RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 C8orf87E5RJ46 101 aa9.33□□□□□ -0.92
CLN3-237ENST00000569030 JMJD7-PLA2G4BH0Y9G9 81 aa9.33□□□□□ -0.92
CLN3-237ENST00000569030 LOC110117498A0A087WWA1 95 aa9.32□□□□□ -0.92
CLN3-237ENST00000569030 C21orf62-AS1Q17RA5 79 aa9.32□□□□□ -0.92
CLN3-237ENST00000569030 TSTD3H0UI37 97 aa9.31□□□□□ -0.92
CLN3-237ENST00000569030 BATFQ16520 125 aa9.31□□□□□ -0.92
CLN3-237ENST00000569030 J3KT08 172 aa9.3□□□□□ -0.92
CLN3-237ENST00000569030 CRCT1Q9UGL9 99 aa9.3□□□□□ -0.92
CLN3-237ENST00000569030 LOC105371267A0A1B0GV96 52 aa9.29□□□□□ -0.92
CLN3-237ENST00000569030 C14orf132Q9NPU4 83 aa9.29□□□□□ -0.92
CLN3-237ENST00000569030 LYRM7Q5U5X0 104 aa9.27□□□□□ -0.93
CLN3-237ENST00000569030 HRES1P13985 223 aa9.26□□□□□ -0.93
CLN3-237ENST00000569030 A0A1B0GW54 56 aa9.25□□□□□ -0.93
CLN3-237ENST00000569030 PDE6GP18545 87 aa9.25□□□□□ -0.93
CLN3-237ENST00000569030 MPLKIPQ8TAP9 179 aa9.25□□□□□ -0.93
CLN3-237ENST00000569030 NDUFB1O75438 58 aa9.23□□□□□ -0.93
CLN3-237ENST00000569030 C9orf118A6NHY6 69 aa9.22□□□□□ -0.93
CLN3-237ENST00000569030 A8MWP4 228 aa9.22□□□□□ -0.93
CLN3-237ENST00000569030 IGKV3D-7A0A0C4DH55 119 aa9.21□□□□□ -0.94
CLN3-237ENST00000569030 TAX1BP3O14907 124 aa9.21□□□□□ -0.94
CLN3-237ENST00000569030 ZCCHC13Q8WW36 166 aaKnown RBP9.21□□□□□ -0.94
CLN3-237ENST00000569030 FAM236DA0A1B0GTK5 79 aa9.2□□□□□ -0.94
CLN3-237ENST00000569030 FAM236CP0DP71 79 aa9.2□□□□□ -0.94
CLN3-237ENST00000569030 Q8N9P0 234 aaPredicted RBP9.2□□□□□ -0.94
CLN3-237ENST00000569030 KRTAP9-8Q9BYQ0 159 aa9.2□□□□□ -0.94
CLN3-237ENST00000569030 C8orf17Q9NRJ1 99 aa9.19□□□□□ -0.94
CLN3-237ENST00000569030 RBM12B-AS1Q9P1G2 102 aa9.19□□□□□ -0.94
CLN3-237ENST00000569030 A0A1W2PPM0 123 aa9.17□□□□□ -0.94
CLN3-237ENST00000569030 MTURNQ8N3F0 131 aa9.17□□□□□ -0.94
CLN3-237ENST00000569030 NREPQ16612 68 aa9.16□□□□□ -0.94
CLN3-237ENST00000569030 H3BT86 120 aa9.14□□□□□ -0.95
CLN3-237ENST00000569030 SPINK7P58062 85 aa9.14□□□□□ -0.95
CLN3-237ENST00000569030 PRR15Q8IV56 129 aa9.14□□□□□ -0.95
CLN3-237ENST00000569030 Q6ZVQ6 151 aa9.11□□□□□ -0.95
CLN3-237ENST00000569030 MMP24-AS1A0A0U1RRL7 71 aa9.07□□□□□ -0.96
CLN3-237ENST00000569030 MT2AP02795 61 aa9.06□□□□□ -0.96
CLN3-237ENST00000569030 K7EQZ3 153 aa9.05□□□□□ -0.96
CLN3-237ENST00000569030 TMEM254Q8TBM7 123 aa9.04□□□□□ -0.96
CLN3-237ENST00000569030 MRPL34Q9BQ48 92 aaKnown RBP9.04□□□□□ -0.96
CLN3-237ENST00000569030 SPCS1Q9Y6A9 102 aa9.03□□□□□ -0.96
CLN3-237ENST00000569030 SMCPP49901 116 aaPredicted RBP9.02□□□□□ -0.97
CLN3-237ENST00000569030 hDV103S1A0JD37 113 aa9□□□□□ -0.97
CLN3-237ENST00000569030 WFDC13Q8IUB5 93 aa9□□□□□ -0.97
CLN3-237ENST00000569030 BPY2O14599 106 aa8.99□□□□□ -0.97
CLN3-237ENST00000569030 MT1FP04733 61 aa8.99□□□□□ -0.97
CLN3-237ENST00000569030 NDUFS5O43920 106 aa8.95□□□□□ -0.98
CLN3-237ENST00000569030 COL5A1-AS1Q5SY13 56 aa8.94□□□□□ -0.98
CLN3-237ENST00000569030 Q8N9L7 120 aa8.94□□□□□ -0.98
CLN3-237ENST00000569030 KRTAP10-10P60014 251 aa8.93□□□□□ -0.98
CLN3-237ENST00000569030 PRO0461Q9UI25 63 aa8.93□□□□□ -0.98
CLN3-237ENST00000569030 USH2AO75445 5202 aa8.93□□□□□ -0.98
CLN3-237ENST00000569030 Q5W150 140 aa8.9□□□□□ -0.98
CLN3-237ENST00000569030 KRTAP9-3Q9BYQ3 159 aa8.9□□□□□ -0.98
CLN3-237ENST00000569030 K7EP34 96 aa8.88□□□□□ -0.99
CLN3-237ENST00000569030 LCE2BO14633 110 aa8.87□□□□□ -0.99
CLN3-237ENST00000569030 CASC2Q6XLA1 102 aa8.87□□□□□ -0.99
CLN3-237ENST00000569030 LINC00846Q9NV44 126 aa8.87□□□□□ -0.99
CLN3-237ENST00000569030 SSPOA2VEC9 5147 aa8.86□□□□□ -0.99
CLN3-237ENST00000569030 IGKV2D-30A0A075B6S6 120 aa8.84□□□□□ -0.99
CLN3-237ENST00000569030 IGKV2-30P06310 120 aa8.84□□□□□ -0.99
CLN3-237ENST00000569030 HCG22E2RYF7 251 aa8.83□□□□□ -1
CLN3-237ENST00000569030 H1FX-AS1Q4G0G2 97 aa8.81□□□□□ -1
CLN3-237ENST00000569030 UBL5Q9BZL1 73 aa8.81□□□□□ -1
CLN3-237ENST00000569030 C7orf65Q6ZTY9 151 aa8.79□□□□□ -1
CLN3-237ENST00000569030 PCP4L1A6NKN8 68 aa8.75□□□□□ -1.01
CLN3-237ENST00000569030 CXCL6P80162 114 aa8.75□□□□□ -1.01
CLN3-237ENST00000569030 GTF2H5Q6ZYL4 71 aa8.75□□□□□ -1.01
CLN3-237ENST00000569030 F8W1H4 67 aa8.71□□□□□ -1.02
CLN3-237ENST00000569030 C4orf26Q17RF5 130 aa8.71□□□□□ -1.02
CLN3-237ENST00000569030 KRTAP19-1Q8IUB9 90 aa8.71□□□□□ -1.02
CLN3-237ENST00000569030 ETDBQ3ZM63 59 aa8.7□□□□□ -1.02
CLN3-237ENST00000569030 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.67□□□□□ -1.02
CLN3-237ENST00000569030 FCGBPQ9Y6R7 5405 aaPredicted RBP8.66□□□□□ -1.02
CLN3-237ENST00000569030 KRTAP3-1Q9BYR8 98 aa8.62□□□□□ -1.03
CLN3-237ENST00000569030 TP53AIP1Q9HCN2 124 aa8.57□□□□□ -1.04
CLN3-237ENST00000569030 KRTAP9-7A8MTY7 169 aa8.55□□□□□ -1.04
CLN3-237ENST00000569030 KRTAP19-6Q3LI70 58 aa8.53□□□□□ -1.04
CLN3-237ENST00000569030 C1orf64Q8NEQ6 169 aa8.53□□□□□ -1.04
CLN3-237ENST00000569030 C5orf47Q569G3 176 aa8.52□□□□□ -1.05
CLN3-237ENST00000569030 S4R3F8 94 aa8.48□□□□□ -1.05
CLN3-237ENST00000569030 ACYP1P07311 99 aa8.47□□□□□ -1.05
CLN3-237ENST00000569030 LCA10Q71F78 164 aa8.45□□□□□ -1.06
CLN3-237ENST00000569030 CYP4F30PQ9H0H9 118 aa8.45□□□□□ -1.06
CLN3-237ENST00000569030 MACF1Q9UPN3 7388 aaKnown RBP8.44□□□□□ -1.06
CLN3-237ENST00000569030 FAM240AA0A1B0GVK7 77 aa8.42□□□□□ -1.06
CLN3-237ENST00000569030 CSAG1Q6PB30 78 aa8.42□□□□□ -1.06
CLN3-237ENST00000569030 TRAV22A0A0B4J277 110 aa8.39□□□□□ -1.07
CLN3-237ENST00000569030 FAM236AA0A1B0GUQ0 79 aa8.38□□□□□ -1.07
CLN3-237ENST00000569030 FAM236BA0A1B0GV22 79 aa8.38□□□□□ -1.07
CLN3-237ENST00000569030 HIST1H4AP62805 103 aaKnown RBP8.38□□□□□ -1.07
CLN3-237ENST00000569030 SYNE2Q8WXH0 6885 aaKnown RBP8.38□□□□□ -1.07
CLN3-237ENST00000569030 ATP5EP2Q5VTU8 51 aa8.37□□□□□ -1.07
CLN3-237ENST00000569030 KRTAP3-3Q9BYR6 98 aa8.37□□□□□ -1.07
CLN3-237ENST00000569030 LOC101927531A0A1B0GV80 90 aa8.35□□□□□ -1.07
CLN3-237ENST00000569030 A0A087WVE0 104 aa8.34□□□□□ -1.07
CLN3-237ENST00000569030 UQCRQO14949 82 aa8.31□□□□□ -1.08
CLN3-237ENST00000569030 H0Y9P7 68 aa8.28□□□□□ -1.08
CLN3-237ENST00000569030 LINC00643Q86TS7 51 aa8.28□□□□□ -1.08
CLN3-237ENST00000569030 A0A1B0GV90 55 aa8.27□□□□□ -1.09
CLN3-237ENST00000569030 SPRR2GQ9BYE4 73 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 303.9 ms