RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 TRACP01848 142 aa5.63□□□□□ -1.51
CCDC40-208ENST00000572270 SMCPP49901 116 aaPredicted RBP5.61□□□□□ -1.51
CCDC40-208ENST00000572270 CCKP06307 115 aa5.59□□□□□ -1.51
CCDC40-208ENST00000572270 A0A1B0GV72 72 aa5.58□□□□□ -1.52
CCDC40-208ENST00000572270 KLKP1Q107X0 134 aa5.58□□□□□ -1.52
CCDC40-208ENST00000572270 H0YGX0 51 aa5.57□□□□□ -1.52
CCDC40-208ENST00000572270 PRO2289Q9P1D8 64 aa5.57□□□□□ -1.52
CCDC40-208ENST00000572270 J3KT08 172 aa5.56□□□□□ -1.52
CCDC40-208ENST00000572270 NDUFB1O75438 58 aa5.56□□□□□ -1.52
CCDC40-208ENST00000572270 KRTDAPP60985 99 aa5.53□□□□□ -1.52
CCDC40-208ENST00000572270 CSAG1Q6PB30 78 aa5.53□□□□□ -1.52
CCDC40-208ENST00000572270 ATOH7Q8N100 152 aa5.53□□□□□ -1.52
CCDC40-208ENST00000572270 C8orf17Q9NRJ1 99 aa5.53□□□□□ -1.52
CCDC40-208ENST00000572270 DSTQ03001 7570 aaKnown RBP5.52□□□□□ -1.53
CCDC40-208ENST00000572270 IGKV2D-30A0A075B6S6 120 aa5.51□□□□□ -1.53
CCDC40-208ENST00000572270 A0A1B0GX51 115 aa5.51□□□□□ -1.53
CCDC40-208ENST00000572270 IGKV2-30P06310 120 aa5.51□□□□□ -1.53
CCDC40-208ENST00000572270 PRR15Q8IV56 129 aa5.51□□□□□ -1.53
CCDC40-208ENST00000572270 VPS25Q9BRG1 176 aa5.51□□□□□ -1.53
CCDC40-208ENST00000572270 KRTAP4-9Q9BYQ8 210 aa5.51□□□□□ -1.53
CCDC40-208ENST00000572270 C2orf91Q6ZV80 131 aa5.5□□□□□ -1.53
CCDC40-208ENST00000572270 Q6ZVQ6 151 aa5.5□□□□□ -1.53
CCDC40-208ENST00000572270 S4R3F8 94 aa5.5□□□□□ -1.53
CCDC40-208ENST00000572270 C7orf65Q6ZTY9 151 aa5.49□□□□□ -1.53
CCDC40-208ENST00000572270 C4orf26Q17RF5 130 aa5.47□□□□□ -1.53
CCDC40-208ENST00000572270 LCA10Q71F78 164 aa5.47□□□□□ -1.53
CCDC40-208ENST00000572270 CRIPTQ9P021 101 aa5.47□□□□□ -1.53
CCDC40-208ENST00000572270 KRTAP12-2P59991 146 aa5.45□□□□□ -1.54
CCDC40-208ENST00000572270 HIST1H4GQ99525 98 aa5.45□□□□□ -1.54
CCDC40-208ENST00000572270 H3BQ85 93 aa5.44□□□□□ -1.54
CCDC40-208ENST00000572270 DNAL4O96015 105 aa5.44□□□□□ -1.54
CCDC40-208ENST00000572270 SNRPEP62304 92 aaKnown RBP5.44□□□□□ -1.54
CCDC40-208ENST00000572270 ORMDL1Q9P0S3 153 aa5.44□□□□□ -1.54
CCDC40-208ENST00000572270 MT1XP80297 61 aa5.43□□□□□ -1.54
CCDC40-208ENST00000572270 KRTAP4-8A0A0G2JLE6 195 aa5.42□□□□□ -1.54
CCDC40-208ENST00000572270 NDUFS5O43920 106 aa5.42□□□□□ -1.54
CCDC40-208ENST00000572270 HIST1H2BKO60814 126 aa5.42□□□□□ -1.54
CCDC40-208ENST00000572270 HIST1H2BJP06899 126 aa5.42□□□□□ -1.54
CCDC40-208ENST00000572270 HIST1H2BOP23527 126 aa5.42□□□□□ -1.54
CCDC40-208ENST00000572270 HIST1H2BBP33778 126 aa5.42□□□□□ -1.54
CCDC40-208ENST00000572270 HIST1H2BDP58876 126 aa5.42□□□□□ -1.54
CCDC40-208ENST00000572270 HIST1H2BCP62807 126 aa5.42□□□□□ -1.54
CCDC40-208ENST00000572270 HIST2H2BEQ16778 126 aa5.42□□□□□ -1.54
CCDC40-208ENST00000572270 C21orf62-AS1Q17RA5 79 aa5.42□□□□□ -1.54
CCDC40-208ENST00000572270 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.42□□□□□ -1.54
CCDC40-208ENST00000572270 HIST1H2BHQ93079 126 aa5.42□□□□□ -1.54
CCDC40-208ENST00000572270 HIST1H2BNQ99877 126 aa5.42□□□□□ -1.54
CCDC40-208ENST00000572270 HIST1H2BMQ99879 126 aa5.42□□□□□ -1.54
CCDC40-208ENST00000572270 KRTAP4-8Q9BYQ9 185 aa5.42□□□□□ -1.54
CCDC40-208ENST00000572270 TMEM256-PLSCR3K7ERE1 68 aa5.41□□□□□ -1.54
CCDC40-208ENST00000572270 MRPL34Q9BQ48 92 aaKnown RBP5.41□□□□□ -1.54
CCDC40-208ENST00000572270 RBM3P98179 157 aaKnown RBP5.4□□□□□ -1.54
CCDC40-208ENST00000572270 TMEM254Q8TBM7 123 aa5.39□□□□□ -1.55
CCDC40-208ENST00000572270 S100A1P23297 94 aa5.37□□□□□ -1.55
CCDC40-208ENST00000572270 A0A0B4J2C4 111 aa5.36□□□□□ -1.55
CCDC40-208ENST00000572270 HSBP1L1C9JCN9 74 aa5.36□□□□□ -1.55
CCDC40-208ENST00000572270 Q6ZQT0 140 aa5.35□□□□□ -1.55
CCDC40-208ENST00000572270 UBE2V1Q13404 147 aa5.34□□□□□ -1.55
CCDC40-208ENST00000572270 MMP24-AS1A0A0U1RRL7 71 aa5.33□□□□□ -1.56
CCDC40-208ENST00000572270 K7EQZ3 153 aa5.32□□□□□ -1.56
CCDC40-208ENST00000572270 COA6Q5JTJ3 125 aaKnown RBP5.32□□□□□ -1.56
CCDC40-208ENST00000572270 hDV103S1A0JD37 113 aa5.31□□□□□ -1.56
CCDC40-208ENST00000572270 TRIAP1O43715 76 aa5.31□□□□□ -1.56
CCDC40-208ENST00000572270 LCE1DQ5T752 114 aa5.31□□□□□ -1.56
CCDC40-208ENST00000572270 Q5W150 140 aa5.31□□□□□ -1.56
CCDC40-208ENST00000572270 PLAC4Q8WY50 150 aa5.31□□□□□ -1.56
CCDC40-208ENST00000572270 KRTAP3-1Q9BYR8 98 aa5.3□□□□□ -1.56
CCDC40-208ENST00000572270 TMEM238LA0A1B0GVL6 79 aa5.28□□□□□ -1.56
CCDC40-208ENST00000572270 A6NJY4 79 aa5.28□□□□□ -1.56
CCDC40-208ENST00000572270 C9JAW5 83 aa5.28□□□□□ -1.56
CCDC40-208ENST00000572270 C1orf64Q8NEQ6 169 aa5.28□□□□□ -1.56
CCDC40-208ENST00000572270 PRO1854Q9UHT4 67 aa5.27□□□□□ -1.57
CCDC40-208ENST00000572270 A8MUN3 132 aa5.26□□□□□ -1.57
CCDC40-208ENST00000572270 KRTAP5-10Q6L8G5 202 aa5.26□□□□□ -1.57
CCDC40-208ENST00000572270 HIST3H2BBQ8N257 126 aa5.26□□□□□ -1.57
CCDC40-208ENST00000572270 HIST1H2BLQ99880 126 aa5.24□□□□□ -1.57
CCDC40-208ENST00000572270 S100A2P29034 98 aa5.23□□□□□ -1.57
CCDC40-208ENST00000572270 S100A6P06703 90 aa5.22□□□□□ -1.57
CCDC40-208ENST00000572270 PDE6GP18545 87 aa5.22□□□□□ -1.57
CCDC40-208ENST00000572270 PSMB2P49721 201 aa5.21□□□□□ -1.58
CCDC40-208ENST00000572270 HMCN1Q96RW7 5635 aa5.21□□□□□ -1.58
CCDC40-208ENST00000572270 AHNAK2Q8IVF2 5795 aa5.2□□□□□ -1.58
CCDC40-208ENST00000572270 COX8AP10176 69 aa5.2□□□□□ -1.58
CCDC40-208ENST00000572270 A0A1B0GW54 56 aa5.19□□□□□ -1.58
CCDC40-208ENST00000572270 COX6CP09669 75 aa5.19□□□□□ -1.58
CCDC40-208ENST00000572270 KRTAP10-7P60409 375 aaPredicted RBP5.18□□□□□ -1.58
CCDC40-208ENST00000572270 MT4P47944 62 aa5.17□□□□□ -1.58
CCDC40-208ENST00000572270 CEND1Q8N111 149 aa5.17□□□□□ -1.58
CCDC40-208ENST00000572270 HCG22E2RYF7 251 aa5.16□□□□□ -1.58
CCDC40-208ENST00000572270 DLEU1O43261 78 aa5.16□□□□□ -1.58
CCDC40-208ENST00000572270 NREPQ16612 68 aa5.16□□□□□ -1.58
CCDC40-208ENST00000572270 KRTAP5-7Q6L8G8 165 aa5.16□□□□□ -1.58
CCDC40-208ENST00000572270 KRTAP10-12P60413 245 aa5.15□□□□□ -1.59
CCDC40-208ENST00000572270 HIGD1BQ9P298 99 aa5.14□□□□□ -1.59
CCDC40-208ENST00000572270 CXCL6P80162 114 aa5.13□□□□□ -1.59
CCDC40-208ENST00000572270 LCE4AQ5TA78 99 aa5.12□□□□□ -1.59
CCDC40-208ENST00000572270 TMA7Q9Y2S6 64 aaKnown RBP5.12□□□□□ -1.59
CCDC40-208ENST00000572270 H0YAA0 97 aa5.11□□□□□ -1.59
CCDC40-208ENST00000572270 PAM16Q9Y3D7 125 aa5.1□□□□□ -1.59
CCDC40-208ENST00000572270 SPRR5A0A1B0GTR4 108 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms