RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 KRTAP29-1A8MX34 341 aaPredicted RBP6.41□□□□□ -1.38
ZNF540-208ENST00000589857 IGLV7-43P04211 117 aa6.41□□□□□ -1.38
ZNF540-208ENST00000589857 CD164Q04900 197 aa6.41□□□□□ -1.38
ZNF540-208ENST00000589857 DEFB116Q30KQ4 102 aa6.41□□□□□ -1.38
ZNF540-208ENST00000589857 Q5VSD8 79 aa6.41□□□□□ -1.38
ZNF540-208ENST00000589857 HERC1Q15751 4861 aa6.41□□□□□ -1.38
ZNF540-208ENST00000589857 KRTAP10-2P60368 255 aa6.4□□□□□ -1.38
ZNF540-208ENST00000589857 TP53AIP1Q9HCN2 124 aa6.4□□□□□ -1.38
ZNF540-208ENST00000589857 hDV103S1A0JD37 113 aa6.39□□□□□ -1.39
ZNF540-208ENST00000589857 ZCCHC13Q8WW36 166 aaKnown RBP6.39□□□□□ -1.39
ZNF540-208ENST00000589857 LRP1BQ9NZR2 4599 aa6.38□□□□□ -1.39
ZNF540-208ENST00000589857 SSBP3-AS1Q7Z2R9 100 aa6.38□□□□□ -1.39
ZNF540-208ENST00000589857 DNAH5Q8TE73 4624 aa6.37□□□□□ -1.39
ZNF540-208ENST00000589857 MMP24-AS1A0A0U1RRL7 71 aa6.36□□□□□ -1.39
ZNF540-208ENST00000589857 H0Y9P7 68 aa6.36□□□□□ -1.39
ZNF540-208ENST00000589857 SVIPQ8NHG7 77 aa6.36□□□□□ -1.39
ZNF540-208ENST00000589857 APOBP04114 4563 aaKnown RBP6.35□□□□□ -1.39
ZNF540-208ENST00000589857 A0A1B0GVX0 72 aa6.35□□□□□ -1.39
ZNF540-208ENST00000589857 OXTP01178 125 aa6.34□□□□□ -1.39
ZNF540-208ENST00000589857 Q96NJ1 140 aa6.34□□□□□ -1.39
ZNF540-208ENST00000589857 C8orf17Q9NRJ1 99 aa6.34□□□□□ -1.39
ZNF540-208ENST00000589857 TRAV22A0A0B4J277 110 aa6.33□□□□□ -1.4
ZNF540-208ENST00000589857 PLA2G1BP04054 148 aaKnown RBP6.33□□□□□ -1.4
ZNF540-208ENST00000589857 FAM229BQ4G0N7 80 aa6.33□□□□□ -1.4
ZNF540-208ENST00000589857 SPANXA2-OT1Q8N9U9 137 aa6.33□□□□□ -1.4
ZNF540-208ENST00000589857 CYP4F30PQ9H0H9 118 aa6.33□□□□□ -1.4
ZNF540-208ENST00000589857 ASB16-AS1Q495Z4 193 aa6.32□□□□□ -1.4
ZNF540-208ENST00000589857 HRCT1Q6UXD1 115 aa6.32□□□□□ -1.4
ZNF540-208ENST00000589857 CIRBP-AS1Q8TBR5 109 aa6.32□□□□□ -1.4
ZNF540-208ENST00000589857 LINC00208Q96KT6 92 aa6.32□□□□□ -1.4
ZNF540-208ENST00000589857 SMR3BP02814 79 aaPredicted RBP6.31□□□□□ -1.4
ZNF540-208ENST00000589857 Q6ZSA8 131 aa6.31□□□□□ -1.4
ZNF540-208ENST00000589857 C8orf87E5RJ46 101 aa6.3□□□□□ -1.4
ZNF540-208ENST00000589857 IGHV6-1A0A0B4J1U7 121 aa6.29□□□□□ -1.4
ZNF540-208ENST00000589857 Q5XG85 94 aa6.29□□□□□ -1.4
ZNF540-208ENST00000589857 C1orf64Q8NEQ6 169 aa6.29□□□□□ -1.4
ZNF540-208ENST00000589857 KRTAP10-1P60331 282 aa6.28□□□□□ -1.4
ZNF540-208ENST00000589857 MRPL34Q9BQ48 92 aaKnown RBP6.28□□□□□ -1.4
ZNF540-208ENST00000589857 LIMD2Q9BT23 127 aa6.27□□□□□ -1.41
ZNF540-208ENST00000589857 ANAPC11Q9NYG5 84 aa6.26□□□□□ -1.41
ZNF540-208ENST00000589857 SRRM2Q9UQ35 2752 aaKnown RBP6.25□□□□□ -1.41
ZNF540-208ENST00000589857 NDUFS5O43920 106 aa6.25□□□□□ -1.41
ZNF540-208ENST00000589857 V9GYY9 64 aa6.25□□□□□ -1.41
ZNF540-208ENST00000589857 FLG2Q5D862 2391 aaPredicted RBP6.23□□□□□ -1.41
ZNF540-208ENST00000589857 C4orf26Q17RF5 130 aa6.23□□□□□ -1.41
ZNF540-208ENST00000589857 MYCBP2O75592 4640 aa6.22□□□□□ -1.41
ZNF540-208ENST00000589857 LOC101927531A0A1B0GV80 90 aa6.22□□□□□ -1.41
ZNF540-208ENST00000589857 FP248Q71RG6 208 aaPredicted RBP6.22□□□□□ -1.41
ZNF540-208ENST00000589857 SPINK6Q6UWN8 80 aa6.21□□□□□ -1.42
ZNF540-208ENST00000589857 IGLV7-46A0A075B6I9 117 aa6.2□□□□□ -1.42
ZNF540-208ENST00000589857 VPS13BQ7Z7G8 4022 aa6.19□□□□□ -1.42
ZNF540-208ENST00000589857 Q1T7F1 81 aa6.18□□□□□ -1.42
ZNF540-208ENST00000589857 C1orf195Q5TG92 126 aa6.18□□□□□ -1.42
ZNF540-208ENST00000589857 FAT1Q14517 4588 aa6.18□□□□□ -1.42
ZNF540-208ENST00000589857 LINC00313P59037 77 aa6.16□□□□□ -1.42
ZNF540-208ENST00000589857 UBR4Q5T4S7 5183 aa6.15□□□□□ -1.42
ZNF540-208ENST00000589857 SPINK1P00995 79 aa6.15□□□□□ -1.42
ZNF540-208ENST00000589857 RPS29P62273 56 aaKnown RBP6.15□□□□□ -1.42
ZNF540-208ENST00000589857 PRR4Q16378 134 aa6.15□□□□□ -1.42
ZNF540-208ENST00000589857 KRTAP13-2Q52LG2 175 aa6.15□□□□□ -1.42
ZNF540-208ENST00000589857 MPLKIPQ8TAP9 179 aa6.15□□□□□ -1.42
ZNF540-208ENST00000589857 A0A087X002 238 aa6.14□□□□□ -1.43
ZNF540-208ENST00000589857 SPAG11AQ6PDA7 123 aa6.14□□□□□ -1.43
ZNF540-208ENST00000589857 TYMSOSQ8TAI1 123 aa6.14□□□□□ -1.43
ZNF540-208ENST00000589857 KRTAP1-4P0C5Y4 121 aa6.12□□□□□ -1.43
ZNF540-208ENST00000589857 PCOTHQ58A44 107 aa6.11□□□□□ -1.43
ZNF540-208ENST00000589857 PRO0628Q9UI54 55 aa6.11□□□□□ -1.43
ZNF540-208ENST00000589857 DNAH8Q96JB1 4490 aa6.11□□□□□ -1.43
ZNF540-208ENST00000589857 COA5Q86WW8 74 aa6.1□□□□□ -1.43
ZNF540-208ENST00000589857 Q8N9P0 234 aaPredicted RBP6.1□□□□□ -1.43
ZNF540-208ENST00000589857 NOTCH2NLQ7Z3S9 236 aa6.09□□□□□ -1.43
ZNF540-208ENST00000589857 KRTAP13-3Q3SY46 172 aa6.07□□□□□ -1.44
ZNF540-208ENST00000589857 LINC00304Q8N9R0 145 aa6.07□□□□□ -1.44
ZNF540-208ENST00000589857 HMCN2Q8NDA2 5059 aa6.07□□□□□ -1.44
ZNF540-208ENST00000589857 ACYP2P14621 99 aa6.04□□□□□ -1.44
ZNF540-208ENST00000589857 Q5W150 140 aa6.03□□□□□ -1.44
ZNF540-208ENST00000589857 BRK1Q8WUW1 75 aa6.03□□□□□ -1.44
ZNF540-208ENST00000589857 KRTAP16-1A8MUX0 517 aa6.01□□□□□ -1.45
ZNF540-208ENST00000589857 IGKV2-30P06310 120 aa6.01□□□□□ -1.45
ZNF540-208ENST00000589857 KRTAP10-4P60372 401 aaPredicted RBP6.01□□□□□ -1.45
ZNF540-208ENST00000589857 XP32Q5T750 250 aa6.01□□□□□ -1.45
ZNF540-208ENST00000589857 PSPHP1O15172 72 aa5.99□□□□□ -1.45
ZNF540-208ENST00000589857 CHKB-CPT1BH3BT56 60 aa5.98□□□□□ -1.45
ZNF540-208ENST00000589857 HRES1P13985 223 aa5.98□□□□□ -1.45
ZNF540-208ENST00000589857 PRR26Q8N8Z3 221 aa5.98□□□□□ -1.45
ZNF540-208ENST00000589857 DMAC1Q96GE9 116 aa5.98□□□□□ -1.45
ZNF540-208ENST00000589857 LINC01558Q9Y6Z2 57 aa5.98□□□□□ -1.45
ZNF540-208ENST00000589857 A8MUN3 132 aa5.97□□□□□ -1.45
ZNF540-208ENST00000589857 PRR15LQ9BU68 103 aa5.97□□□□□ -1.45
ZNF540-208ENST00000589857 Q75L30 129 aa5.96□□□□□ -1.46
ZNF540-208ENST00000589857 LRP1Q07954 4544 aaKnown RBP5.95□□□□□ -1.46
ZNF540-208ENST00000589857 Q5VV11 94 aa5.94□□□□□ -1.46
ZNF540-208ENST00000589857 C7orf65Q6ZTY9 151 aa5.93□□□□□ -1.46
ZNF540-208ENST00000589857 MT1HL1P0DM35 61 aa5.92□□□□□ -1.46
ZNF540-208ENST00000589857 KRTAP4-8Q9BYQ9 185 aa5.92□□□□□ -1.46
ZNF540-208ENST00000589857 IGKV2D-30A0A075B6S6 120 aa5.91□□□□□ -1.46
ZNF540-208ENST00000589857 RETNLBQ9BQ08 111 aa5.91□□□□□ -1.46
ZNF540-208ENST00000589857 FAT3Q8TDW7 4589 aa5.91□□□□□ -1.46
ZNF540-208ENST00000589857 RNF213Q63HN8 5207 aa5.91□□□□□ -1.46
ZNF540-208ENST00000589857 A6NED7 52 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms