RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 PMAIP1Q13794 54 aa9.3□□□□□ -0.92
NUP88-207ENST00000573584 PLAC8Q9NZF1 115 aa9.29□□□□□ -0.92
NUP88-207ENST00000573584 LOC101927531A0A1B0GV80 90 aa9.28□□□□□ -0.92
NUP88-207ENST00000573584 Q75L30 129 aa9.28□□□□□ -0.92
NUP88-207ENST00000573584 SPAG11AQ6PDA7 123 aa9.26□□□□□ -0.93
NUP88-207ENST00000573584 SPINK6Q6UWN8 80 aa9.26□□□□□ -0.93
NUP88-207ENST00000573584 A6NED7 52 aa9.25□□□□□ -0.93
NUP88-207ENST00000573584 HRES1P13985 223 aa9.24□□□□□ -0.93
NUP88-207ENST00000573584 DNAH2Q9P225 4427 aa9.23□□□□□ -0.93
NUP88-207ENST00000573584 LCA10Q71F78 164 aa9.21□□□□□ -0.93
NUP88-207ENST00000573584 LINC01558Q9Y6Z2 57 aa9.21□□□□□ -0.93
NUP88-207ENST00000573584 KMT2AQ03164 3969 aa9.21□□□□□ -0.93
NUP88-207ENST00000573584 DNAH17Q9UFH2 4485 aa9.21□□□□□ -0.94
NUP88-207ENST00000573584 CIRBP-AS1Q8TBR5 109 aa9.21□□□□□ -0.94
NUP88-207ENST00000573584 Q5W150 140 aa9.2□□□□□ -0.94
NUP88-207ENST00000573584 PRKDCP78527 4128 aaKnown RBP9.2□□□□□ -0.94
NUP88-207ENST00000573584 SPTSSBQ8NFR3 76 aa9.19□□□□□ -0.94
NUP88-207ENST00000573584 IGLV7-43P04211 117 aa9.19□□□□□ -0.94
NUP88-207ENST00000573584 FBN3Q75N90 2809 aa9.16□□□□□ -0.94
NUP88-207ENST00000573584 SEC61GP60059 68 aa9.16□□□□□ -0.94
NUP88-207ENST00000573584 TGP01266 2768 aa9.16□□□□□ -0.94
NUP88-207ENST00000573584 ATP11AUNQ6ZP68 121 aa9.15□□□□□ -0.94
NUP88-207ENST00000573584 KRTAP13-3Q3SY46 172 aa9.15□□□□□ -0.94
NUP88-207ENST00000573584 MEGF8Q7Z7M0 2845 aa9.14□□□□□ -0.95
NUP88-207ENST00000573584 CDC42SE1Q9NRR8 79 aa9.13□□□□□ -0.95
NUP88-207ENST00000573584 C1orf134Q5TEV5 83 aa9.12□□□□□ -0.95
NUP88-207ENST00000573584 SSBP3-AS1Q7Z2R9 100 aa9.11□□□□□ -0.95
NUP88-207ENST00000573584 PRR26Q8N8Z3 221 aa9.1□□□□□ -0.95
NUP88-207ENST00000573584 C8orf87E5RJ46 101 aa9.1□□□□□ -0.95
NUP88-207ENST00000573584 SPINK7P58062 85 aa9.08□□□□□ -0.96
NUP88-207ENST00000573584 ALMS1Q8TCU4 4167 aa9.07□□□□□ -0.96
NUP88-207ENST00000573584 ACYP2P14621 99 aa9.07□□□□□ -0.96
NUP88-207ENST00000573584 LINC00313P59037 77 aa9.06□□□□□ -0.96
NUP88-207ENST00000573584 KTN1-AS1Q86SY8 53 aa9.04□□□□□ -0.96
NUP88-207ENST00000573584 DNAH11Q96DT5 4516 aa9.04□□□□□ -0.96
NUP88-207ENST00000573584 DNAH6Q9C0G6 4158 aa9.03□□□□□ -0.96
NUP88-207ENST00000573584 A6NN06 94 aa9.02□□□□□ -0.96
NUP88-207ENST00000573584 RETNLBQ9BQ08 111 aa9.02□□□□□ -0.96
NUP88-207ENST00000573584 FAM229AH3BQW9 127 aa9.01□□□□□ -0.97
NUP88-207ENST00000573584 LY6G6CO95867 125 aa9.01□□□□□ -0.97
NUP88-207ENST00000573584 DMAC1Q96GE9 116 aa9□□□□□ -0.97
NUP88-207ENST00000573584 KRTAP10-2P60368 255 aa8.98□□□□□ -0.97
NUP88-207ENST00000573584 KRTAP13-2Q52LG2 175 aa8.98□□□□□ -0.97
NUP88-207ENST00000573584 DNAH5Q8TE73 4624 aa8.98□□□□□ -0.97
NUP88-207ENST00000573584 IGKV2-30P06310 120 aa8.95□□□□□ -0.98
NUP88-207ENST00000573584 LRP1BQ9NZR2 4599 aa8.92□□□□□ -0.98
NUP88-207ENST00000573584 KRTAP16-1A8MUX0 517 aa8.91□□□□□ -0.98
NUP88-207ENST00000573584 A0A1B0GU69 56 aa8.87□□□□□ -0.99
NUP88-207ENST00000573584 KRTAP10-1P60331 282 aa8.87□□□□□ -0.99
NUP88-207ENST00000573584 C7orf65Q6ZTY9 151 aa8.87□□□□□ -0.99
NUP88-207ENST00000573584 Q6ZSA8 131 aa8.86□□□□□ -0.99
NUP88-207ENST00000573584 RBM12B-AS1Q9P1G2 102 aa8.86□□□□□ -0.99
NUP88-207ENST00000573584 IGKV2D-30A0A075B6S6 120 aa8.86□□□□□ -0.99
NUP88-207ENST00000573584 KRTAP1-4P0C5Y4 121 aa8.84□□□□□ -0.99
NUP88-207ENST00000573584 PKD1P98161 4303 aa8.82□□□□□ -1
NUP88-207ENST00000573584 C4orf48Q5BLP8 95 aa8.81□□□□□ -1
NUP88-207ENST00000573584 DNHD1Q96M86 4753 aa8.8□□□□□ -1
NUP88-207ENST00000573584 PLA2G1BP04054 148 aaKnown RBP8.79□□□□□ -1
NUP88-207ENST00000573584 VPS13BQ7Z7G8 4022 aa8.79□□□□□ -1
NUP88-207ENST00000573584 TYMSOSQ8TAI1 123 aa8.76□□□□□ -1.01
NUP88-207ENST00000573584 SPATA8Q6RVD6 105 aa8.75□□□□□ -1.01
NUP88-207ENST00000573584 FAT2Q9NYQ8 4349 aa8.75□□□□□ -1.01
NUP88-207ENST00000573584 HYDINQ4G0P3 5121 aa8.74□□□□□ -1.01
NUP88-207ENST00000573584 SPINK1P00995 79 aa8.74□□□□□ -1.01
NUP88-207ENST00000573584 UQCR11O14957 56 aa8.73□□□□□ -1.01
NUP88-207ENST00000573584 MIR22HGQ0VDD5 57 aa8.72□□□□□ -1.01
NUP88-207ENST00000573584 Q8N1X5 172 aa8.65□□□□□ -1.02
NUP88-207ENST00000573584 PRAC1Q96KF2 57 aa8.64□□□□□ -1.03
NUP88-207ENST00000573584 LINC00304Q8N9R0 145 aa8.63□□□□□ -1.03
NUP88-207ENST00000573584 ADM2Q7Z4H4 148 aa8.62□□□□□ -1.03
NUP88-207ENST00000573584 RPS29P62273 56 aaKnown RBP8.57□□□□□ -1.04
NUP88-207ENST00000573584 PKHD1P08F94 4074 aa8.55□□□□□ -1.04
NUP88-207ENST00000573584 C9orf92A6NGG3 77 aa8.52□□□□□ -1.05
NUP88-207ENST00000573584 SMR3BP02814 79 aaPredicted RBP8.49□□□□□ -1.05
NUP88-207ENST00000573584 SACSQ9NZJ4 4579 aa8.49□□□□□ -1.05
NUP88-207ENST00000573584 A8MUU9 505 aa8.47□□□□□ -1.05
NUP88-207ENST00000573584 C20orf166-AS1Q96NR2 134 aa8.47□□□□□ -1.05
NUP88-207ENST00000573584 KRTAP3-1Q9BYR8 98 aa8.43□□□□□ -1.06
NUP88-207ENST00000573584 DYNC1H1Q14204 4646 aaKnown RBP8.42□□□□□ -1.06
NUP88-207ENST00000573584 FAT1Q14517 4588 aa8.4□□□□□ -1.06
NUP88-207ENST00000573584 H0YAA0 97 aa8.4□□□□□ -1.06
NUP88-207ENST00000573584 LINC01554Q52M75 96 aa8.4□□□□□ -1.06
NUP88-207ENST00000573584 CSAG1Q6PB30 78 aa8.38□□□□□ -1.07
NUP88-207ENST00000573584 PKHD1L1Q86WI1 4243 aa8.36□□□□□ -1.07
NUP88-207ENST00000573584 A0A1B0GU33 70 aa8.36□□□□□ -1.07
NUP88-207ENST00000573584 APOBP04114 4563 aaKnown RBP8.34□□□□□ -1.07
NUP88-207ENST00000573584 KRTAP10-4P60372 401 aaPredicted RBP8.33□□□□□ -1.08
NUP88-207ENST00000573584 H1FX-AS1Q4G0G2 97 aa8.31□□□□□ -1.08
NUP88-207ENST00000573584 COX6B2Q6YFQ2 88 aa8.26□□□□□ -1.09
NUP88-207ENST00000573584 A0A1B0GVY2 172 aa8.26□□□□□ -1.09
NUP88-207ENST00000573584 FLG2Q5D862 2391 aaPredicted RBP8.18□□□□□ -1.1
NUP88-207ENST00000573584 FAT3Q8TDW7 4589 aa8.14□□□□□ -1.11
NUP88-207ENST00000573584 K7ERS5 55 aa8.13□□□□□ -1.11
NUP88-207ENST00000573584 KRTAP25-1Q3LHN0 102 aa8.13□□□□□ -1.11
NUP88-207ENST00000573584 LRP1Q07954 4544 aaKnown RBP8.08□□□□□ -1.12
NUP88-207ENST00000573584 KRTAP21-3Q3LHN1 58 aa8.07□□□□□ -1.12
NUP88-207ENST00000573584 RYR2Q92736 4967 aa8.06□□□□□ -1.12
NUP88-207ENST00000573584 KRTAP3-3Q9BYR6 98 aa8.06□□□□□ -1.12
NUP88-207ENST00000573584 TNXBP22105 4242 aa8.05□□□□□ -1.12
NUP88-207ENST00000573584 HSPG2P98160 4391 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms