RNA–Protein interactions for RNA: ENST00000556498.1

TDP1-215, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-215ENST00000556498 USP9YO00507 2555 aaPredicted RBP3.16□□□□□ -1.9
TDP1-215ENST00000556498 LRRK2Q5S007 2527 aa3.16□□□□□ -1.9
TDP1-215ENST00000556498 MYO18BQ8IUG5 2567 aa3.15□□□□□ -1.9
TDP1-215ENST00000556498 CFAP46Q8IYW2 2715 aa3.15□□□□□ -1.9
TDP1-215ENST00000556498 ADGRG4Q8IZF6 3080 aa3.15□□□□□ -1.9
TDP1-215ENST00000556498 SPINK1P00995 79 aa3.15□□□□□ -1.91
TDP1-215ENST00000556498 KRTAP10-12P60413 245 aa3.15□□□□□ -1.91
TDP1-215ENST00000556498 DEFB136Q30KP8 78 aa3.14□□□□□ -1.91
TDP1-215ENST00000556498 CREBBPQ92793 2442 aa3.13□□□□□ -1.91
TDP1-215ENST00000556498 SMG1Q96Q15 3661 aaKnown RBP3.13□□□□□ -1.91
TDP1-215ENST00000556498 ABCA2Q9BZC7 2435 aa3.12□□□□□ -1.91
TDP1-215ENST00000556498 KALRNO60229 2985 aa3.12□□□□□ -1.91
TDP1-215ENST00000556498 HIVEP2P31629 2446 aa3.12□□□□□ -1.91
TDP1-215ENST00000556498 PRRC2CQ9Y520 2896 aaKnown RBP3.11□□□□□ -1.91
TDP1-215ENST00000556498 CHD6Q8TD26 2715 aa3.11□□□□□ -1.91
TDP1-215ENST00000556498 COL12A1Q99715 3063 aa3.11□□□□□ -1.91
TDP1-215ENST00000556498 CSPG4Q6UVK1 2322 aa3.1□□□□□ -1.91
TDP1-215ENST00000556498 KRTAP10-3P60369 221 aa3.1□□□□□ -1.91
TDP1-215ENST00000556498 KRTAP10-7P60409 375 aaPredicted RBP3.1□□□□□ -1.91
TDP1-215ENST00000556498 FBN2P35556 2912 aa3.1□□□□□ -1.91
TDP1-215ENST00000556498 FASNP49327 2511 aaKnown RBP3.09□□□□□ -1.91
TDP1-215ENST00000556498 S4R3F8 94 aa3.09□□□□□ -1.91
TDP1-215ENST00000556498 HELZ2Q9BYK8 2649 aaKnown RBP3.08□□□□□ -1.92
TDP1-215ENST00000556498 CCDC168Q8NDH2 2452 aa3.08□□□□□ -1.92
TDP1-215ENST00000556498 POLQO75417 2590 aa3.08□□□□□ -1.92
TDP1-215ENST00000556498 UNC79Q9P2D8 2635 aa3.08□□□□□ -1.92
TDP1-215ENST00000556498 HRNRQ86YZ3 2850 aaPredicted RBP3.07□□□□□ -1.92
TDP1-215ENST00000556498 H3BNG1 76 aa3.07□□□□□ -1.92
TDP1-215ENST00000556498 LCE1EQ5T753 118 aa3.07□□□□□ -1.92
TDP1-215ENST00000556498 ABCA12Q86UK0 2595 aa3.07□□□□□ -1.92
TDP1-215ENST00000556498 NOTCH2Q04721 2471 aa3.07□□□□□ -1.92
TDP1-215ENST00000556498 FLNCQ14315 2725 aa3.06□□□□□ -1.92
TDP1-215ENST00000556498 NBEAQ8NFP9 2946 aa3.06□□□□□ -1.92
TDP1-215ENST00000556498 APLNQ9ULZ1 77 aa3.06□□□□□ -1.92
TDP1-215ENST00000556498 FLG2Q5D862 2391 aaPredicted RBP3.05□□□□□ -1.92
TDP1-215ENST00000556498 NOTCH3Q9UM47 2321 aa3.05□□□□□ -1.92
TDP1-215ENST00000556498 PDZD2O15018 2839 aa3.04□□□□□ -1.92
TDP1-215ENST00000556498 A0A096LPF7 62 aa3.04□□□□□ -1.92
TDP1-215ENST00000556498 KRTAP10-8P60410 259 aa3.04□□□□□ -1.92
TDP1-215ENST00000556498 FN1P02751 2386 aaKnown RBP3.04□□□□□ -1.92
TDP1-215ENST00000556498 APCP25054 2843 aa3.04□□□□□ -1.92
TDP1-215ENST00000556498 HECTD1Q9ULT8 2610 aa3.04□□□□□ -1.92
TDP1-215ENST00000556498 A0A1B0GVY2 172 aa3.03□□□□□ -1.92
TDP1-215ENST00000556498 KRTAP21-3Q3LHN1 58 aa3.03□□□□□ -1.92
TDP1-215ENST00000556498 LCE3CQ5T5A8 94 aa3.03□□□□□ -1.92
TDP1-215ENST00000556498 MYO9AB2RTY4 2548 aa3.03□□□□□ -1.92
TDP1-215ENST00000556498 ITPR3Q14573 2671 aa3.02□□□□□ -1.93
TDP1-215ENST00000556498 KRTAP10-5P60370 271 aa3.02□□□□□ -1.93
TDP1-215ENST00000556498 SONP18583 2426 aaKnown RBP3.02□□□□□ -1.93
TDP1-215ENST00000556498 SPRR5A0A1B0GTR4 108 aa3.01□□□□□ -1.93
TDP1-215ENST00000556498 ACANP16112 2415 aa3.01□□□□□ -1.93
TDP1-215ENST00000556498 F8P00451 2351 aa3.01□□□□□ -1.93
TDP1-215ENST00000556498 TENM4Q6N022 2769 aa3□□□□□ -1.93
TDP1-215ENST00000556498 FLNAP21333 2647 aaKnown RBP3□□□□□ -1.93
TDP1-215ENST00000556498 ANK3Q12955 4377 aaKnown RBP3□□□□□ -1.93
TDP1-215ENST00000556498 LINC01556Q5JQF7 62 aa3□□□□□ -1.93
TDP1-215ENST00000556498 CSMD2Q7Z408 3487 aa2.99□□□□□ -1.93
TDP1-215ENST00000556498 A0A096LNI7 61 aa2.99□□□□□ -1.93
TDP1-215ENST00000556498 SPART-AS1P0CW21 52 aa2.99□□□□□ -1.93
TDP1-215ENST00000556498 NBPF19A0A087WUL8 3843 aa2.99□□□□□ -1.93
TDP1-215ENST00000556498 DCHS2Q6V1P9 2916 aa2.99□□□□□ -1.93
TDP1-215ENST00000556498 UTP20O75691 2785 aaKnown RBP2.98□□□□□ -1.93
TDP1-215ENST00000556498 DEFB135Q30KP9 77 aa2.98□□□□□ -1.93
TDP1-215ENST00000556498 TLN2Q9Y4G6 2542 aa2.98□□□□□ -1.93
TDP1-215ENST00000556498 LRBAP50851 2863 aa2.98□□□□□ -1.93
TDP1-215ENST00000556498 GCN1Q92616 2671 aaKnown RBP2.97□□□□□ -1.93
TDP1-215ENST00000556498 C2CD3Q4AC94 2353 aa2.97□□□□□ -1.93
TDP1-215ENST00000556498 CELSR2Q9HCU4 2923 aa2.97□□□□□ -1.93
TDP1-215ENST00000556498 CSMD1Q96PZ7 3565 aa2.96□□□□□ -1.94
TDP1-215ENST00000556498 A0A0D9SG42 100 aa2.96□□□□□ -1.94
TDP1-215ENST00000556498 KRTAP1-4P0C5Y4 121 aa2.96□□□□□ -1.94
TDP1-215ENST00000556498 KRTAP13-1Q8IUC0 172 aa2.96□□□□□ -1.94
TDP1-215ENST00000556498 MTORP42345 2549 aa2.96□□□□□ -1.94
TDP1-215ENST00000556498 BAHCC1Q9P281 2608 aa2.96□□□□□ -1.94
TDP1-215ENST00000556498 ITPR2Q14571 2701 aa2.96□□□□□ -1.94
TDP1-215ENST00000556498 FLNBO75369 2602 aaKnown RBP2.95□□□□□ -1.94
TDP1-215ENST00000556498 SPINK6Q6UWN8 80 aa2.95□□□□□ -1.94
TDP1-215ENST00000556498 ZNF469Q96JG9 3925 aaPredicted RBP2.95□□□□□ -1.94
TDP1-215ENST00000556498 ASH1LQ9NR48 2969 aaKnown RBP2.95□□□□□ -1.94
TDP1-215ENST00000556498 HIVEP1P15822 2718 aa2.95□□□□□ -1.94
TDP1-215ENST00000556498 OTOGQ6ZRI0 2925 aa2.95□□□□□ -1.94
TDP1-215ENST00000556498 Q5VSD8 79 aa2.94□□□□□ -1.94
TDP1-215ENST00000556498 KRTAP5-11Q6L8G4 156 aa2.94□□□□□ -1.94
TDP1-215ENST00000556498 AKAP9Q99996 3911 aa2.94□□□□□ -1.94
TDP1-215ENST00000556498 TEX15Q9BXT5 2789 aa2.94□□□□□ -1.94
TDP1-215ENST00000556498 SVEP1Q4LDE5 3571 aa2.93□□□□□ -1.94
TDP1-215ENST00000556498 CRYBG3Q68DQ2 2970 aa2.93□□□□□ -1.94
TDP1-215ENST00000556498 CENPEQ02224 2701 aa2.92□□□□□ -1.94
TDP1-215ENST00000556498 M0QZ58 72 aa2.92□□□□□ -1.94
TDP1-215ENST00000556498 DEFB4AO15263 64 aa2.92□□□□□ -1.94
TDP1-215ENST00000556498 KRTAP12-1P59990 96 aa2.92□□□□□ -1.94
TDP1-215ENST00000556498 NSD1Q96L73 2696 aaPredicted RBP2.91□□□□□ -1.94
TDP1-215ENST00000556498 TENM2Q9NT68 2774 aa2.91□□□□□ -1.94
TDP1-215ENST00000556498 VPS13CQ709C8 3753 aa2.91□□□□□ -1.94
TDP1-215ENST00000556498 JMJD1CQ15652 2540 aa2.9□□□□□ -1.94
TDP1-215ENST00000556498 ZANQ9Y493 2812 aa2.9□□□□□ -1.94
TDP1-215ENST00000556498 HTN3P15516 51 aa2.9□□□□□ -1.95
TDP1-215ENST00000556498 TACC2O95359 2948 aa2.9□□□□□ -1.95
TDP1-215ENST00000556498 KRTAP13-4Q3LI77 160 aa2.88□□□□□ -1.95
TDP1-215ENST00000556498 KRTAP13-2Q52LG2 175 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms