RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 J3KT08 172 aa9.35□□□□□ -0.91
SHMT2-225ENST00000556798 F8W1H4 67 aa9.34□□□□□ -0.91
SHMT2-225ENST00000556798 LINC00313P59037 77 aa9.34□□□□□ -0.91
SHMT2-225ENST00000556798 NREPQ16612 68 aa9.34□□□□□ -0.91
SHMT2-225ENST00000556798 A0A1B0GVX0 72 aa9.33□□□□□ -0.92
SHMT2-225ENST00000556798 Q75L30 129 aa9.33□□□□□ -0.92
SHMT2-225ENST00000556798 ETDBQ3ZM63 59 aa9.31□□□□□ -0.92
SHMT2-225ENST00000556798 KRTAP16-1A8MUX0 517 aa9.3□□□□□ -0.92
SHMT2-225ENST00000556798 C20orf166-AS1Q96NR2 134 aa9.3□□□□□ -0.92
SHMT2-225ENST00000556798 A8MUU9 505 aa9.29□□□□□ -0.92
SHMT2-225ENST00000556798 A8MWP4 228 aa9.28□□□□□ -0.92
SHMT2-225ENST00000556798 C8orf87E5RJ46 101 aa9.28□□□□□ -0.92
SHMT2-225ENST00000556798 NDUFB1O75438 58 aa9.28□□□□□ -0.92
SHMT2-225ENST00000556798 A0A1B0GV90 55 aa9.27□□□□□ -0.93
SHMT2-225ENST00000556798 IGKV3D-7A0A0C4DH55 119 aa9.26□□□□□ -0.93
SHMT2-225ENST00000556798 ATP11AUNQ6ZP68 121 aa9.26□□□□□ -0.93
SHMT2-225ENST00000556798 Q6ZVQ6 151 aa9.26□□□□□ -0.93
SHMT2-225ENST00000556798 A0A0U1RQV1 116 aa9.24□□□□□ -0.93
SHMT2-225ENST00000556798 LINC00846Q9NV44 126 aa9.23□□□□□ -0.93
SHMT2-225ENST00000556798 BPY2O14599 106 aa9.22□□□□□ -0.93
SHMT2-225ENST00000556798 C8orf17Q9NRJ1 99 aa9.22□□□□□ -0.93
SHMT2-225ENST00000556798 PRR15Q8IV56 129 aa9.21□□□□□ -0.94
SHMT2-225ENST00000556798 FAT4Q6V0I7 4981 aa9.21□□□□□ -0.94
SHMT2-225ENST00000556798 K7EQZ3 153 aa9.2□□□□□ -0.94
SHMT2-225ENST00000556798 UBL5Q9BZL1 73 aa9.18□□□□□ -0.94
SHMT2-225ENST00000556798 MMP24-AS1A0A0U1RRL7 71 aa9.15□□□□□ -0.94
SHMT2-225ENST00000556798 Q8N9L7 120 aa9.15□□□□□ -0.94
SHMT2-225ENST00000556798 Q8N9P0 234 aaPredicted RBP9.1□□□□□ -0.95
SHMT2-225ENST00000556798 KRTAP19-2Q3LHN2 52 aa9.09□□□□□ -0.95
SHMT2-225ENST00000556798 TMEM254Q8TBM7 123 aa9.08□□□□□ -0.96
SHMT2-225ENST00000556798 hDV103S1A0JD37 113 aa9.07□□□□□ -0.96
SHMT2-225ENST00000556798 MRPL34Q9BQ48 92 aaKnown RBP9.07□□□□□ -0.96
SHMT2-225ENST00000556798 ZCCHC13Q8WW36 166 aaKnown RBP9.06□□□□□ -0.96
SHMT2-225ENST00000556798 LCE2CQ5TA81 110 aa9.05□□□□□ -0.96
SHMT2-225ENST00000556798 WFDC13Q8IUB5 93 aa9.05□□□□□ -0.96
SHMT2-225ENST00000556798 LCE2AQ5TA79 106 aaPredicted RBP9.04□□□□□ -0.96
SHMT2-225ENST00000556798 FAM240AA0A1B0GVK7 77 aa9.02□□□□□ -0.97
SHMT2-225ENST00000556798 ACYP1P07311 99 aa9.02□□□□□ -0.97
SHMT2-225ENST00000556798 NDUFS5O43920 106 aa9.01□□□□□ -0.97
SHMT2-225ENST00000556798 CASC2Q6XLA1 102 aa9.01□□□□□ -0.97
SHMT2-225ENST00000556798 CXCL6P80162 114 aa9□□□□□ -0.97
SHMT2-225ENST00000556798 COX6B2Q6YFQ2 88 aa8.99□□□□□ -0.97
SHMT2-225ENST00000556798 HCG22E2RYF7 251 aa8.97□□□□□ -0.97
SHMT2-225ENST00000556798 MT1HP80294 61 aa8.92□□□□□ -0.98
SHMT2-225ENST00000556798 HRES1P13985 223 aa8.91□□□□□ -0.98
SHMT2-225ENST00000556798 SPINK7P58062 85 aa8.91□□□□□ -0.98
SHMT2-225ENST00000556798 ATP5EP2Q5VTU8 51 aa8.89□□□□□ -0.99
SHMT2-225ENST00000556798 Q5W150 140 aa8.88□□□□□ -0.99
SHMT2-225ENST00000556798 FLGP20930 4061 aaPredicted RBP8.85□□□□□ -0.99
SHMT2-225ENST00000556798 MPLKIPQ8TAP9 179 aa8.85□□□□□ -0.99
SHMT2-225ENST00000556798 FAM236DA0A1B0GTK5 79 aa8.84□□□□□ -0.99
SHMT2-225ENST00000556798 J3QR89 54 aa8.84□□□□□ -0.99
SHMT2-225ENST00000556798 FAM236CP0DP71 79 aa8.84□□□□□ -0.99
SHMT2-225ENST00000556798 HIST1H4AP62805 103 aaKnown RBP8.84□□□□□ -0.99
SHMT2-225ENST00000556798 LINC00643Q86TS7 51 aa8.84□□□□□ -0.99
SHMT2-225ENST00000556798 RBM12B-AS1Q9P1G2 102 aa8.83□□□□□ -1
SHMT2-225ENST00000556798 IGKV2D-30A0A075B6S6 120 aa8.8□□□□□ -1
SHMT2-225ENST00000556798 IGKV2-30P06310 120 aa8.8□□□□□ -1
SHMT2-225ENST00000556798 M0R2T5 61 aa8.78□□□□□ -1
SHMT2-225ENST00000556798 A0A087WVE0 104 aa8.77□□□□□ -1.01
SHMT2-225ENST00000556798 C7orf65Q6ZTY9 151 aa8.75□□□□□ -1.01
SHMT2-225ENST00000556798 TP53AIP1Q9HCN2 124 aa8.75□□□□□ -1.01
SHMT2-225ENST00000556798 KRTAP10-6P60371 365 aaPredicted RBP8.69□□□□□ -1.02
SHMT2-225ENST00000556798 K7ERU9 68 aa8.67□□□□□ -1.02
SHMT2-225ENST00000556798 LORP23490 312 aaPredicted RBP8.66□□□□□ -1.02
SHMT2-225ENST00000556798 TRAV22A0A0B4J277 110 aa8.62□□□□□ -1.03
SHMT2-225ENST00000556798 C4orf26Q17RF5 130 aa8.61□□□□□ -1.03
SHMT2-225ENST00000556798 UQCRQO14949 82 aa8.6□□□□□ -1.03
SHMT2-225ENST00000556798 MT-ATP8P03928 68 aa8.57□□□□□ -1.04
SHMT2-225ENST00000556798 H0Y9P7 68 aa8.56□□□□□ -1.04
SHMT2-225ENST00000556798 H1FX-AS1Q4G0G2 97 aa8.55□□□□□ -1.04
SHMT2-225ENST00000556798 KRTAP9-2Q9BYQ4 174 aa8.54□□□□□ -1.04
SHMT2-225ENST00000556798 OCR1Q9BZK8 76 aa8.54□□□□□ -1.04
SHMT2-225ENST00000556798 CYP4F30PQ9H0H9 118 aa8.54□□□□□ -1.04
SHMT2-225ENST00000556798 LOC101927531A0A1B0GV80 90 aa8.53□□□□□ -1.04
SHMT2-225ENST00000556798 ATOX1O00244 68 aa8.5□□□□□ -1.05
SHMT2-225ENST00000556798 IMUPQ9GZP8 106 aa8.49□□□□□ -1.05
SHMT2-225ENST00000556798 KRTAP9-8Q9BYQ0 159 aa8.48□□□□□ -1.05
SHMT2-225ENST00000556798 KRTAP3-1Q9BYR8 98 aa8.48□□□□□ -1.05
SHMT2-225ENST00000556798 SCGB1A1P11684 91 aa8.47□□□□□ -1.05
SHMT2-225ENST00000556798 C1orf64Q8NEQ6 169 aa8.47□□□□□ -1.05
SHMT2-225ENST00000556798 LINC00208Q96KT6 92 aa8.45□□□□□ -1.06
SHMT2-225ENST00000556798 LCE2DQ5TA82 110 aaPredicted RBP8.44□□□□□ -1.06
SHMT2-225ENST00000556798 MP68P56378 58 aa8.43□□□□□ -1.06
SHMT2-225ENST00000556798 FAM236AA0A1B0GUQ0 79 aa8.41□□□□□ -1.06
SHMT2-225ENST00000556798 FAM236BA0A1B0GV22 79 aa8.41□□□□□ -1.06
SHMT2-225ENST00000556798 MT2AP02795 61 aa8.41□□□□□ -1.06
SHMT2-225ENST00000556798 C5orf47Q569G3 176 aa8.4□□□□□ -1.06
SHMT2-225ENST00000556798 KLKP1Q107X0 134 aa8.37□□□□□ -1.07
SHMT2-225ENST00000556798 MT1FP04733 61 aa8.36□□□□□ -1.07
SHMT2-225ENST00000556798 S4R3F8 94 aa8.36□□□□□ -1.07
SHMT2-225ENST00000556798 H3BPC8 53 aa8.32□□□□□ -1.08
SHMT2-225ENST00000556798 KRTAP10-10P60014 251 aa8.31□□□□□ -1.08
SHMT2-225ENST00000556798 LCA10Q71F78 164 aa8.31□□□□□ -1.08
SHMT2-225ENST00000556798 TRAV7A0A075B6U4 112 aa8.29□□□□□ -1.08
SHMT2-225ENST00000556798 SMIM20Q8N5G0 67 aa8.28□□□□□ -1.08
SHMT2-225ENST00000556798 CSAG1Q6PB30 78 aa8.22□□□□□ -1.09
SHMT2-225ENST00000556798 FSIP2Q5CZC0 6907 aa8.22□□□□□ -1.09
SHMT2-225ENST00000556798 KRTAP3-3Q9BYR6 98 aa8.21□□□□□ -1.1
SHMT2-225ENST00000556798 A8MUN3 132 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms