RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 C8orf87E5RJ46 101 aa7.31□□□□□ -1.24
SMARCE1-216ENST00000580419 UQCR10Q9UDW1 63 aa7.31□□□□□ -1.24
SMARCE1-216ENST00000580419 RBM12B-AS1Q9P1G2 102 aa7.29□□□□□ -1.24
SMARCE1-216ENST00000580419 A0A1B0GW54 56 aa7.28□□□□□ -1.24
SMARCE1-216ENST00000580419 J3KT08 172 aa7.28□□□□□ -1.24
SMARCE1-216ENST00000580419 K7ERJ3 54 aa7.28□□□□□ -1.24
SMARCE1-216ENST00000580419 RBM3P98179 157 aaKnown RBP7.28□□□□□ -1.24
SMARCE1-216ENST00000580419 HRES1P13985 223 aa7.27□□□□□ -1.25
SMARCE1-216ENST00000580419 NOTCH2NLQ7Z3S9 236 aa7.27□□□□□ -1.25
SMARCE1-216ENST00000580419 DSCR8Q96T75 97 aa7.27□□□□□ -1.25
SMARCE1-216ENST00000580419 KRTAP4-9Q9BYQ8 210 aa7.27□□□□□ -1.25
SMARCE1-216ENST00000580419 A0A1B0GVX0 72 aa7.26□□□□□ -1.25
SMARCE1-216ENST00000580419 IGHV6-1A0A0B4J1U7 121 aa7.24□□□□□ -1.25
SMARCE1-216ENST00000580419 USH2AO75445 5202 aa7.23□□□□□ -1.25
SMARCE1-216ENST00000580419 FAM236DA0A1B0GTK5 79 aa7.22□□□□□ -1.25
SMARCE1-216ENST00000580419 C9JAW5 83 aa7.22□□□□□ -1.25
SMARCE1-216ENST00000580419 SCGB1C2P0DMR2 95 aa7.22□□□□□ -1.25
SMARCE1-216ENST00000580419 FAM236CP0DP71 79 aa7.22□□□□□ -1.25
SMARCE1-216ENST00000580419 DEFB116Q30KQ4 102 aa7.21□□□□□ -1.26
SMARCE1-216ENST00000580419 Q6ZQT0 140 aa7.21□□□□□ -1.26
SMARCE1-216ENST00000580419 MTURNQ8N3F0 131 aa7.21□□□□□ -1.26
SMARCE1-216ENST00000580419 BAALC-AS2P0C853 105 aa7.2□□□□□ -1.26
SMARCE1-216ENST00000580419 Q8N9P0 234 aaPredicted RBP7.2□□□□□ -1.26
SMARCE1-216ENST00000580419 A0A1B0GV72 72 aa7.19□□□□□ -1.26
SMARCE1-216ENST00000580419 JMJD7-PLA2G4BH0Y9G9 81 aa7.19□□□□□ -1.26
SMARCE1-216ENST00000580419 MT2AP02795 61 aa7.19□□□□□ -1.26
SMARCE1-216ENST00000580419 PDE6GP18545 87 aa7.19□□□□□ -1.26
SMARCE1-216ENST00000580419 ZCCHC13Q8WW36 166 aaKnown RBP7.19□□□□□ -1.26
SMARCE1-216ENST00000580419 SSPOA2VEC9 5147 aa7.19□□□□□ -1.26
SMARCE1-216ENST00000580419 NDUFB1O75438 58 aa7.18□□□□□ -1.26
SMARCE1-216ENST00000580419 KRTAP4-2Q9BYR5 136 aa7.18□□□□□ -1.26
SMARCE1-216ENST00000580419 VPS25Q9BRG1 176 aa7.17□□□□□ -1.26
SMARCE1-216ENST00000580419 LOC110117498A0A087WWA1 95 aa7.16□□□□□ -1.26
SMARCE1-216ENST00000580419 M0R143 59 aa7.14□□□□□ -1.27
SMARCE1-216ENST00000580419 A8MWP4 228 aa7.13□□□□□ -1.27
SMARCE1-216ENST00000580419 SPINK7P58062 85 aa7.13□□□□□ -1.27
SMARCE1-216ENST00000580419 ATXN8Q156A1 80 aa7.13□□□□□ -1.27
SMARCE1-216ENST00000580419 MT1FP04733 61 aa7.12□□□□□ -1.27
SMARCE1-216ENST00000580419 KRTAP9-3Q9BYQ3 159 aa7.12□□□□□ -1.27
SMARCE1-216ENST00000580419 C8orf17Q9NRJ1 99 aa7.09□□□□□ -1.27
SMARCE1-216ENST00000580419 KRTAP10-10P60014 251 aa7.08□□□□□ -1.28
SMARCE1-216ENST00000580419 LYRM7Q5U5X0 104 aa7.08□□□□□ -1.28
SMARCE1-216ENST00000580419 FCGBPQ9Y6R7 5405 aaPredicted RBP7.07□□□□□ -1.28
SMARCE1-216ENST00000580419 IGKV3D-7A0A0C4DH55 119 aa7.06□□□□□ -1.28
SMARCE1-216ENST00000580419 KRTAP9-7A8MTY7 169 aa7.05□□□□□ -1.28
SMARCE1-216ENST00000580419 Q6ZVQ6 151 aa7.05□□□□□ -1.28
SMARCE1-216ENST00000580419 PRR15Q8IV56 129 aa7.05□□□□□ -1.28
SMARCE1-216ENST00000580419 TMA7Q9Y2S6 64 aaKnown RBP7.04□□□□□ -1.28
SMARCE1-216ENST00000580419 NREPQ16612 68 aa7.01□□□□□ -1.29
SMARCE1-216ENST00000580419 TMEM254Q8TBM7 123 aa7.01□□□□□ -1.29
SMARCE1-216ENST00000580419 SMIM6P0DI80 62 aa7□□□□□ -1.29
SMARCE1-216ENST00000580419 WFDC13Q8IUB5 93 aa7□□□□□ -1.29
SMARCE1-216ENST00000580419 C14orf132Q9NPU4 83 aa7□□□□□ -1.29
SMARCE1-216ENST00000580419 MRPL34Q9BQ48 92 aaKnown RBP6.99□□□□□ -1.29
SMARCE1-216ENST00000580419 LINC00846Q9NV44 126 aa6.98□□□□□ -1.29
SMARCE1-216ENST00000580419 MMP24-AS1A0A0U1RRL7 71 aa6.97□□□□□ -1.29
SMARCE1-216ENST00000580419 H3BT86 120 aa6.96□□□□□ -1.3
SMARCE1-216ENST00000580419 KRTAP4-11Q9BYQ6 195 aa6.96□□□□□ -1.3
SMARCE1-216ENST00000580419 NAA38Q9BRA0 125 aaKnown RBP6.95□□□□□ -1.3
SMARCE1-216ENST00000580419 hDV103S1A0JD37 113 aa6.94□□□□□ -1.3
SMARCE1-216ENST00000580419 KRTAP19-6Q3LI70 58 aa6.93□□□□□ -1.3
SMARCE1-216ENST00000580419 TSTD3H0UI37 97 aa6.92□□□□□ -1.3
SMARCE1-216ENST00000580419 H1FX-AS1Q4G0G2 97 aa6.92□□□□□ -1.3
SMARCE1-216ENST00000580419 MACF1Q9UPN3 7388 aaKnown RBP6.89□□□□□ -1.31
SMARCE1-216ENST00000580419 C9orf118A6NHY6 69 aa6.89□□□□□ -1.31
SMARCE1-216ENST00000580419 K7EQZ3 153 aa6.89□□□□□ -1.31
SMARCE1-216ENST00000580419 BPY2O14599 106 aa6.87□□□□□ -1.31
SMARCE1-216ENST00000580419 C7orf65Q6ZTY9 151 aa6.86□□□□□ -1.31
SMARCE1-216ENST00000580419 A0A1W2PPM0 123 aa6.85□□□□□ -1.31
SMARCE1-216ENST00000580419 NDUFS5O43920 106 aa6.83□□□□□ -1.32
SMARCE1-216ENST00000580419 LCE4AQ5TA78 99 aa6.83□□□□□ -1.32
SMARCE1-216ENST00000580419 TAX1BP3O14907 124 aa6.82□□□□□ -1.32
SMARCE1-216ENST00000580419 Q5W150 140 aa6.81□□□□□ -1.32
SMARCE1-216ENST00000580419 CXCL6P80162 114 aa6.8□□□□□ -1.32
SMARCE1-216ENST00000580419 BATFQ16520 125 aa6.8□□□□□ -1.32
SMARCE1-216ENST00000580419 SYNE2Q8WXH0 6885 aaKnown RBP6.8□□□□□ -1.32
SMARCE1-216ENST00000580419 CASC2Q6XLA1 102 aa6.79□□□□□ -1.32
SMARCE1-216ENST00000580419 IGKV2D-30A0A075B6S6 120 aa6.78□□□□□ -1.32
SMARCE1-216ENST00000580419 IGKV2-30P06310 120 aa6.78□□□□□ -1.32
SMARCE1-216ENST00000580419 HCG22E2RYF7 251 aa6.74□□□□□ -1.33
SMARCE1-216ENST00000580419 SPCS1Q9Y6A9 102 aa6.72□□□□□ -1.33
SMARCE1-216ENST00000580419 UBL5Q9BZL1 73 aa6.71□□□□□ -1.34
SMARCE1-216ENST00000580419 Q8N9L7 120 aa6.7□□□□□ -1.34
SMARCE1-216ENST00000580419 C4orf26Q17RF5 130 aa6.69□□□□□ -1.34
SMARCE1-216ENST00000580419 LOC105371267A0A1B0GV96 52 aa6.67□□□□□ -1.34
SMARCE1-216ENST00000580419 KRTAP6-3Q3LI67 103 aa6.67□□□□□ -1.34
SMARCE1-216ENST00000580419 TP53AIP1Q9HCN2 124 aa6.67□□□□□ -1.34
SMARCE1-216ENST00000580419 LCE5AQ5TCM9 118 aa6.66□□□□□ -1.34
SMARCE1-216ENST00000580419 PRO0461Q9UI25 63 aa6.66□□□□□ -1.34
SMARCE1-216ENST00000580419 COL5A1-AS1Q5SY13 56 aa6.64□□□□□ -1.35
SMARCE1-216ENST00000580419 KRTAP3-1Q9BYR8 98 aa6.64□□□□□ -1.35
SMARCE1-216ENST00000580419 KRTAP5-3Q6L8H2 238 aa6.63□□□□□ -1.35
SMARCE1-216ENST00000580419 CSAG1Q6PB30 78 aa6.62□□□□□ -1.35
SMARCE1-216ENST00000580419 SPRR2GQ9BYE4 73 aa6.61□□□□□ -1.35
SMARCE1-216ENST00000580419 K7EP34 96 aa6.6□□□□□ -1.35
SMARCE1-216ENST00000580419 S4R3F8 94 aa6.6□□□□□ -1.35
SMARCE1-216ENST00000580419 C1orf64Q8NEQ6 169 aa6.59□□□□□ -1.35
SMARCE1-216ENST00000580419 C5orf47Q569G3 176 aa6.58□□□□□ -1.36
SMARCE1-216ENST00000580419 KRTAP19-8Q3LI54 63 aa6.57□□□□□ -1.36
SMARCE1-216ENST00000580419 KRTAP19-4Q3LI73 84 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms