RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 LAMA2P24043 3122 aaKnown RBP1.49□□□□□ -2.17
NUP88-208ENST00000574087 NBPF19A0A087WUL8 3843 aa1.48□□□□□ -2.17
NUP88-208ENST00000574087 ZDBF2Q9HCK1 2354 aa1.48□□□□□ -2.17
NUP88-208ENST00000574087 S4R3F8 94 aa1.48□□□□□ -2.17
NUP88-208ENST00000574087 ASH1LQ9NR48 2969 aaKnown RBP1.48□□□□□ -2.17
NUP88-208ENST00000574087 DSPP15924 2871 aaKnown RBP1.47□□□□□ -2.17
NUP88-208ENST00000574087 MAP1AP78559 2803 aaPredicted RBP1.47□□□□□ -2.17
NUP88-208ENST00000574087 CSMD1Q96PZ7 3565 aa1.47□□□□□ -2.17
NUP88-208ENST00000574087 IGF2RP11717 2491 aa1.47□□□□□ -2.17
NUP88-208ENST00000574087 SMG1Q96Q15 3661 aaKnown RBP1.46□□□□□ -2.18
NUP88-208ENST00000574087 TPRP12270 2363 aaKnown RBP1.46□□□□□ -2.18
NUP88-208ENST00000574087 JMJD1CQ15652 2540 aa1.46□□□□□ -2.18
NUP88-208ENST00000574087 BRCA2P51587 3418 aa1.46□□□□□ -2.18
NUP88-208ENST00000574087 PRRC2CQ9Y520 2896 aaKnown RBP1.46□□□□□ -2.18
NUP88-208ENST00000574087 FBN3Q75N90 2809 aa1.45□□□□□ -2.18
NUP88-208ENST00000574087 CEP250Q9BV73 2442 aa1.45□□□□□ -2.18
NUP88-208ENST00000574087 VCANP13611 3396 aa1.45□□□□□ -2.18
NUP88-208ENST00000574087 A0A0D9SG42 100 aa1.45□□□□□ -2.18
NUP88-208ENST00000574087 LAMA3Q16787 3333 aa1.45□□□□□ -2.18
NUP88-208ENST00000574087 PKDREJQ9NTG1 2253 aa1.45□□□□□ -2.18
NUP88-208ENST00000574087 LRBAP50851 2863 aa1.45□□□□□ -2.18
NUP88-208ENST00000574087 CELSR1Q9NYQ6 3014 aa1.45□□□□□ -2.18
NUP88-208ENST00000574087 FREM2Q5SZK8 3169 aa1.45□□□□□ -2.18
NUP88-208ENST00000574087 SPEGQ15772 3267 aa1.44□□□□□ -2.18
NUP88-208ENST00000574087 REV3LO60673 3130 aa1.44□□□□□ -2.18
NUP88-208ENST00000574087 VPS13DQ5THJ4 4388 aa1.44□□□□□ -2.18
NUP88-208ENST00000574087 HTTP42858 3142 aa1.44□□□□□ -2.18
NUP88-208ENST00000574087 MAP1BP46821 2468 aaKnown RBP1.44□□□□□ -2.18
NUP88-208ENST00000574087 DMXL1Q9Y485 3027 aa1.43□□□□□ -2.18
NUP88-208ENST00000574087 LAMA5O15230 3695 aa1.43□□□□□ -2.18
NUP88-208ENST00000574087 PTPRZ1P23471 2315 aaPredicted RBP1.43□□□□□ -2.18
NUP88-208ENST00000574087 PCNX1Q96RV3 2341 aa1.43□□□□□ -2.18
NUP88-208ENST00000574087 Q5VSD8 79 aa1.43□□□□□ -2.18
NUP88-208ENST00000574087 DNAH1Q9P2D7 4330 aa1.43□□□□□ -2.18
NUP88-208ENST00000574087 EP300Q09472 2414 aaPredicted RBP1.42□□□□□ -2.18
NUP88-208ENST00000574087 FAM186AA6NE01 2351 aa1.42□□□□□ -2.18
NUP88-208ENST00000574087 M0QZ58 72 aa1.42□□□□□ -2.18
NUP88-208ENST00000574087 RP1L1Q8IWN7 2480 aaPredicted RBP1.41□□□□□ -2.18
NUP88-208ENST00000574087 LOC400499M0QZD8 3231 aa1.41□□□□□ -2.18
NUP88-208ENST00000574087 CELSR3Q9NYQ7 3312 aa1.41□□□□□ -2.18
NUP88-208ENST00000574087 COL12A1Q99715 3063 aa1.41□□□□□ -2.18
NUP88-208ENST00000574087 APC2O95996 2303 aa1.41□□□□□ -2.18
NUP88-208ENST00000574087 DCHS2Q6V1P9 2916 aa1.4□□□□□ -2.18
NUP88-208ENST00000574087 ATMQ13315 3056 aa1.4□□□□□ -2.19
NUP88-208ENST00000574087 CDH23Q9H251 3354 aa1.4□□□□□ -2.19
NUP88-208ENST00000574087 FRAS1Q86XX4 4008 aa1.4□□□□□ -2.19
NUP88-208ENST00000574087 AKAP6Q13023 2319 aa1.39□□□□□ -2.19
NUP88-208ENST00000574087 RPS29P62273 56 aaKnown RBP1.39□□□□□ -2.19
NUP88-208ENST00000574087 ITPR1Q14643 2758 aa1.39□□□□□ -2.19
NUP88-208ENST00000574087 ACACAQ13085 2346 aa1.38□□□□□ -2.19
NUP88-208ENST00000574087 SPTBN4Q9H254 2564 aa1.38□□□□□ -2.19
NUP88-208ENST00000574087 ZNF462Q96JM2 2506 aa1.38□□□□□ -2.19
NUP88-208ENST00000574087 ROS1P08922 2347 aa1.38□□□□□ -2.19
NUP88-208ENST00000574087 TENM1Q9UKZ4 2725 aa1.37□□□□□ -2.19
NUP88-208ENST00000574087 MYO15AQ9UKN7 3530 aa1.37□□□□□ -2.19
NUP88-208ENST00000574087 VWFP04275 2813 aa1.37□□□□□ -2.19
NUP88-208ENST00000574087 ABCA2Q9BZC7 2435 aa1.37□□□□□ -2.19
NUP88-208ENST00000574087 HRNRQ86YZ3 2850 aaPredicted RBP1.37□□□□□ -2.19
NUP88-208ENST00000574087 TRRAPQ9Y4A5 3859 aa1.37□□□□□ -2.19
NUP88-208ENST00000574087 NCOR2Q9Y618 2525 aa1.36□□□□□ -2.19
NUP88-208ENST00000574087 ASPMQ8IZT6 3477 aa1.36□□□□□ -2.19
NUP88-208ENST00000574087 ANK3Q12955 4377 aaKnown RBP1.36□□□□□ -2.19
NUP88-208ENST00000574087 FCGBPQ9Y6R7 5405 aaPredicted RBP1.36□□□□□ -2.19
NUP88-208ENST00000574087 PKD1L2Q7Z442 2459 aa1.36□□□□□ -2.19
NUP88-208ENST00000574087 CRYBG3Q68DQ2 2970 aa1.35□□□□□ -2.19
NUP88-208ENST00000574087 VPS13CQ709C8 3753 aa1.35□□□□□ -2.19
NUP88-208ENST00000574087 MYCBP2O75592 4640 aa1.35□□□□□ -2.19
NUP88-208ENST00000574087 RELNP78509 3460 aa1.35□□□□□ -2.19
NUP88-208ENST00000574087 LYSTQ99698 3801 aa1.35□□□□□ -2.19
NUP88-208ENST00000574087 CACNA1AO00555 2505 aa1.35□□□□□ -2.19
NUP88-208ENST00000574087 NF1P21359 2839 aa1.34□□□□□ -2.19
NUP88-208ENST00000574087 TEX15Q9BXT5 2789 aa1.34□□□□□ -2.19
NUP88-208ENST00000574087 SPTA1P02549 2419 aa1.34□□□□□ -2.19
NUP88-208ENST00000574087 DYNC2H1Q8NCM8 4307 aaKnown RBP1.34□□□□□ -2.2
NUP88-208ENST00000574087 ANK2Q01484 3957 aa1.34□□□□□ -2.2
NUP88-208ENST00000574087 BSNQ9UPA5 3926 aa1.34□□□□□ -2.2
NUP88-208ENST00000574087 DNAH8Q96JB1 4490 aa1.33□□□□□ -2.2
NUP88-208ENST00000574087 ANKHD1Q8IWZ3 2542 aaKnown RBP1.33□□□□□ -2.2
NUP88-208ENST00000574087 SVEP1Q4LDE5 3571 aa1.33□□□□□ -2.2
NUP88-208ENST00000574087 C2CD3Q4AC94 2353 aa1.33□□□□□ -2.2
NUP88-208ENST00000574087 APCP25054 2843 aa1.32□□□□□ -2.2
NUP88-208ENST00000574087 CSPG4Q6UVK1 2322 aa1.32□□□□□ -2.2
NUP88-208ENST00000574087 DNAH9Q9NYC9 4486 aa1.32□□□□□ -2.2
NUP88-208ENST00000574087 UBR5O95071 2799 aaPredicted RBP1.32□□□□□ -2.2
NUP88-208ENST00000574087 ADGRG4Q8IZF6 3080 aa1.32□□□□□ -2.2
NUP88-208ENST00000574087 NCOR1O75376 2440 aa1.31□□□□□ -2.2
NUP88-208ENST00000574087 UTP20O75691 2785 aaKnown RBP1.31□□□□□ -2.2
NUP88-208ENST00000574087 TENM4Q6N022 2769 aa1.31□□□□□ -2.2
NUP88-208ENST00000574087 DNAH10Q8IVF4 4471 aa1.31□□□□□ -2.2
NUP88-208ENST00000574087 CMYA5Q8N3K9 4069 aa1.31□□□□□ -2.2
NUP88-208ENST00000574087 SETXQ7Z333 2677 aaKnown RBP1.31□□□□□ -2.2
NUP88-208ENST00000574087 DNAH11Q96DT5 4516 aa1.31□□□□□ -2.2
NUP88-208ENST00000574087 CACNA1HO95180 2353 aa1.31□□□□□ -2.2
NUP88-208ENST00000574087 MEGF8Q7Z7M0 2845 aa1.31□□□□□ -2.2
NUP88-208ENST00000574087 DNAH7Q8WXX0 4024 aa1.31□□□□□ -2.2
NUP88-208ENST00000574087 SRRM2Q9UQ35 2752 aaKnown RBP1.3□□□□□ -2.2
NUP88-208ENST00000574087 PDZD2O15018 2839 aa1.3□□□□□ -2.2
NUP88-208ENST00000574087 NBASA2RRP1 2371 aa1.3□□□□□ -2.2
NUP88-208ENST00000574087 CSMD3Q7Z407 3707 aa1.3□□□□□ -2.2
NUP88-208ENST00000574087 DNAH3Q8TD57 4116 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms