RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 Q8N9L7 120 aa2.65□□□□□ -1.99
LIG3-211ENST00000588713 Q8NBF4 154 aa2.65□□□□□ -1.99
LIG3-211ENST00000588713 H3BPC8 53 aa2.64□□□□□ -1.99
LIG3-211ENST00000588713 UBE2AP49459 152 aa2.64□□□□□ -1.99
LIG3-211ENST00000588713 CD164Q04900 197 aa2.64□□□□□ -1.99
LIG3-211ENST00000588713 SPANXA2-OT1Q8N9U9 137 aa2.64□□□□□ -1.99
LIG3-211ENST00000588713 C1orf64Q8NEQ6 169 aa2.64□□□□□ -1.99
LIG3-211ENST00000588713 SPRR4Q96PI1 79 aa2.64□□□□□ -1.99
LIG3-211ENST00000588713 Q9BRP9 147 aa2.64□□□□□ -1.99
LIG3-211ENST00000588713 DHRS4-AS1Q9P1J3 65 aa2.64□□□□□ -1.99
LIG3-211ENST00000588713 IGLV5-37A0A075B6J1 123 aa2.63□□□□□ -1.99
LIG3-211ENST00000588713 A0A096LPF7 62 aa2.63□□□□□ -1.99
LIG3-211ENST00000588713 HCG22E2RYF7 251 aa2.63□□□□□ -1.99
LIG3-211ENST00000588713 PANO1I0J062 215 aa2.63□□□□□ -1.99
LIG3-211ENST00000588713 PSCAO43653 123 aa2.63□□□□□ -1.99
LIG3-211ENST00000588713 RPL37AP61513 92 aaKnown RBP2.63□□□□□ -1.99
LIG3-211ENST00000588713 CAMK2N2Q96S95 79 aa2.63□□□□□ -1.99
LIG3-211ENST00000588713 KCNQ1DNQ9H478 68 aa2.63□□□□□ -1.99
LIG3-211ENST00000588713 XAGE1AQ9HD64 81 aa2.63□□□□□ -1.99
LIG3-211ENST00000588713 SYNE2Q8WXH0 6885 aaKnown RBP2.62□□□□□ -1.99
LIG3-211ENST00000588713 TRAV22A0A0B4J277 110 aa2.62□□□□□ -1.99
LIG3-211ENST00000588713 SPART-AS1P0CW21 52 aa2.62□□□□□ -1.99
LIG3-211ENST00000588713 DSCR10P59022 87 aa2.62□□□□□ -1.99
LIG3-211ENST00000588713 C1orf137Q5JT78 98 aa2.62□□□□□ -1.99
LIG3-211ENST00000588713 Q6ZRX8 168 aa2.62□□□□□ -1.99
LIG3-211ENST00000588713 MRPL55Q7Z7F7 128 aaKnown RBP2.62□□□□□ -1.99
LIG3-211ENST00000588713 Q8N377 158 aa2.62□□□□□ -1.99
LIG3-211ENST00000588713 C15orf56Q8N910 161 aa2.62□□□□□ -1.99
LIG3-211ENST00000588713 KLK12Q9UKR0 248 aa2.62□□□□□ -1.99
LIG3-211ENST00000588713 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.61□□□□□ -1.99
LIG3-211ENST00000588713 A0A1W2PNM2 257 aa2.61□□□□□ -1.99
LIG3-211ENST00000588713 H3BNG1 76 aa2.61□□□□□ -1.99
LIG3-211ENST00000588713 TLX1NBP0CAT3 122 aa2.61□□□□□ -1.99
LIG3-211ENST00000588713 SPRR1AP35321 89 aa2.61□□□□□ -1.99
LIG3-211ENST00000588713 MP68P56378 58 aa2.61□□□□□ -1.99
LIG3-211ENST00000588713 KRTAP26-1Q6PEX3 210 aa2.61□□□□□ -1.99
LIG3-211ENST00000588713 KTN1-AS1Q86SY8 53 aa2.61□□□□□ -1.99
LIG3-211ENST00000588713 NKAPP1Q8N9T2 125 aa2.61□□□□□ -1.99
LIG3-211ENST00000588713 LIMD2Q9BT23 127 aa2.61□□□□□ -1.99
LIG3-211ENST00000588713 KRTAP4-16G5E9R7 235 aaPredicted RBP2.6□□□□□ -1.99
LIG3-211ENST00000588713 K7EQZ3 153 aa2.6□□□□□ -1.99
LIG3-211ENST00000588713 Q5VV11 94 aa2.6□□□□□ -1.99
LIG3-211ENST00000588713 Q75L30 129 aa2.6□□□□□ -1.99
LIG3-211ENST00000588713 C7orf33Q8WU49 177 aa2.6□□□□□ -1.99
LIG3-211ENST00000588713 LINC00208Q96KT6 92 aa2.6□□□□□ -1.99
LIG3-211ENST00000588713 PSPHP1O15172 72 aa2.59□□□□□ -1.99
LIG3-211ENST00000588713 NDUFS5O43920 106 aa2.59□□□□□ -1.99
LIG3-211ENST00000588713 SYCNQ0VAF6 134 aa2.59□□□□□ -1.99
LIG3-211ENST00000588713 ST20-AS1Q8NBB2 130 aa2.59□□□□□ -1.99
LIG3-211ENST00000588713 IGLV8-61A0A075B6I0 122 aa2.58□□□□□ -2
LIG3-211ENST00000588713 IGKV2D-24A0A075B6R9 120 aa2.58□□□□□ -2
LIG3-211ENST00000588713 LOC101927531A0A1B0GV80 90 aa2.58□□□□□ -2
LIG3-211ENST00000588713 A8MUN3 132 aa2.58□□□□□ -2
LIG3-211ENST00000588713 Q6ZSA8 131 aa2.58□□□□□ -2
LIG3-211ENST00000588713 SSPOA2VEC9 5147 aa2.57□□□□□ -2
LIG3-211ENST00000588713 IGLV1-50A0A075B6I6 118 aa2.57□□□□□ -2
LIG3-211ENST00000588713 RPL37AP8A6NKH3 93 aa2.57□□□□□ -2
LIG3-211ENST00000588713 H0Y9P7 68 aa2.57□□□□□ -2
LIG3-211ENST00000588713 LINC01556Q5JQF7 62 aa2.57□□□□□ -2
LIG3-211ENST00000588713 WFDC10BQ8IUB3 73 aa2.57□□□□□ -2
LIG3-211ENST00000588713 Q8N9P0 234 aaPredicted RBP2.57□□□□□ -2
LIG3-211ENST00000588713 C9orf163Q8N9P6 203 aa2.57□□□□□ -2
LIG3-211ENST00000588713 DEFB105AQ8NG35 78 aa2.57□□□□□ -2
LIG3-211ENST00000588713 CIRBP-AS1Q8TBR5 109 aa2.57□□□□□ -2
LIG3-211ENST00000588713 PRR15LQ9BU68 103 aa2.57□□□□□ -2
LIG3-211ENST00000588713 ATP11AUNQ6ZP68 121 aa2.56□□□□□ -2
LIG3-211ENST00000588713 CDC42SE1Q9NRR8 79 aa2.56□□□□□ -2
LIG3-211ENST00000588713 LRCOL1A6NCL2 159 aa2.55□□□□□ -2
LIG3-211ENST00000588713 A6NN06 94 aa2.55□□□□□ -2
LIG3-211ENST00000588713 CHKB-CPT1BH3BT56 60 aa2.55□□□□□ -2
LIG3-211ENST00000588713 IGFL1Q6UW32 110 aa2.55□□□□□ -2
LIG3-211ENST00000588713 CASC2Q6XLA1 102 aa2.55□□□□□ -2
LIG3-211ENST00000588713 C7orf65Q6ZTY9 151 aa2.55□□□□□ -2
LIG3-211ENST00000588713 PHF5AQ7RTV0 110 aaKnown RBP2.55□□□□□ -2
LIG3-211ENST00000588713 PLAC8Q9NZF1 115 aa2.55□□□□□ -2
LIG3-211ENST00000588713 NEBP20929 6669 aa2.54□□□□□ -2
LIG3-211ENST00000588713 A8MWP4 228 aa2.54□□□□□ -2
LIG3-211ENST00000588713 MOBPQ13875 183 aa2.54□□□□□ -2
LIG3-211ENST00000588713 PRR4Q16378 134 aa2.54□□□□□ -2
LIG3-211ENST00000588713 REG3GQ6UW15 175 aa2.54□□□□□ -2
LIG3-211ENST00000588713 COA5Q86WW8 74 aa2.54□□□□□ -2
LIG3-211ENST00000588713 WFDC13Q8IUB5 93 aa2.54□□□□□ -2
LIG3-211ENST00000588713 RBM12B-AS1Q9P1G2 102 aa2.54□□□□□ -2
LIG3-211ENST00000588713 IGLV7-46A0A075B6I9 117 aa2.53□□□□□ -2
LIG3-211ENST00000588713 A0A087WSZ3 146 aa2.53□□□□□ -2
LIG3-211ENST00000588713 A6NED7 52 aa2.53□□□□□ -2
LIG3-211ENST00000588713 SPRR1BP22528 89 aa2.53□□□□□ -2
LIG3-211ENST00000588713 CNBPP62633 177 aaKnown RBP2.53□□□□□ -2
LIG3-211ENST00000588713 TP53AIP1Q9HCN2 124 aa2.53□□□□□ -2
LIG3-211ENST00000588713 LINC01558Q9Y6Z2 57 aa2.53□□□□□ -2
LIG3-211ENST00000588713 MACF1Q9UPN3 7388 aaKnown RBP2.53□□□□□ -2
LIG3-211ENST00000588713 MMP24-AS1A0A0U1RRL7 71 aa2.52□□□□□ -2.01
LIG3-211ENST00000588713 LCA10Q71F78 164 aa2.52□□□□□ -2.01
LIG3-211ENST00000588713 USH2AO75445 5202 aa2.51□□□□□ -2.01
LIG3-211ENST00000588713 FAM168BA1KXE4 195 aa2.51□□□□□ -2.01
LIG3-211ENST00000588713 H0Y9J4 135 aa2.51□□□□□ -2.01
LIG3-211ENST00000588713 KRTAP20-1Q3LI63 56 aa2.51□□□□□ -2.01
LIG3-211ENST00000588713 ASB16-AS1Q495Z4 193 aa2.51□□□□□ -2.01
LIG3-211ENST00000588713 KRTAP7-1Q8IUC3 87 aa2.51□□□□□ -2.01
LIG3-211ENST00000588713 SPTSSBQ8NFR3 76 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms