RNA–Protein interactions for RNA: ENST00000559937.1

SMAD3-212, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 579 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-212ENST00000559937 FP248Q71RG6 208 aaPredicted RBP4.76□□□□□ -1.65
SMAD3-212ENST00000559937 MRPL34Q9BQ48 92 aaKnown RBP4.76□□□□□ -1.65
SMAD3-212ENST00000559937 DNAH2Q9P225 4427 aa4.75□□□□□ -1.65
SMAD3-212ENST00000559937 IGHV6-1A0A0B4J1U7 121 aa4.75□□□□□ -1.65
SMAD3-212ENST00000559937 C1orf64Q8NEQ6 169 aa4.75□□□□□ -1.65
SMAD3-212ENST00000559937 DNAH17Q9UFH2 4485 aa4.75□□□□□ -1.65
SMAD3-212ENST00000559937 FAT2Q9NYQ8 4349 aa4.75□□□□□ -1.65
SMAD3-212ENST00000559937 C4orf26Q17RF5 130 aa4.74□□□□□ -1.65
SMAD3-212ENST00000559937 PKHD1P08F94 4074 aa4.73□□□□□ -1.65
SMAD3-212ENST00000559937 HERC2O95714 4834 aa4.71□□□□□ -1.66
SMAD3-212ENST00000559937 DNAH11Q96DT5 4516 aa4.71□□□□□ -1.66
SMAD3-212ENST00000559937 KRTAP13-2Q52LG2 175 aa4.71□□□□□ -1.66
SMAD3-212ENST00000559937 LINC00336Q6ZUF6 198 aa4.71□□□□□ -1.66
SMAD3-212ENST00000559937 LIMD2Q9BT23 127 aa4.71□□□□□ -1.66
SMAD3-212ENST00000559937 DYNC1H1Q14204 4646 aaKnown RBP4.71□□□□□ -1.66
SMAD3-212ENST00000559937 IGLV7-46A0A075B6I9 117 aa4.7□□□□□ -1.66
SMAD3-212ENST00000559937 A0A087X002 238 aa4.69□□□□□ -1.66
SMAD3-212ENST00000559937 NDUFS5O43920 106 aa4.69□□□□□ -1.66
SMAD3-212ENST00000559937 KRTAP1-4P0C5Y4 121 aa4.69□□□□□ -1.66
SMAD3-212ENST00000559937 Q1T7F1 81 aa4.69□□□□□ -1.66
SMAD3-212ENST00000559937 SPINK6Q6UWN8 80 aa4.69□□□□□ -1.66
SMAD3-212ENST00000559937 V9GYY9 64 aa4.69□□□□□ -1.66
SMAD3-212ENST00000559937 KIAA1109Q2LD37 5005 aa4.69□□□□□ -1.66
SMAD3-212ENST00000559937 LOC101927531A0A1B0GV80 90 aa4.68□□□□□ -1.66
SMAD3-212ENST00000559937 NOTCH2NLQ7Z3S9 236 aa4.68□□□□□ -1.66
SMAD3-212ENST00000559937 PCLOQ9Y6V0 5065 aa4.67□□□□□ -1.66
SMAD3-212ENST00000559937 KRTAP13-3Q3SY46 172 aa4.67□□□□□ -1.66
SMAD3-212ENST00000559937 C1orf195Q5TG92 126 aa4.67□□□□□ -1.66
SMAD3-212ENST00000559937 PKD1P98161 4303 aa4.66□□□□□ -1.66
SMAD3-212ENST00000559937 LINC00313P59037 77 aa4.66□□□□□ -1.66
SMAD3-212ENST00000559937 PRR4Q16378 134 aa4.66□□□□□ -1.66
SMAD3-212ENST00000559937 RPS29P62273 56 aaKnown RBP4.65□□□□□ -1.67
SMAD3-212ENST00000559937 Q8N9P0 234 aaPredicted RBP4.65□□□□□ -1.67
SMAD3-212ENST00000559937 MPLKIPQ8TAP9 179 aa4.65□□□□□ -1.67
SMAD3-212ENST00000559937 RYR1P21817 5038 aa4.65□□□□□ -1.67
SMAD3-212ENST00000559937 FAM229AH3BQW9 127 aa4.64□□□□□ -1.67
SMAD3-212ENST00000559937 SPINK1P00995 79 aa4.64□□□□□ -1.67
SMAD3-212ENST00000559937 C4orf48Q5BLP8 95 aa4.64□□□□□ -1.67
SMAD3-212ENST00000559937 A0A1B0GVY2 172 aa4.63□□□□□ -1.67
SMAD3-212ENST00000559937 PLA2G1BP04054 148 aaKnown RBP4.63□□□□□ -1.67
SMAD3-212ENST00000559937 PCOTHQ58A44 107 aa4.63□□□□□ -1.67
SMAD3-212ENST00000559937 TYMSOSQ8TAI1 123 aa4.63□□□□□ -1.67
SMAD3-212ENST00000559937 LRP1BQ9NZR2 4599 aa4.62□□□□□ -1.67
SMAD3-212ENST00000559937 SPAG11AQ6PDA7 123 aa4.62□□□□□ -1.67
SMAD3-212ENST00000559937 COA5Q86WW8 74 aa4.62□□□□□ -1.67
SMAD3-212ENST00000559937 PRO0628Q9UI54 55 aa4.62□□□□□ -1.67
SMAD3-212ENST00000559937 HSPG2P98160 4391 aa4.61□□□□□ -1.67
SMAD3-212ENST00000559937 KRTAP16-1A8MUX0 517 aa4.61□□□□□ -1.67
SMAD3-212ENST00000559937 Q5W150 140 aa4.61□□□□□ -1.67
SMAD3-212ENST00000559937 DNAH8Q96JB1 4490 aa4.6□□□□□ -1.67
SMAD3-212ENST00000559937 IGKV2-30P06310 120 aa4.58□□□□□ -1.68
SMAD3-212ENST00000559937 LINC00304Q8N9R0 145 aa4.58□□□□□ -1.68
SMAD3-212ENST00000559937 APOBP04114 4563 aaKnown RBP4.57□□□□□ -1.68
SMAD3-212ENST00000559937 DNAH5Q8TE73 4624 aa4.57□□□□□ -1.68
SMAD3-212ENST00000559937 HRES1P13985 223 aa4.56□□□□□ -1.68
SMAD3-212ENST00000559937 ACYP2P14621 99 aa4.55□□□□□ -1.68
SMAD3-212ENST00000559937 A8MUN3 132 aa4.54□□□□□ -1.68
SMAD3-212ENST00000559937 KRTAP10-4P60372 401 aaPredicted RBP4.54□□□□□ -1.68
SMAD3-212ENST00000559937 PRR26Q8N8Z3 221 aa4.54□□□□□ -1.68
SMAD3-212ENST00000559937 BRK1Q8WUW1 75 aa4.54□□□□□ -1.68
SMAD3-212ENST00000559937 DMAC1Q96GE9 116 aa4.54□□□□□ -1.68
SMAD3-212ENST00000559937 LINC01558Q9Y6Z2 57 aa4.54□□□□□ -1.68
SMAD3-212ENST00000559937 FAT1Q14517 4588 aa4.54□□□□□ -1.68
SMAD3-212ENST00000559937 PSPHP1O15172 72 aa4.53□□□□□ -1.68
SMAD3-212ENST00000559937 Q5VV11 94 aa4.53□□□□□ -1.68
SMAD3-212ENST00000559937 ABCA13Q86UQ4 5058 aa4.53□□□□□ -1.68
SMAD3-212ENST00000559937 Q75L30 129 aa4.52□□□□□ -1.69
SMAD3-212ENST00000559937 PRR15LQ9BU68 103 aa4.51□□□□□ -1.69
SMAD3-212ENST00000559937 SMR3BP02814 79 aaPredicted RBP4.5□□□□□ -1.69
SMAD3-212ENST00000559937 KRTAP4-5Q9BYR2 181 aa4.5□□□□□ -1.69
SMAD3-212ENST00000559937 RETNLBQ9BQ08 111 aa4.48□□□□□ -1.69
SMAD3-212ENST00000559937 DMBT1Q9UGM3 2413 aaPredicted RBP4.47□□□□□ -1.69
SMAD3-212ENST00000559937 UBR4Q5T4S7 5183 aa4.47□□□□□ -1.69
SMAD3-212ENST00000559937 A8MUU9 505 aa4.47□□□□□ -1.69
SMAD3-212ENST00000559937 CHKB-CPT1BH3BT56 60 aa4.47□□□□□ -1.69
SMAD3-212ENST00000559937 C7orf65Q6ZTY9 151 aa4.47□□□□□ -1.69
SMAD3-212ENST00000559937 C20orf166-AS1Q96NR2 134 aa4.47□□□□□ -1.69
SMAD3-212ENST00000559937 FLG2Q5D862 2391 aaPredicted RBP4.46□□□□□ -1.7
SMAD3-212ENST00000559937 IGKV2D-30A0A075B6S6 120 aa4.46□□□□□ -1.7
SMAD3-212ENST00000559937 HERC1Q15751 4861 aa4.44□□□□□ -1.7
SMAD3-212ENST00000559937 Q8N1X5 172 aa4.44□□□□□ -1.7
SMAD3-212ENST00000559937 VPS13BQ7Z7G8 4022 aa4.42□□□□□ -1.7
SMAD3-212ENST00000559937 MYCBP2O75592 4640 aa4.42□□□□□ -1.7
SMAD3-212ENST00000559937 A6NED7 52 aa4.41□□□□□ -1.7
SMAD3-212ENST00000559937 CDC42SE1Q9NRR8 79 aa4.41□□□□□ -1.7
SMAD3-212ENST00000559937 KRTAP10-8P60410 259 aa4.39□□□□□ -1.71
SMAD3-212ENST00000559937 C9orf92A6NGG3 77 aa4.38□□□□□ -1.71
SMAD3-212ENST00000559937 ATP11AUNQ6ZP68 121 aa4.38□□□□□ -1.71
SMAD3-212ENST00000559937 LCA10Q71F78 164 aa4.38□□□□□ -1.71
SMAD3-212ENST00000559937 SPTSSBQ8NFR3 76 aa4.37□□□□□ -1.71
SMAD3-212ENST00000559937 A0A1B0GU69 56 aa4.36□□□□□ -1.71
SMAD3-212ENST00000559937 Q5VSD8 79 aa4.36□□□□□ -1.71
SMAD3-212ENST00000559937 SPINK7P58062 85 aa4.35□□□□□ -1.71
SMAD3-212ENST00000559937 PKHD1L1Q86WI1 4243 aa4.33□□□□□ -1.72
SMAD3-212ENST00000559937 A8MU10 97 aa4.33□□□□□ -1.72
SMAD3-212ENST00000559937 LRP1Q07954 4544 aaKnown RBP4.31□□□□□ -1.72
SMAD3-212ENST00000559937 PMAIP1Q13794 54 aa4.31□□□□□ -1.72
SMAD3-212ENST00000559937 UQCR11O14957 56 aa4.29□□□□□ -1.72
SMAD3-212ENST00000559937 SPATA8Q6RVD6 105 aa4.29□□□□□ -1.72
SMAD3-212ENST00000559937 A6NN06 94 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms