RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 C8orf87E5RJ46 101 aa5.5□□□□□ -1.53
USP3-216ENST00000559873 A8MWP4 228 aa5.49□□□□□ -1.53
USP3-216ENST00000559873 LINC00313P59037 77 aa5.49□□□□□ -1.53
USP3-216ENST00000559873 MUC17Q685J3 4493 aa5.48□□□□□ -1.53
USP3-216ENST00000559873 BPY2O14599 106 aa5.48□□□□□ -1.53
USP3-216ENST00000559873 Q6ZVQ6 151 aa5.48□□□□□ -1.53
USP3-216ENST00000559873 ACYP1P07311 99 aa5.47□□□□□ -1.53
USP3-216ENST00000559873 DSCR10P59022 87 aa5.47□□□□□ -1.53
USP3-216ENST00000559873 RPL37P61927 97 aaKnown RBP5.47□□□□□ -1.53
USP3-216ENST00000559873 LINC00846Q9NV44 126 aa5.46□□□□□ -1.54
USP3-216ENST00000559873 FAM240AA0A1B0GVK7 77 aa5.45□□□□□ -1.54
USP3-216ENST00000559873 Q75L30 129 aa5.45□□□□□ -1.54
USP3-216ENST00000559873 PRR15Q8IV56 129 aa5.44□□□□□ -1.54
USP3-216ENST00000559873 IGKV3D-7A0A0C4DH55 119 aa5.43□□□□□ -1.54
USP3-216ENST00000559873 J3QR89 54 aa5.43□□□□□ -1.54
USP3-216ENST00000559873 ATP11AUNQ6ZP68 121 aa5.43□□□□□ -1.54
USP3-216ENST00000559873 C20orf166-AS1Q96NR2 134 aa5.43□□□□□ -1.54
USP3-216ENST00000559873 A8MUU9 505 aa5.42□□□□□ -1.54
USP3-216ENST00000559873 PCOTHQ58A44 107 aa5.42□□□□□ -1.54
USP3-216ENST00000559873 C8orf17Q9NRJ1 99 aa5.42□□□□□ -1.54
USP3-216ENST00000559873 RNF213Q63HN8 5207 aa5.41□□□□□ -1.54
USP3-216ENST00000559873 K7EQZ3 153 aa5.41□□□□□ -1.54
USP3-216ENST00000559873 A0A0U1RQV1 116 aa5.4□□□□□ -1.54
USP3-216ENST00000559873 KRTAP16-1A8MUX0 517 aa5.4□□□□□ -1.54
USP3-216ENST00000559873 CXCL6P80162 114 aa5.39□□□□□ -1.55
USP3-216ENST00000559873 ATP5EP2Q5VTU8 51 aa5.39□□□□□ -1.55
USP3-216ENST00000559873 NOTCH2NLQ7Z3S9 236 aa5.39□□□□□ -1.55
USP3-216ENST00000559873 TMEM254Q8TBM7 123 aa5.39□□□□□ -1.55
USP3-216ENST00000559873 MMP24-AS1A0A0U1RRL7 71 aa5.37□□□□□ -1.55
USP3-216ENST00000559873 hDV103S1A0JD37 113 aa5.37□□□□□ -1.55
USP3-216ENST00000559873 Q8N9L7 120 aa5.36□□□□□ -1.55
USP3-216ENST00000559873 MRPL34Q9BQ48 92 aaKnown RBP5.36□□□□□ -1.55
USP3-216ENST00000559873 Q8N9P0 234 aaPredicted RBP5.35□□□□□ -1.55
USP3-216ENST00000559873 HCG22E2RYF7 251 aa5.34□□□□□ -1.55
USP3-216ENST00000559873 LCE2DQ5TA82 110 aaPredicted RBP5.34□□□□□ -1.55
USP3-216ENST00000559873 CASC2Q6XLA1 102 aa5.34□□□□□ -1.55
USP3-216ENST00000559873 MUC2Q02817 5179 aa5.34□□□□□ -1.55
USP3-216ENST00000559873 NDUFS5O43920 106 aa5.33□□□□□ -1.56
USP3-216ENST00000559873 LINC00643Q86TS7 51 aa5.33□□□□□ -1.56
USP3-216ENST00000559873 WFDC13Q8IUB5 93 aa5.33□□□□□ -1.56
USP3-216ENST00000559873 ZCCHC13Q8WW36 166 aaKnown RBP5.32□□□□□ -1.56
USP3-216ENST00000559873 K7ERU9 68 aa5.31□□□□□ -1.56
USP3-216ENST00000559873 HIST1H4AP62805 103 aaKnown RBP5.29□□□□□ -1.56
USP3-216ENST00000559873 KRTAP4-1Q9BYQ7 146 aa5.28□□□□□ -1.56
USP3-216ENST00000559873 TP53AIP1Q9HCN2 124 aa5.25□□□□□ -1.57
USP3-216ENST00000559873 FAT4Q6V0I7 4981 aa5.25□□□□□ -1.57
USP3-216ENST00000559873 COX6B2Q6YFQ2 88 aa5.23□□□□□ -1.57
USP3-216ENST00000559873 SPINK7P58062 85 aa5.2□□□□□ -1.58
USP3-216ENST00000559873 RBM12B-AS1Q9P1G2 102 aa5.2□□□□□ -1.58
USP3-216ENST00000559873 A0A087WVE0 104 aa5.19□□□□□ -1.58
USP3-216ENST00000559873 C7orf65Q6ZTY9 151 aa5.19□□□□□ -1.58
USP3-216ENST00000559873 IGKV2D-30A0A075B6S6 120 aa5.17□□□□□ -1.58
USP3-216ENST00000559873 FAM236DA0A1B0GTK5 79 aa5.17□□□□□ -1.58
USP3-216ENST00000559873 IGKV2-30P06310 120 aa5.17□□□□□ -1.58
USP3-216ENST00000559873 FAM236CP0DP71 79 aa5.17□□□□□ -1.58
USP3-216ENST00000559873 IMUPQ9GZP8 106 aa5.17□□□□□ -1.58
USP3-216ENST00000559873 HRES1P13985 223 aa5.16□□□□□ -1.58
USP3-216ENST00000559873 Q5W150 140 aa5.16□□□□□ -1.58
USP3-216ENST00000559873 TRAV22A0A0B4J277 110 aa5.15□□□□□ -1.59
USP3-216ENST00000559873 UQCRQO14949 82 aa5.14□□□□□ -1.59
USP3-216ENST00000559873 ATOX1O00244 68 aa5.13□□□□□ -1.59
USP3-216ENST00000559873 SCGB1A1P11684 91 aa5.13□□□□□ -1.59
USP3-216ENST00000559873 KRTAP19-2Q3LHN2 52 aa5.13□□□□□ -1.59
USP3-216ENST00000559873 MT-ATP8P03928 68 aa5.12□□□□□ -1.59
USP3-216ENST00000559873 MPLKIPQ8TAP9 179 aa5.12□□□□□ -1.59
USP3-216ENST00000559873 LCE2CQ5TA81 110 aa5.11□□□□□ -1.59
USP3-216ENST00000559873 LOC101927531A0A1B0GV80 90 aa5.1□□□□□ -1.59
USP3-216ENST00000559873 LCE2AQ5TA79 106 aaPredicted RBP5.1□□□□□ -1.59
USP3-216ENST00000559873 H0Y9P7 68 aa5.09□□□□□ -1.59
USP3-216ENST00000559873 MP68P56378 58 aa5.09□□□□□ -1.59
USP3-216ENST00000559873 FLGP20930 4061 aaPredicted RBP5.08□□□□□ -1.6
USP3-216ENST00000559873 M0R2T5 61 aa5.08□□□□□ -1.6
USP3-216ENST00000559873 MT1HP80294 61 aa5.08□□□□□ -1.6
USP3-216ENST00000559873 OCR1Q9BZK8 76 aa5.08□□□□□ -1.6
USP3-216ENST00000559873 FAM236AA0A1B0GUQ0 79 aa5.07□□□□□ -1.6
USP3-216ENST00000559873 FAM236BA0A1B0GV22 79 aa5.07□□□□□ -1.6
USP3-216ENST00000559873 SMIM20Q8N5G0 67 aa5.07□□□□□ -1.6
USP3-216ENST00000559873 C5orf47Q569G3 176 aa5.06□□□□□ -1.6
USP3-216ENST00000559873 CYP4F30PQ9H0H9 118 aa5.04□□□□□ -1.6
USP3-216ENST00000559873 H3BPC8 53 aa5.03□□□□□ -1.6
USP3-216ENST00000559873 C1orf64Q8NEQ6 169 aa5.03□□□□□ -1.6
USP3-216ENST00000559873 C4orf26Q17RF5 130 aa5.02□□□□□ -1.61
USP3-216ENST00000559873 LINC00208Q96KT6 92 aa5.02□□□□□ -1.61
USP3-216ENST00000559873 TRAV7A0A075B6U4 112 aa5□□□□□ -1.61
USP3-216ENST00000559873 H1FX-AS1Q4G0G2 97 aa5□□□□□ -1.61
USP3-216ENST00000559873 KRTAP10-6P60371 365 aaPredicted RBP4.94□□□□□ -1.62
USP3-216ENST00000559873 A8MUN3 132 aa4.93□□□□□ -1.62
USP3-216ENST00000559873 SERP2Q8N6R1 65 aa4.93□□□□□ -1.62
USP3-216ENST00000559873 LORP23490 312 aaPredicted RBP4.92□□□□□ -1.62
USP3-216ENST00000559873 KLKP1Q107X0 134 aa4.91□□□□□ -1.62
USP3-216ENST00000559873 S4R3F8 94 aa4.91□□□□□ -1.62
USP3-216ENST00000559873 KRTAP3-1Q9BYR8 98 aa4.89□□□□□ -1.63
USP3-216ENST00000559873 C20orf197Q8N268 126 aa4.86□□□□□ -1.63
USP3-216ENST00000559873 CSAG1Q6PB30 78 aa4.85□□□□□ -1.63
USP3-216ENST00000559873 COX7CP15954 63 aa4.84□□□□□ -1.63
USP3-216ENST00000559873 LCA10Q71F78 164 aa4.84□□□□□ -1.63
USP3-216ENST00000559873 DMAC1Q96GE9 116 aa4.84□□□□□ -1.63
USP3-216ENST00000559873 SNURFQ9Y675 71 aa4.84□□□□□ -1.63
USP3-216ENST00000559873 ANAPC13Q9BS18 74 aa4.82□□□□□ -1.64
USP3-216ENST00000559873 KRTAP3-3Q9BYR6 98 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms