aa5.13□□□□□ -1.59
LIG3-212ENST00000590181 H1FX-AS1Q4G0G2 97 aa5.12□□□□□ -1.59
LIG3-212ENST00000590181 KRTAP10-10P60014 251 aa5.11□□□□□ -1.59
LIG3-212ENST00000590181 TP53AIP1Q9HCN2 124 aa5.1□□□□□ -1.59
LIG3-212ENST00000590181 LINC00846Q9NV44 126 aa5.1□□□□□ -1.59
LIG3-212ENST00000590181 HCG22E2RYF7 251 aa5.09□□□□□ -1.59
LIG3-212ENST00000590181 KRTAP9-3Q9BYQ3 159 aa5.09□□□□□ -1.59
LIG3-212ENST00000590181 IGKV2D-30A0A075B6S6 120 aa5.06□□□□□ -1.6
LIG3-212ENST00000590181 IGKV2-30P06310 120 aa5.06□□□□□ -1.6
LIG3-212ENST00000590181 ACYP1P07311 99 aa5.06□□□□□ -1.6
LIG3-212ENST00000590181 Q5W150 140 aa5.06□□□□□ -1.6
LIG3-212ENST00000590181 Q8N9L7 120 aa5.05□□□□□ -1.6
LIG3-212ENST00000590181 KRTAP19-6Q3LI70 58 aa5.04□□□□□ -1.6
LIG3-212ENST00000590181 ETDBQ3ZM63 59 aa5.02□□□□□ -1.61
LIG3-212ENST00000590181 FAM240AA0A1B0GVK7 77 aa5□□□□□ -1.61
LIG3-212ENST00000590181 KRTAP6-3Q3LI67 103 aa5□□□□□ -1.61
LIG3-212ENST00000590181 NEBP20929 6669 aa4.99□□□□□ -1.61
LIG3-212ENST00000590181 ATP5EP2Q5VTU8 51 aa4.99□□□□□ -1.61
LIG3-212ENST00000590181 PCP4L1A6NKN8 68 aa4.98□□□□□ -1.61
LIG3-212ENST00000590181 C4orf26Q17RF5 130 aa4.97□□□□□ -1.61
LIG3-212ENST00000590181 CSAG1Q6PB30 78 aa4.94□□□□□ -1.62
LIG3-212ENST00000590181 C1orf64Q8NEQ6 169 aa4.94□□□□□ -1.62
LIG3-212ENST00000590181 LOC101927531A0A1B0GV80 90 aa4.92□□□□□ -1.62
LIG3-212ENST00000590181 ATOX1O00244 68 aa4.92□□□□□ -1.62
LIG3-212ENST00000590181 TRAV22A0A0B4J277 110 aa4.91□□□□□ -1.62
LIG3-212ENST00000590181 S4R3F8 94 aa4.91□□□□□ -1.62
LIG3-212ENST00000590181 CYP4F30PQ9H0H9 118 aa4.9□□□□□ -1.63
LIG3-212ENST00000590181 UQCRQO14949 82 aa4.89□□□□□ -1.63
LIG3-212ENST00000590181 LINC00643Q86TS7 51 aa4.88□□□□□ -1.63
LIG3-212ENST00000590181 KRTAP3-1Q9BYR8 98 aa4.88□□□□□ -1.63
LIG3-212ENST00000590181 MUC12Q9UKN1 5478 aa4.87□□□□□ -1.63
LIG3-212ENST00000590181 HIST1H4AP62805 103 aaKnown RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms