RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 EYSQ5T1H1 3165 aa5.71□□□□□ -1.5
GTF3C1-202ENST00000561623 MYO15AQ9UKN7 3530 aa5.71□□□□□ -1.5
GTF3C1-202ENST00000561623 ZNF292O60281 2723 aa5.69□□□□□ -1.5
GTF3C1-202ENST00000561623 Q6ZRN7 208 aaPredicted RBP5.69□□□□□ -1.5
GTF3C1-202ENST00000561623 FLNCQ14315 2725 aa5.69□□□□□ -1.5
GTF3C1-202ENST00000561623 ASPMQ8IZT6 3477 aa5.68□□□□□ -1.5
GTF3C1-202ENST00000561623 A0A1B0GVY2 172 aa5.66□□□□□ -1.5
GTF3C1-202ENST00000561623 ITPR1Q14643 2758 aa5.66□□□□□ -1.5
GTF3C1-202ENST00000561623 ASH1LQ9NR48 2969 aaKnown RBP5.65□□□□□ -1.51
GTF3C1-202ENST00000561623 UBR5O95071 2799 aaPredicted RBP5.64□□□□□ -1.51
GTF3C1-202ENST00000561623 LRBAP50851 2863 aa5.64□□□□□ -1.51
GTF3C1-202ENST00000561623 DMXL2Q8TDJ6 3036 aa5.62□□□□□ -1.51
GTF3C1-202ENST00000561623 BOD1L1Q8NFC6 3051 aa5.62□□□□□ -1.51
GTF3C1-202ENST00000561623 RPS29P62273 56 aaKnown RBP5.6□□□□□ -1.51
GTF3C1-202ENST00000561623 P0C880 135 aa5.6□□□□□ -1.51
GTF3C1-202ENST00000561623 ITPR2Q14571 2701 aa5.6□□□□□ -1.51
GTF3C1-202ENST00000561623 APCP25054 2843 aa5.59□□□□□ -1.51
GTF3C1-202ENST00000561623 ADGRG4Q8IZF6 3080 aa5.59□□□□□ -1.51
GTF3C1-202ENST00000561623 FRYLO94915 3013 aa5.59□□□□□ -1.52
GTF3C1-202ENST00000561623 NSD1Q96L73 2696 aaPredicted RBP5.58□□□□□ -1.52
GTF3C1-202ENST00000561623 WDFY3Q8IZQ1 3526 aa5.57□□□□□ -1.52
GTF3C1-202ENST00000561623 KRTAP10-10P60014 251 aa5.57□□□□□ -1.52
GTF3C1-202ENST00000561623 ATMQ13315 3056 aa5.57□□□□□ -1.52
GTF3C1-202ENST00000561623 TACC2O95359 2948 aa5.56□□□□□ -1.52
GTF3C1-202ENST00000561623 H0YAA0 97 aa5.55□□□□□ -1.52
GTF3C1-202ENST00000561623 TENM4Q6N022 2769 aa5.53□□□□□ -1.52
GTF3C1-202ENST00000561623 KRTAP10-8P60410 259 aa5.53□□□□□ -1.52
GTF3C1-202ENST00000561623 HIVEP1P15822 2718 aa5.53□□□□□ -1.52
GTF3C1-202ENST00000561623 UTP20O75691 2785 aaKnown RBP5.52□□□□□ -1.53
GTF3C1-202ENST00000561623 TNRC18O15417 2968 aaPredicted RBP5.52□□□□□ -1.53
GTF3C1-202ENST00000561623 TNP1P09430 55 aa5.5□□□□□ -1.53
GTF3C1-202ENST00000561623 COL12A1Q99715 3063 aa5.5□□□□□ -1.53
GTF3C1-202ENST00000561623 ZZEF1O43149 2961 aa5.49□□□□□ -1.53
GTF3C1-202ENST00000561623 NBPF19A0A087WUL8 3843 aa5.45□□□□□ -1.54
GTF3C1-202ENST00000561623 DCHS1Q96JQ0 3298 aa5.44□□□□□ -1.54
GTF3C1-202ENST00000561623 LOC400499M0QZD8 3231 aa5.42□□□□□ -1.54
GTF3C1-202ENST00000561623 DMXL1Q9Y485 3027 aa5.41□□□□□ -1.54
GTF3C1-202ENST00000561623 CELSR2Q9HCU4 2923 aa5.39□□□□□ -1.55
GTF3C1-202ENST00000561623 PRO2289Q9P1D8 64 aa5.39□□□□□ -1.55
GTF3C1-202ENST00000561623 KRTAP1-4P0C5Y4 121 aa5.38□□□□□ -1.55
GTF3C1-202ENST00000561623 LAMA5O15230 3695 aa5.36□□□□□ -1.55
GTF3C1-202ENST00000561623 PP632Q6XCG6 107 aa5.33□□□□□ -1.56
GTF3C1-202ENST00000561623 XP32Q5T750 250 aa5.32□□□□□ -1.56
GTF3C1-202ENST00000561623 DCHS2Q6V1P9 2916 aa5.3□□□□□ -1.56
GTF3C1-202ENST00000561623 NIPBLQ6KC79 2804 aaeCLIP5.28□□□□□ -1.56
GTF3C1-202ENST00000561623 ZANQ9Y493 2812 aa5.28□□□□□ -1.56
GTF3C1-202ENST00000561623 HRNRQ86YZ3 2850 aaPredicted RBP5.27□□□□□ -1.57
GTF3C1-202ENST00000561623 RELNP78509 3460 aa5.26□□□□□ -1.57
GTF3C1-202ENST00000561623 KRTAP13-3Q3SY46 172 aa5.25□□□□□ -1.57
GTF3C1-202ENST00000561623 ZFHX4Q86UP3 3567 aa5.24□□□□□ -1.57
GTF3C1-202ENST00000561623 FBN2P35556 2912 aa5.24□□□□□ -1.57
GTF3C1-202ENST00000561623 TENM1Q9UKZ4 2725 aa5.23□□□□□ -1.57
GTF3C1-202ENST00000561623 CSMD1Q96PZ7 3565 aa5.2□□□□□ -1.58
GTF3C1-202ENST00000561623 KRTAP12-2P59991 146 aa5.19□□□□□ -1.58
GTF3C1-202ENST00000561623 TGP01266 2768 aa5.19□□□□□ -1.58
GTF3C1-202ENST00000561623 TPRXLQ17RH7 258 aa5.18□□□□□ -1.58
GTF3C1-202ENST00000561623 NF1P21359 2839 aa5.16□□□□□ -1.58
GTF3C1-202ENST00000561623 DMDP11532 3685 aa5.16□□□□□ -1.58
GTF3C1-202ENST00000561623 TENM2Q9NT68 2774 aa5.15□□□□□ -1.59
GTF3C1-202ENST00000561623 MUC3AQ02505 3323 aa5.13□□□□□ -1.59
GTF3C1-202ENST00000561623 SPENQ96T58 3664 aaKnown RBP5.11□□□□□ -1.59
GTF3C1-202ENST00000561623 TENM3Q9P273 2699 aa5.09□□□□□ -1.59
GTF3C1-202ENST00000561623 CELSR1Q9NYQ6 3014 aa5.08□□□□□ -1.6
GTF3C1-202ENST00000561623 PKD1L1Q8TDX9 2849 aa5.07□□□□□ -1.6
GTF3C1-202ENST00000561623 CRCT1Q9UGL9 99 aa5.07□□□□□ -1.6
GTF3C1-202ENST00000561623 KRTAP12-1P59990 96 aa5.04□□□□□ -1.6
GTF3C1-202ENST00000561623 KRTAP3-1Q9BYR8 98 aa5.02□□□□□ -1.61
GTF3C1-202ENST00000561623 ZFHX3Q15911 3703 aa5.01□□□□□ -1.61
GTF3C1-202ENST00000561623 MXRA5Q9NR99 2828 aa5□□□□□ -1.61
GTF3C1-202ENST00000561623 SMG1Q96Q15 3661 aaKnown RBP5□□□□□ -1.61
GTF3C1-202ENST00000561623 KRTAP13-4Q3LI77 160 aa4.98□□□□□ -1.61
GTF3C1-202ENST00000561623 CUBNO60494 3623 aa4.98□□□□□ -1.61
GTF3C1-202ENST00000561623 VWFP04275 2813 aa4.94□□□□□ -1.62
GTF3C1-202ENST00000561623 PDZD2O15018 2839 aa4.94□□□□□ -1.62
GTF3C1-202ENST00000561623 SVEP1Q4LDE5 3571 aa4.92□□□□□ -1.62
GTF3C1-202ENST00000561623 CSMD2Q7Z408 3487 aa4.89□□□□□ -1.63
GTF3C1-202ENST00000561623 KRTAP10-6P60371 365 aaPredicted RBP4.89□□□□□ -1.63
GTF3C1-202ENST00000561623 FBN3Q75N90 2809 aa4.86□□□□□ -1.63
GTF3C1-202ENST00000561623 KRTAP15-1Q3LI76 137 aa4.85□□□□□ -1.63
GTF3C1-202ENST00000561623 LORP23490 312 aaPredicted RBP4.83□□□□□ -1.64
GTF3C1-202ENST00000561623 ANK3Q12955 4377 aaKnown RBP4.8□□□□□ -1.64
GTF3C1-202ENST00000561623 SRRM2Q9UQ35 2752 aaKnown RBP4.79□□□□□ -1.64
GTF3C1-202ENST00000561623 BSNQ9UPA5 3926 aa4.75□□□□□ -1.65
GTF3C1-202ENST00000561623 KRTAP3-2Q9BYR7 98 aa4.71□□□□□ -1.66
GTF3C1-202ENST00000561623 TRRAPQ9Y4A5 3859 aa4.7□□□□□ -1.66
GTF3C1-202ENST00000561623 FBN1P35555 2871 aaKnown RBP4.7□□□□□ -1.66
GTF3C1-202ENST00000561623 KRTAP3-3Q9BYR6 98 aa4.68□□□□□ -1.66
GTF3C1-202ENST00000561623 KRTAP4-5Q9BYR2 181 aa4.67□□□□□ -1.66
GTF3C1-202ENST00000561623 MEGF8Q7Z7M0 2845 aa4.66□□□□□ -1.66
GTF3C1-202ENST00000561623 VPS13CQ709C8 3753 aa4.65□□□□□ -1.66
GTF3C1-202ENST00000561623 CSMD3Q7Z407 3707 aa4.64□□□□□ -1.67
GTF3C1-202ENST00000561623 INE1O15225 51 aa4.62□□□□□ -1.67
GTF3C1-202ENST00000561623 OTOGQ6ZRI0 2925 aa4.6□□□□□ -1.67
GTF3C1-202ENST00000561623 HUWE1Q7Z6Z7 4374 aaKnown RBP4.58□□□□□ -1.68
GTF3C1-202ENST00000561623 COL7A1Q02388 2944 aa4.51□□□□□ -1.69
GTF3C1-202ENST00000561623 MT1HL1P0DM35 61 aa4.48□□□□□ -1.69
GTF3C1-202ENST00000561623 KRTAP10-12P60413 245 aa4.48□□□□□ -1.69
GTF3C1-202ENST00000561623 KRTAP8-1Q8IUC2 63 aa4.47□□□□□ -1.69
GTF3C1-202ENST00000561623 AKAP9Q99996 3911 aa4.45□□□□□ -1.7
GTF3C1-202ENST00000561623 ALMS1Q8TCU4 4167 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms