RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 CHD7Q9P2D1 2997 aa1.56□□□□□ -2.16
VPS29-210ENST00000552130 NBASA2RRP1 2371 aa1.56□□□□□ -2.16
VPS29-210ENST00000552130 ZNF469Q96JG9 3925 aaPredicted RBP1.56□□□□□ -2.16
VPS29-210ENST00000552130 KRTAP19-3Q7Z4W3 81 aa1.55□□□□□ -2.16
VPS29-210ENST00000552130 PRKDCP78527 4128 aaKnown RBP1.55□□□□□ -2.16
VPS29-210ENST00000552130 DNAH12Q6ZR08 3092 aa1.54□□□□□ -2.16
VPS29-210ENST00000552130 USP34Q70CQ2 3546 aa1.54□□□□□ -2.16
VPS29-210ENST00000552130 M0QY20 66 aa1.54□□□□□ -2.16
VPS29-210ENST00000552130 KRTAP2-3P0C7H8 128 aa1.54□□□□□ -2.16
VPS29-210ENST00000552130 CLPSL2Q6UWE3 100 aa1.54□□□□□ -2.16
VPS29-210ENST00000552130 KRTAP2-4Q9BYR9 128 aa1.54□□□□□ -2.16
VPS29-210ENST00000552130 KRTAP2-1Q9BYU5 128 aa1.54□□□□□ -2.16
VPS29-210ENST00000552130 FBN3Q75N90 2809 aa1.54□□□□□ -2.16
VPS29-210ENST00000552130 DCHS1Q96JQ0 3298 aa1.54□□□□□ -2.16
VPS29-210ENST00000552130 MAP1BP46821 2468 aaKnown RBP1.54□□□□□ -2.16
VPS29-210ENST00000552130 LAMA2P24043 3122 aaKnown RBP1.53□□□□□ -2.16
VPS29-210ENST00000552130 DNAH14Q0VDD8 3507 aa1.51□□□□□ -2.17
VPS29-210ENST00000552130 U3KQA8 63 aa1.51□□□□□ -2.17
VPS29-210ENST00000552130 MYO15AQ9UKN7 3530 aa1.51□□□□□ -2.17
VPS29-210ENST00000552130 WDFY4Q6ZS81 3184 aa1.5□□□□□ -2.17
VPS29-210ENST00000552130 C5orf42Q9H799 3197 aa1.5□□□□□ -2.17
VPS29-210ENST00000552130 A8MTW9 85 aa1.5□□□□□ -2.17
VPS29-210ENST00000552130 LEAP2Q969E1 77 aa1.5□□□□□ -2.17
VPS29-210ENST00000552130 ZFYVE26Q68DK2 2539 aa1.5□□□□□ -2.17
VPS29-210ENST00000552130 PTPN13Q12923 2485 aa1.5□□□□□ -2.17
VPS29-210ENST00000552130 UBR5O95071 2799 aaPredicted RBP1.5□□□□□ -2.17
VPS29-210ENST00000552130 FAT2Q9NYQ8 4349 aa1.49□□□□□ -2.17
VPS29-210ENST00000552130 CFAP54Q96N23 3096 aa1.48□□□□□ -2.17
VPS29-210ENST00000552130 SPEGQ15772 3267 aa1.47□□□□□ -2.17
VPS29-210ENST00000552130 DEFB133Q30KQ1 61 aa1.47□□□□□ -2.17
VPS29-210ENST00000552130 TNXBP22105 4242 aa1.47□□□□□ -2.17
VPS29-210ENST00000552130 DMDP11532 3685 aa1.46□□□□□ -2.18
VPS29-210ENST00000552130 HIVEP3Q5T1R4 2406 aa1.46□□□□□ -2.18
VPS29-210ENST00000552130 DMXL1Q9Y485 3027 aa1.45□□□□□ -2.18
VPS29-210ENST00000552130 PKD1L1Q8TDX9 2849 aa1.45□□□□□ -2.18
VPS29-210ENST00000552130 COX14Q96I36 57 aa1.45□□□□□ -2.18
VPS29-210ENST00000552130 SETXQ7Z333 2677 aaKnown RBP1.45□□□□□ -2.18
VPS29-210ENST00000552130 NAV2Q8IVL1 2488 aa1.45□□□□□ -2.18
VPS29-210ENST00000552130 USP24Q9UPU5 2620 aa1.45□□□□□ -2.18
VPS29-210ENST00000552130 ASPMQ8IZT6 3477 aa1.45□□□□□ -2.18
VPS29-210ENST00000552130 NCOR2Q9Y618 2525 aa1.44□□□□□ -2.18
VPS29-210ENST00000552130 FAM186AA6NE01 2351 aa1.43□□□□□ -2.18
VPS29-210ENST00000552130 CFAP47Q6ZTR5 3102 aa1.43□□□□□ -2.18
VPS29-210ENST00000552130 WNK1Q9H4A3 2382 aa1.43□□□□□ -2.18
VPS29-210ENST00000552130 TRIOO75962 3097 aa1.42□□□□□ -2.18
VPS29-210ENST00000552130 LYSTQ99698 3801 aa1.42□□□□□ -2.18
VPS29-210ENST00000552130 WDFY3Q8IZQ1 3526 aa1.42□□□□□ -2.18
VPS29-210ENST00000552130 VPS13AQ96RL7 3174 aa1.42□□□□□ -2.18
VPS29-210ENST00000552130 EPG5Q9HCE0 2579 aa1.42□□□□□ -2.18
VPS29-210ENST00000552130 ACACBO00763 2458 aa1.41□□□□□ -2.18
VPS29-210ENST00000552130 M0QZ58 72 aa1.41□□□□□ -2.18
VPS29-210ENST00000552130 TOMM7Q9P0U1 55 aa1.41□□□□□ -2.18
VPS29-210ENST00000552130 FREM2Q5SZK8 3169 aa1.41□□□□□ -2.18
VPS29-210ENST00000552130 DMBT1Q9UGM3 2413 aaPredicted RBP1.4□□□□□ -2.18
VPS29-210ENST00000552130 NF1P21359 2839 aa1.4□□□□□ -2.18
VPS29-210ENST00000552130 PRM1P04553 51 aa1.4□□□□□ -2.19
VPS29-210ENST00000552130 TTTY10Q9BZA0 68 aa1.4□□□□□ -2.19
VPS29-210ENST00000552130 ITPR1Q14643 2758 aa1.4□□□□□ -2.19
VPS29-210ENST00000552130 NOTCH1P46531 2555 aa1.4□□□□□ -2.19
VPS29-210ENST00000552130 FRYQ5TBA9 3013 aa1.4□□□□□ -2.19
VPS29-210ENST00000552130 CEP250Q9BV73 2442 aa1.39□□□□□ -2.19
VPS29-210ENST00000552130 ZZEF1O43149 2961 aa1.39□□□□□ -2.19
VPS29-210ENST00000552130 LOC400499M0QZD8 3231 aa1.39□□□□□ -2.19
VPS29-210ENST00000552130 SETD2Q9BYW2 2564 aaPredicted RBP1.39□□□□□ -2.19
VPS29-210ENST00000552130 FRYLO94915 3013 aa1.39□□□□□ -2.19
VPS29-210ENST00000552130 RIF1Q5UIP0 2472 aaKnown RBP1.39□□□□□ -2.19
VPS29-210ENST00000552130 TEP1Q99973 2627 aaKnown RBP1.38□□□□□ -2.19
VPS29-210ENST00000552130 DMXL2Q8TDJ6 3036 aa1.38□□□□□ -2.19
VPS29-210ENST00000552130 SPTBN4Q9H254 2564 aa1.38□□□□□ -2.19
VPS29-210ENST00000552130 ACACAQ13085 2346 aa1.38□□□□□ -2.19
VPS29-210ENST00000552130 WDR87Q6ZQQ6 2873 aa1.37□□□□□ -2.19
VPS29-210ENST00000552130 IGSF10Q6WRI0 2623 aa1.37□□□□□ -2.19
VPS29-210ENST00000552130 PDZD2O15018 2839 aa1.37□□□□□ -2.19
VPS29-210ENST00000552130 SMG1Q96Q15 3661 aaKnown RBP1.36□□□□□ -2.19
VPS29-210ENST00000552130 GCN1Q92616 2671 aaKnown RBP1.36□□□□□ -2.19
VPS29-210ENST00000552130 DEFB110Q30KQ9 67 aa1.36□□□□□ -2.19
VPS29-210ENST00000552130 FASNP49327 2511 aaKnown RBP1.36□□□□□ -2.19
VPS29-210ENST00000552130 MYO18BQ8IUG5 2567 aa1.36□□□□□ -2.19
VPS29-210ENST00000552130 ACANP16112 2415 aa1.36□□□□□ -2.19
VPS29-210ENST00000552130 COL6A5A8TX70 2615 aa1.36□□□□□ -2.19
VPS29-210ENST00000552130 CELSR3Q9NYQ7 3312 aa1.35□□□□□ -2.19
VPS29-210ENST00000552130 NBEAQ8NFP9 2946 aa1.35□□□□□ -2.19
VPS29-210ENST00000552130 C9orf92A6NGG3 77 aa1.35□□□□□ -2.19
VPS29-210ENST00000552130 LINC01590Q5TEZ4 76 aa1.35□□□□□ -2.19
VPS29-210ENST00000552130 LAMA5O15230 3695 aa1.35□□□□□ -2.19
VPS29-210ENST00000552130 APC2O95996 2303 aa1.35□□□□□ -2.19
VPS29-210ENST00000552130 MAST4O15021 2626 aa1.35□□□□□ -2.19
VPS29-210ENST00000552130 LAMA1P25391 3075 aa1.34□□□□□ -2.19
VPS29-210ENST00000552130 TENM1Q9UKZ4 2725 aa1.34□□□□□ -2.19
VPS29-210ENST00000552130 CEP295Q9C0D2 2601 aa1.34□□□□□ -2.19
VPS29-210ENST00000552130 DEFB108AA8MXU0 73 aa1.34□□□□□ -2.19
VPS29-210ENST00000552130 KALRNO60229 2985 aa1.34□□□□□ -2.2
VPS29-210ENST00000552130 HUWE1Q7Z6Z7 4374 aaKnown RBP1.33□□□□□ -2.2
VPS29-210ENST00000552130 CFAP46Q8IYW2 2715 aa1.33□□□□□ -2.2
VPS29-210ENST00000552130 RELNP78509 3460 aa1.33□□□□□ -2.2
VPS29-210ENST00000552130 USP9XQ93008 2570 aaPredicted RBP1.33□□□□□ -2.2
VPS29-210ENST00000552130 ATMQ13315 3056 aa1.32□□□□□ -2.2
VPS29-210ENST00000552130 STATHP02808 62 aa1.32□□□□□ -2.2
VPS29-210ENST00000552130 ANKRD11Q6UB99 2663 aaPredicted RBP1.31□□□□□ -2.2
VPS29-210ENST00000552130 FLNCQ14315 2725 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 105.4 ms