RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 FAM236DA0A1B0GTK5 79 aa8.94□□□□□ -0.98
CHD3-214ENST00000572579 A0A1B0GVX0 72 aa8.94□□□□□ -0.98
CHD3-214ENST00000572579 FAM236CP0DP71 79 aa8.94□□□□□ -0.98
CHD3-214ENST00000572579 UQCR10Q9UDW1 63 aa8.94□□□□□ -0.98
CHD3-214ENST00000572579 RBM3P98179 157 aaKnown RBP8.92□□□□□ -0.98
CHD3-214ENST00000572579 VPS25Q9BRG1 176 aa8.92□□□□□ -0.98
CHD3-214ENST00000572579 RBM12B-AS1Q9P1G2 102 aa8.91□□□□□ -0.98
CHD3-214ENST00000572579 C8orf87E5RJ46 101 aa8.89□□□□□ -0.99
CHD3-214ENST00000572579 BAALC-AS2P0C853 105 aa8.89□□□□□ -0.99
CHD3-214ENST00000572579 SCGB1C2P0DMR2 95 aa8.89□□□□□ -0.99
CHD3-214ENST00000572579 Q6ZQT0 140 aa8.87□□□□□ -0.99
CHD3-214ENST00000572579 DSCR8Q96T75 97 aa8.87□□□□□ -0.99
CHD3-214ENST00000572579 KRTAP9-7A8MTY7 169 aa8.86□□□□□ -0.99
CHD3-214ENST00000572579 KRTAP10-10P60014 251 aa8.86□□□□□ -0.99
CHD3-214ENST00000572579 ZCCHC13Q8WW36 166 aaKnown RBP8.86□□□□□ -0.99
CHD3-214ENST00000572579 SPINK7P58062 85 aa8.85□□□□□ -0.99
CHD3-214ENST00000572579 KRTAP19-1Q8IUB9 90 aa8.84□□□□□ -0.99
CHD3-214ENST00000572579 C9JAW5 83 aa8.83□□□□□ -1
CHD3-214ENST00000572579 Q8N9P0 234 aaPredicted RBP8.83□□□□□ -1
CHD3-214ENST00000572579 NAA38Q9BRA0 125 aaKnown RBP8.81□□□□□ -1
CHD3-214ENST00000572579 J3KT08 172 aa8.8□□□□□ -1
CHD3-214ENST00000572579 IGKV3D-7A0A0C4DH55 119 aa8.77□□□□□ -1.01
CHD3-214ENST00000572579 C8orf17Q9NRJ1 99 aa8.76□□□□□ -1.01
CHD3-214ENST00000572579 MACF1Q9UPN3 7388 aaKnown RBP8.76□□□□□ -1.01
CHD3-214ENST00000572579 SYNE2Q8WXH0 6885 aaKnown RBP8.75□□□□□ -1.01
CHD3-214ENST00000572579 LOC110117498A0A087WWA1 95 aa8.74□□□□□ -1.01
CHD3-214ENST00000572579 A8MWP4 228 aa8.74□□□□□ -1.01
CHD3-214ENST00000572579 C21orf62-AS1Q17RA5 79 aa8.72□□□□□ -1.01
CHD3-214ENST00000572579 NDUFB1O75438 58 aa8.71□□□□□ -1.02
CHD3-214ENST00000572579 ATXN8Q156A1 80 aa8.71□□□□□ -1.02
CHD3-214ENST00000572579 MTURNQ8N3F0 131 aa8.7□□□□□ -1.02
CHD3-214ENST00000572579 C14orf132Q9NPU4 83 aa8.7□□□□□ -1.02
CHD3-214ENST00000572579 JMJD7-PLA2G4BH0Y9G9 81 aa8.69□□□□□ -1.02
CHD3-214ENST00000572579 WFDC13Q8IUB5 93 aa8.69□□□□□ -1.02
CHD3-214ENST00000572579 Q6ZVQ6 151 aa8.68□□□□□ -1.02
CHD3-214ENST00000572579 A0A1B0GW54 56 aa8.67□□□□□ -1.02
CHD3-214ENST00000572579 PRR15Q8IV56 129 aa8.67□□□□□ -1.02
CHD3-214ENST00000572579 M0R143 59 aa8.64□□□□□ -1.03
CHD3-214ENST00000572579 MMP24-AS1A0A0U1RRL7 71 aa8.63□□□□□ -1.03
CHD3-214ENST00000572579 PDE6GP18545 87 aa8.63□□□□□ -1.03
CHD3-214ENST00000572579 LYRM7Q5U5X0 104 aa8.63□□□□□ -1.03
CHD3-214ENST00000572579 SMIM6P0DI80 62 aa8.61□□□□□ -1.03
CHD3-214ENST00000572579 KRTAP19-6Q3LI70 58 aa8.61□□□□□ -1.03
CHD3-214ENST00000572579 NREPQ16612 68 aa8.6□□□□□ -1.03
CHD3-214ENST00000572579 MRPL34Q9BQ48 92 aaKnown RBP8.58□□□□□ -1.04
CHD3-214ENST00000572579 TMEM254Q8TBM7 123 aa8.57□□□□□ -1.04
CHD3-214ENST00000572579 K7EQZ3 153 aa8.56□□□□□ -1.04
CHD3-214ENST00000572579 Q5W150 140 aa8.54□□□□□ -1.04
CHD3-214ENST00000572579 hDV103S1A0JD37 113 aa8.52□□□□□ -1.05
CHD3-214ENST00000572579 H1FX-AS1Q4G0G2 97 aa8.52□□□□□ -1.05
CHD3-214ENST00000572579 BATFQ16520 125 aa8.49□□□□□ -1.05
CHD3-214ENST00000572579 TAX1BP3O14907 124 aa8.46□□□□□ -1.06
CHD3-214ENST00000572579 NDUFS5O43920 106 aa8.46□□□□□ -1.06
CHD3-214ENST00000572579 C9orf118A6NHY6 69 aa8.45□□□□□ -1.06
CHD3-214ENST00000572579 PCP4L1A6NKN8 68 aa8.45□□□□□ -1.06
CHD3-214ENST00000572579 IGKV2D-30A0A075B6S6 120 aa8.44□□□□□ -1.06
CHD3-214ENST00000572579 H3BT86 120 aa8.44□□□□□ -1.06
CHD3-214ENST00000572579 IGKV2-30P06310 120 aa8.44□□□□□ -1.06
CHD3-214ENST00000572579 Q8N9L7 120 aa8.44□□□□□ -1.06
CHD3-214ENST00000572579 A0A1W2PPM0 123 aa8.42□□□□□ -1.06
CHD3-214ENST00000572579 BPY2O14599 106 aa8.42□□□□□ -1.06
CHD3-214ENST00000572579 LINC00846Q9NV44 126 aa8.39□□□□□ -1.07
CHD3-214ENST00000572579 TSTD3H0UI37 97 aa8.38□□□□□ -1.07
CHD3-214ENST00000572579 C7orf65Q6ZTY9 151 aa8.37□□□□□ -1.07
CHD3-214ENST00000572579 SMCPP49901 116 aaPredicted RBP8.36□□□□□ -1.07
CHD3-214ENST00000572579 C4orf26Q17RF5 130 aa8.36□□□□□ -1.07
CHD3-214ENST00000572579 HCG22E2RYF7 251 aa8.35□□□□□ -1.07
CHD3-214ENST00000572579 CASC2Q6XLA1 102 aa8.35□□□□□ -1.07
CHD3-214ENST00000572579 KRTAP3-1Q9BYR8 98 aa8.35□□□□□ -1.07
CHD3-214ENST00000572579 KRTAP6-3Q3LI67 103 aa8.29□□□□□ -1.08
CHD3-214ENST00000572579 PRO0461Q9UI25 63 aa8.26□□□□□ -1.09
CHD3-214ENST00000572579 SPCS1Q9Y6A9 102 aa8.26□□□□□ -1.09
CHD3-214ENST00000572579 NEBP20929 6669 aa8.25□□□□□ -1.09
CHD3-214ENST00000572579 CXCL6P80162 114 aa8.25□□□□□ -1.09
CHD3-214ENST00000572579 C5orf47Q569G3 176 aa8.25□□□□□ -1.09
CHD3-214ENST00000572579 MT1BP07438 61 aa8.22□□□□□ -1.09
CHD3-214ENST00000572579 LCA10Q71F78 164 aa8.15□□□□□ -1.1
CHD3-214ENST00000572579 C1orf64Q8NEQ6 169 aa8.15□□□□□ -1.1
CHD3-214ENST00000572579 MUC12Q9UKN1 5478 aa8.14□□□□□ -1.11
CHD3-214ENST00000572579 KRTAP19-8Q3LI54 63 aa8.14□□□□□ -1.11
CHD3-214ENST00000572579 SPRR2GQ9BYE4 73 aa8.14□□□□□ -1.11
CHD3-214ENST00000572579 UBL5Q9BZL1 73 aa8.14□□□□□ -1.11
CHD3-214ENST00000572579 S4R3F8 94 aa8.14□□□□□ -1.11
CHD3-214ENST00000572579 FAM236AA0A1B0GUQ0 79 aa8.11□□□□□ -1.11
CHD3-214ENST00000572579 FAM236BA0A1B0GV22 79 aa8.11□□□□□ -1.11
CHD3-214ENST00000572579 KRTAP3-3Q9BYR6 98 aa8.11□□□□□ -1.11
CHD3-214ENST00000572579 K7EP34 96 aa8.1□□□□□ -1.11
CHD3-214ENST00000572579 CSAG1Q6PB30 78 aa8.1□□□□□ -1.11
CHD3-214ENST00000572579 A6NN06 94 aa8.08□□□□□ -1.12
CHD3-214ENST00000572579 COL5A1-AS1Q5SY13 56 aa8.07□□□□□ -1.12
CHD3-214ENST00000572579 Q5VV11 94 aa8.07□□□□□ -1.12
CHD3-214ENST00000572579 A0A087WVE0 104 aa8.05□□□□□ -1.12
CHD3-214ENST00000572579 A0A1B0GV90 55 aa8.04□□□□□ -1.12
CHD3-214ENST00000572579 KRTAP10-5P60370 271 aa8.02□□□□□ -1.13
CHD3-214ENST00000572579 TP53AIP1Q9HCN2 124 aa8.02□□□□□ -1.13
CHD3-214ENST00000572579 KLKP1Q107X0 134 aa8□□□□□ -1.13
CHD3-214ENST00000572579 CYP4F30PQ9H0H9 118 aa8□□□□□ -1.13
CHD3-214ENST00000572579 ETDBQ3ZM63 59 aa7.95□□□□□ -1.14
CHD3-214ENST00000572579 KMT2DO14686 5537 aa7.92□□□□□ -1.14
CHD3-214ENST00000572579 MDN1Q9NU22 5596 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms