RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 SMIM20Q8N5G0 67 aa10.84□□□□□ -0.67
CLN3-233ENST00000568452 IGHV6-1A0A0B4J1U7 121 aa10.82□□□□□ -0.68
CLN3-233ENST00000568452 CASC2Q6XLA1 102 aa10.81□□□□□ -0.68
CLN3-233ENST00000568452 WFDC13Q8IUB5 93 aa10.8□□□□□ -0.68
CLN3-233ENST00000568452 C8orf17Q9NRJ1 99 aa10.8□□□□□ -0.68
CLN3-233ENST00000568452 MMP24-AS1A0A0U1RRL7 71 aa10.8□□□□□ -0.68
CLN3-233ENST00000568452 CCDC179H3BU77 68 aa10.79□□□□□ -0.68
CLN3-233ENST00000568452 KRTAP29-1A8MX34 341 aaPredicted RBP10.78□□□□□ -0.68
CLN3-233ENST00000568452 SERP2Q8N6R1 65 aa10.78□□□□□ -0.68
CLN3-233ENST00000568452 C8orf87E5RJ46 101 aa10.77□□□□□ -0.68
CLN3-233ENST00000568452 TRAV7A0A075B6U4 112 aa10.76□□□□□ -0.69
CLN3-233ENST00000568452 hDV103S1A0JD37 113 aa10.76□□□□□ -0.69
CLN3-233ENST00000568452 UQCRQO14949 82 aa10.76□□□□□ -0.69
CLN3-233ENST00000568452 OXTP01178 125 aa10.74□□□□□ -0.69
CLN3-233ENST00000568452 COX7CP15954 63 aa10.74□□□□□ -0.69
CLN3-233ENST00000568452 OCR1Q9BZK8 76 aa10.73□□□□□ -0.69
CLN3-233ENST00000568452 TMEM254Q8TBM7 123 aa10.71□□□□□ -0.69
CLN3-233ENST00000568452 FAT3Q8TDW7 4589 aa10.71□□□□□ -0.7
CLN3-233ENST00000568452 LINC00313P59037 77 aa10.7□□□□□ -0.7
CLN3-233ENST00000568452 TNXBP22105 4242 aa10.7□□□□□ -0.7
CLN3-233ENST00000568452 ABCA13Q86UQ4 5058 aa10.69□□□□□ -0.7
CLN3-233ENST00000568452 NOTCH2NLQ7Z3S9 236 aa10.69□□□□□ -0.7
CLN3-233ENST00000568452 MRPL34Q9BQ48 92 aaKnown RBP10.69□□□□□ -0.7
CLN3-233ENST00000568452 MT1HL1P0DM35 61 aa10.68□□□□□ -0.7
CLN3-233ENST00000568452 FLG2Q5D862 2391 aaPredicted RBP10.68□□□□□ -0.7
CLN3-233ENST00000568452 LRP1Q07954 4544 aaKnown RBP10.68□□□□□ -0.7
CLN3-233ENST00000568452 J3QL48 77 aa10.66□□□□□ -0.7
CLN3-233ENST00000568452 TP53AIP1Q9HCN2 124 aa10.62□□□□□ -0.71
CLN3-233ENST00000568452 RETNLBQ9BQ08 111 aa10.61□□□□□ -0.71
CLN3-233ENST00000568452 NDUFS5O43920 106 aa10.59□□□□□ -0.71
CLN3-233ENST00000568452 MYCBP2O75592 4640 aa10.58□□□□□ -0.72
CLN3-233ENST00000568452 C5orf47Q569G3 176 aa10.58□□□□□ -0.72
CLN3-233ENST00000568452 FP248Q71RG6 208 aaPredicted RBP10.58□□□□□ -0.72
CLN3-233ENST00000568452 C20orf197Q8N268 126 aa10.56□□□□□ -0.72
CLN3-233ENST00000568452 KRTAP16-1A8MUX0 517 aa10.55□□□□□ -0.72
CLN3-233ENST00000568452 PCLOQ9Y6V0 5065 aa10.54□□□□□ -0.72
CLN3-233ENST00000568452 Q8N9P0 234 aaPredicted RBP10.54□□□□□ -0.72
CLN3-233ENST00000568452 MP68P56378 58 aa10.52□□□□□ -0.73
CLN3-233ENST00000568452 SVIPQ8NHG7 77 aa10.52□□□□□ -0.73
CLN3-233ENST00000568452 TMEM258P61165 79 aa10.51□□□□□ -0.73
CLN3-233ENST00000568452 TRAV22A0A0B4J277 110 aa10.5□□□□□ -0.73
CLN3-233ENST00000568452 KLKP1Q107X0 134 aa10.5□□□□□ -0.73
CLN3-233ENST00000568452 H0Y9P7 68 aa10.49□□□□□ -0.73
CLN3-233ENST00000568452 DMBT1Q9UGM3 2413 aaPredicted RBP10.48□□□□□ -0.73
CLN3-233ENST00000568452 A0A0U1RQV1 116 aa10.47□□□□□ -0.73
CLN3-233ENST00000568452 H3BPC8 53 aa10.47□□□□□ -0.73
CLN3-233ENST00000568452 C9orf92A6NGG3 77 aa10.47□□□□□ -0.73
CLN3-233ENST00000568452 SNURFQ9Y675 71 aa10.47□□□□□ -0.73
CLN3-233ENST00000568452 RPS28P62857 69 aaKnown RBP10.46□□□□□ -0.74
CLN3-233ENST00000568452 IGLV7-46A0A075B6I9 117 aa10.45□□□□□ -0.74
CLN3-233ENST00000568452 NDUFC1O43677 76 aa10.42□□□□□ -0.74
CLN3-233ENST00000568452 LINC00208Q96KT6 92 aa10.42□□□□□ -0.74
CLN3-233ENST00000568452 ZCCHC13Q8WW36 166 aaKnown RBP10.4□□□□□ -0.75
CLN3-233ENST00000568452 C20orf166-AS1Q96NR2 134 aa10.39□□□□□ -0.75
CLN3-233ENST00000568452 CYSTM1Q9H1C7 97 aa10.39□□□□□ -0.75
CLN3-233ENST00000568452 A8MUU9 505 aa10.38□□□□□ -0.75
CLN3-233ENST00000568452 PRR4Q16378 134 aa10.38□□□□□ -0.75
CLN3-233ENST00000568452 C1orf64Q8NEQ6 169 aa10.38□□□□□ -0.75
CLN3-233ENST00000568452 Q5W150 140 aa10.37□□□□□ -0.75
CLN3-233ENST00000568452 KRTAP13-3Q3SY46 172 aa10.36□□□□□ -0.75
CLN3-233ENST00000568452 H7BZZ5 65 aa10.33□□□□□ -0.76
CLN3-233ENST00000568452 LOC101927531A0A1B0GV80 90 aa10.33□□□□□ -0.76
CLN3-233ENST00000568452 Q75L30 129 aa10.33□□□□□ -0.76
CLN3-233ENST00000568452 TPRXLQ17RH7 258 aa10.27□□□□□ -0.77
CLN3-233ENST00000568452 XP32Q5T750 250 aa10.25□□□□□ -0.77
CLN3-233ENST00000568452 IGKV2-30P06310 120 aa10.23□□□□□ -0.77
CLN3-233ENST00000568452 ATP5EP56381 51 aaPredicted RBP10.23□□□□□ -0.77
CLN3-233ENST00000568452 CYP4F30PQ9H0H9 118 aa10.22□□□□□ -0.77
CLN3-233ENST00000568452 FAM236DA0A1B0GTK5 79 aa10.22□□□□□ -0.77
CLN3-233ENST00000568452 FAM236CP0DP71 79 aa10.22□□□□□ -0.77
CLN3-233ENST00000568452 RPL37P61927 97 aaKnown RBP10.22□□□□□ -0.77
CLN3-233ENST00000568452 ATP11AUNQ6ZP68 121 aa10.18□□□□□ -0.78
CLN3-233ENST00000568452 PCOTHQ58A44 107 aa10.18□□□□□ -0.78
CLN3-233ENST00000568452 IGKV2D-30A0A075B6S6 120 aa10.16□□□□□ -0.78
CLN3-233ENST00000568452 SERP1Q9Y6X1 66 aa10.16□□□□□ -0.78
CLN3-233ENST00000568452 SPANXA2-OT1Q8N9U9 137 aa10.15□□□□□ -0.78
CLN3-233ENST00000568452 C7orf65Q6ZTY9 151 aa10.15□□□□□ -0.79
CLN3-233ENST00000568452 HERC1Q15751 4861 aa10.14□□□□□ -0.79
CLN3-233ENST00000568452 HRES1P13985 223 aa10.04□□□□□ -0.8
CLN3-233ENST00000568452 SPINK7P58062 85 aa10.04□□□□□ -0.8
CLN3-233ENST00000568452 SMIM26A0A096LP01 95 aa9.99□□□□□ -0.81
CLN3-233ENST00000568452 HMCN2Q8NDA2 5059 aa9.94□□□□□ -0.82
CLN3-233ENST00000568452 SEC61BP60468 96 aaKnown RBP9.94□□□□□ -0.82
CLN3-233ENST00000568452 LPAP08519 4548 aa9.92□□□□□ -0.82
CLN3-233ENST00000568452 DMAC1Q96GE9 116 aa9.91□□□□□ -0.82
CLN3-233ENST00000568452 ACYP2P14621 99 aa9.88□□□□□ -0.83
CLN3-233ENST00000568452 C4orf26Q17RF5 130 aa9.88□□□□□ -0.83
CLN3-233ENST00000568452 LRP2P98164 4655 aa9.86□□□□□ -0.83
CLN3-233ENST00000568452 A8MUN3 132 aa9.85□□□□□ -0.83
CLN3-233ENST00000568452 COA5Q86WW8 74 aa9.82□□□□□ -0.84
CLN3-233ENST00000568452 COX6B2Q6YFQ2 88 aa9.81□□□□□ -0.84
CLN3-233ENST00000568452 MUC17Q685J3 4493 aa9.74□□□□□ -0.85
CLN3-233ENST00000568452 CHKB-CPT1BH3BT56 60 aa9.72□□□□□ -0.85
CLN3-233ENST00000568452 KRTAP3-1Q9BYR8 98 aa9.72□□□□□ -0.85
CLN3-233ENST00000568452 RBM12B-AS1Q9P1G2 102 aa9.69□□□□□ -0.86
CLN3-233ENST00000568452 PRO0628Q9UI54 55 aa9.69□□□□□ -0.86
CLN3-233ENST00000568452 MPLKIPQ8TAP9 179 aa9.68□□□□□ -0.86
CLN3-233ENST00000568452 Q1T7F1 81 aa9.64□□□□□ -0.87
CLN3-233ENST00000568452 V9GYY9 64 aa9.63□□□□□ -0.87
CLN3-233ENST00000568452 KRTAP4-1Q9BYQ7 146 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms