RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 CRCT1Q9UGL9 99 aa9.34□□□□□ -0.91
SHMT2-206ENST00000553529 C9JAW5 83 aa9.33□□□□□ -0.92
SHMT2-206ENST00000553529 UBE2V1Q13404 147 aa9.33□□□□□ -0.92
SHMT2-206ENST00000553529 TMEM256-PLSCR3K7ERE1 68 aa9.32□□□□□ -0.92
SHMT2-206ENST00000553529 VPS25Q9BRG1 176 aa9.32□□□□□ -0.92
SHMT2-206ENST00000553529 LINC00472Q9H8W2 130 aa9.32□□□□□ -0.92
SHMT2-206ENST00000553529 H3BQ85 93 aa9.29□□□□□ -0.92
SHMT2-206ENST00000553529 LINC00313P59037 77 aa9.28□□□□□ -0.92
SHMT2-206ENST00000553529 MTURNQ8N3F0 131 aa9.28□□□□□ -0.92
SHMT2-206ENST00000553529 IGHV6-1A0A0B4J1U7 121 aa9.27□□□□□ -0.93
SHMT2-206ENST00000553529 F8W1H4 67 aa9.26□□□□□ -0.93
SHMT2-206ENST00000553529 H3BT86 120 aa9.26□□□□□ -0.93
SHMT2-206ENST00000553529 BAALC-AS2P0C853 105 aa9.26□□□□□ -0.93
SHMT2-206ENST00000553529 RBM3P98179 157 aaKnown RBP9.22□□□□□ -0.93
SHMT2-206ENST00000553529 PRO0461Q9UI25 63 aa9.19□□□□□ -0.94
SHMT2-206ENST00000553529 DSCR8Q96T75 97 aa9.18□□□□□ -0.94
SHMT2-206ENST00000553529 HRES1P13985 223 aa9.17□□□□□ -0.94
SHMT2-206ENST00000553529 KRTAP9-8Q9BYQ0 159 aa9.17□□□□□ -0.94
SHMT2-206ENST00000553529 A0A1B0GVX0 72 aa9.16□□□□□ -0.94
SHMT2-206ENST00000553529 SMCPP49901 116 aaPredicted RBP9.16□□□□□ -0.94
SHMT2-206ENST00000553529 JMJD7-PLA2G4BH0Y9G9 81 aa9.14□□□□□ -0.95
SHMT2-206ENST00000553529 ETDBQ3ZM63 59 aa9.13□□□□□ -0.95
SHMT2-206ENST00000553529 Q6ZQT0 140 aa9.13□□□□□ -0.95
SHMT2-206ENST00000553529 MPLKIPQ8TAP9 179 aa9.12□□□□□ -0.95
SHMT2-206ENST00000553529 C14orf132Q9NPU4 83 aa9.1□□□□□ -0.95
SHMT2-206ENST00000553529 FAM236DA0A1B0GTK5 79 aa9.08□□□□□ -0.96
SHMT2-206ENST00000553529 FAM236CP0DP71 79 aa9.08□□□□□ -0.96
SHMT2-206ENST00000553529 C8orf87E5RJ46 101 aa9.07□□□□□ -0.96
SHMT2-206ENST00000553529 LOC110117498A0A087WWA1 95 aa9.05□□□□□ -0.96
SHMT2-206ENST00000553529 MT2AP02795 61 aa9.05□□□□□ -0.96
SHMT2-206ENST00000553529 IGKV3D-7A0A0C4DH55 119 aa9.04□□□□□ -0.96
SHMT2-206ENST00000553529 J3QR89 54 aa9.04□□□□□ -0.96
SHMT2-206ENST00000553529 PDE6GP18545 87 aa9.04□□□□□ -0.96
SHMT2-206ENST00000553529 C21orf62-AS1Q17RA5 79 aa9.04□□□□□ -0.96
SHMT2-206ENST00000553529 ZCCHC13Q8WW36 166 aaKnown RBP9.03□□□□□ -0.96
SHMT2-206ENST00000553529 C8orf17Q9NRJ1 99 aa9.02□□□□□ -0.97
SHMT2-206ENST00000553529 MT1FP04733 61 aa9.01□□□□□ -0.97
SHMT2-206ENST00000553529 USH2AO75445 5202 aa9.01□□□□□ -0.97
SHMT2-206ENST00000553529 J3KT08 172 aa9□□□□□ -0.97
SHMT2-206ENST00000553529 A8MWP4 228 aa8.99□□□□□ -0.97
SHMT2-206ENST00000553529 SPINK7P58062 85 aa8.98□□□□□ -0.97
SHMT2-206ENST00000553529 Q8N9P0 234 aaPredicted RBP8.98□□□□□ -0.97
SHMT2-206ENST00000553529 RBM12B-AS1Q9P1G2 102 aa8.98□□□□□ -0.97
SHMT2-206ENST00000553529 K7ERU9 68 aa8.97□□□□□ -0.97
SHMT2-206ENST00000553529 SSPOA2VEC9 5147 aa8.94□□□□□ -0.98
SHMT2-206ENST00000553529 NDUFB1O75438 58 aa8.94□□□□□ -0.98
SHMT2-206ENST00000553529 MMP24-AS1A0A0U1RRL7 71 aa8.92□□□□□ -0.98
SHMT2-206ENST00000553529 LCE2BO14633 110 aa8.91□□□□□ -0.98
SHMT2-206ENST00000553529 Q6ZVQ6 151 aa8.91□□□□□ -0.98
SHMT2-206ENST00000553529 PRR15Q8IV56 129 aa8.91□□□□□ -0.98
SHMT2-206ENST00000553529 K7EQZ3 153 aa8.9□□□□□ -0.98
SHMT2-206ENST00000553529 ACYP1P07311 99 aa8.9□□□□□ -0.98
SHMT2-206ENST00000553529 NREPQ16612 68 aa8.89□□□□□ -0.99
SHMT2-206ENST00000553529 WFDC13Q8IUB5 93 aa8.89□□□□□ -0.99
SHMT2-206ENST00000553529 FAM240AA0A1B0GVK7 77 aa8.88□□□□□ -0.99
SHMT2-206ENST00000553529 KRTAP9-3Q9BYQ3 159 aa8.88□□□□□ -0.99
SHMT2-206ENST00000553529 A0A1B0GW54 56 aa8.87□□□□□ -0.99
SHMT2-206ENST00000553529 KRTAP10-10P60014 251 aa8.85□□□□□ -0.99
SHMT2-206ENST00000553529 UBL5Q9BZL1 73 aa8.84□□□□□ -0.99
SHMT2-206ENST00000553529 Q8N9L7 120 aa8.83□□□□□ -1
SHMT2-206ENST00000553529 MRPL34Q9BQ48 92 aaKnown RBP8.83□□□□□ -1
SHMT2-206ENST00000553529 TMEM254Q8TBM7 123 aa8.81□□□□□ -1
SHMT2-206ENST00000553529 LINC00846Q9NV44 126 aa8.8□□□□□ -1
SHMT2-206ENST00000553529 hDV103S1A0JD37 113 aa8.78□□□□□ -1
SHMT2-206ENST00000553529 NDUFS5O43920 106 aa8.78□□□□□ -1
SHMT2-206ENST00000553529 Q5W150 140 aa8.78□□□□□ -1
SHMT2-206ENST00000553529 BPY2O14599 106 aa8.76□□□□□ -1.01
SHMT2-206ENST00000553529 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.74□□□□□ -1.01
SHMT2-206ENST00000553529 KRTAP19-1Q8IUB9 90 aa8.74□□□□□ -1.01
SHMT2-206ENST00000553529 LINC00643Q86TS7 51 aa8.72□□□□□ -1.01
SHMT2-206ENST00000553529 IGKV2D-30A0A075B6S6 120 aa8.71□□□□□ -1.02
SHMT2-206ENST00000553529 IGKV2-30P06310 120 aa8.71□□□□□ -1.02
SHMT2-206ENST00000553529 ATP5EP2Q5VTU8 51 aa8.7□□□□□ -1.02
SHMT2-206ENST00000553529 FCGBPQ9Y6R7 5405 aaPredicted RBP8.69□□□□□ -1.02
SHMT2-206ENST00000553529 HCG22E2RYF7 251 aa8.65□□□□□ -1.02
SHMT2-206ENST00000553529 CASC2Q6XLA1 102 aa8.65□□□□□ -1.02
SHMT2-206ENST00000553529 CXCL6P80162 114 aa8.64□□□□□ -1.03
SHMT2-206ENST00000553529 H1FX-AS1Q4G0G2 97 aa8.62□□□□□ -1.03
SHMT2-206ENST00000553529 KRTAP9-7A8MTY7 169 aa8.61□□□□□ -1.03
SHMT2-206ENST00000553529 HIST1H4AP62805 103 aaKnown RBP8.6□□□□□ -1.03
SHMT2-206ENST00000553529 MT-ATP8P03928 68 aa8.58□□□□□ -1.04
SHMT2-206ENST00000553529 C4orf26Q17RF5 130 aa8.58□□□□□ -1.04
SHMT2-206ENST00000553529 C7orf65Q6ZTY9 151 aa8.58□□□□□ -1.04
SHMT2-206ENST00000553529 IMUPQ9GZP8 106 aa8.52□□□□□ -1.05
SHMT2-206ENST00000553529 KRTAP3-1Q9BYR8 98 aa8.51□□□□□ -1.05
SHMT2-206ENST00000553529 KRTAP19-6Q3LI70 58 aa8.48□□□□□ -1.05
SHMT2-206ENST00000553529 A0A087WVE0 104 aa8.47□□□□□ -1.05
SHMT2-206ENST00000553529 C5orf47Q569G3 176 aa8.44□□□□□ -1.06
SHMT2-206ENST00000553529 MACF1Q9UPN3 7388 aaKnown RBP8.43□□□□□ -1.06
SHMT2-206ENST00000553529 SCGB1A1P11684 91 aa8.42□□□□□ -1.06
SHMT2-206ENST00000553529 FAM236AA0A1B0GUQ0 79 aa8.4□□□□□ -1.06
SHMT2-206ENST00000553529 FAM236BA0A1B0GV22 79 aa8.4□□□□□ -1.06
SHMT2-206ENST00000553529 SYNE2Q8WXH0 6885 aaKnown RBP8.35□□□□□ -1.07
SHMT2-206ENST00000553529 C1orf64Q8NEQ6 169 aa8.35□□□□□ -1.07
SHMT2-206ENST00000553529 LCA10Q71F78 164 aa8.34□□□□□ -1.07
SHMT2-206ENST00000553529 S4R3F8 94 aa8.33□□□□□ -1.08
SHMT2-206ENST00000553529 ATOX1O00244 68 aa8.32□□□□□ -1.08
SHMT2-206ENST00000553529 SMIM20Q8N5G0 67 aa8.29□□□□□ -1.08
SHMT2-206ENST00000553529 KRTAP3-3Q9BYR6 98 aa8.27□□□□□ -1.09
SHMT2-206ENST00000553529 TP53AIP1Q9HCN2 124 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms