RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 C8orf87E5RJ46 101 aa6.29□□□□□ -1.4
PTCH1-221ENST00000550914 TMEM256-PLSCR3K7ERE1 68 aa6.29□□□□□ -1.4
PTCH1-221ENST00000550914 TRACP01848 142 aa6.29□□□□□ -1.4
PTCH1-221ENST00000550914 CCKP06307 115 aa6.29□□□□□ -1.4
PTCH1-221ENST00000550914 DEFB116Q30KQ4 102 aa6.29□□□□□ -1.4
PTCH1-221ENST00000550914 SPATA45Q537H7 98 aa6.29□□□□□ -1.4
PTCH1-221ENST00000550914 PAM16Q9Y3D7 125 aa6.29□□□□□ -1.4
PTCH1-221ENST00000550914 A0A1B0GVX0 72 aa6.26□□□□□ -1.41
PTCH1-221ENST00000550914 FXYD2P54710 66 aa6.26□□□□□ -1.41
PTCH1-221ENST00000550914 A0A1B0GV72 72 aa6.25□□□□□ -1.41
PTCH1-221ENST00000550914 S100A1P23297 94 aa6.25□□□□□ -1.41
PTCH1-221ENST00000550914 KRTAP19-6Q3LI70 58 aa6.25□□□□□ -1.41
PTCH1-221ENST00000550914 ZCCHC13Q8WW36 166 aaKnown RBP6.25□□□□□ -1.41
PTCH1-221ENST00000550914 VAMP8Q9BV40 100 aa6.25□□□□□ -1.41
PTCH1-221ENST00000550914 UBE2V1Q13404 147 aa6.24□□□□□ -1.41
PTCH1-221ENST00000550914 COX6CP09669 75 aa6.23□□□□□ -1.41
PTCH1-221ENST00000550914 SPINK7P58062 85 aa6.23□□□□□ -1.41
PTCH1-221ENST00000550914 PSMB2P49721 201 aa6.22□□□□□ -1.41
PTCH1-221ENST00000550914 A8MWP4 228 aa6.21□□□□□ -1.42
PTCH1-221ENST00000550914 J3KT08 172 aa6.21□□□□□ -1.42
PTCH1-221ENST00000550914 RBM3P98179 157 aaKnown RBP6.19□□□□□ -1.42
PTCH1-221ENST00000550914 Q8N9P0 234 aaPredicted RBP6.19□□□□□ -1.42
PTCH1-221ENST00000550914 HSD52Q0P140 79 aa6.18□□□□□ -1.42
PTCH1-221ENST00000550914 VPS25Q9BRG1 176 aa6.18□□□□□ -1.42
PTCH1-221ENST00000550914 MACF1Q9UPN3 7388 aaKnown RBP6.18□□□□□ -1.42
PTCH1-221ENST00000550914 DSCR8Q96T75 97 aa6.17□□□□□ -1.42
PTCH1-221ENST00000550914 K7ERJ3 54 aa6.16□□□□□ -1.42
PTCH1-221ENST00000550914 KRTAP4-12Q9BQ66 201 aa6.16□□□□□ -1.42
PTCH1-221ENST00000550914 SYNE2Q8WXH0 6885 aaKnown RBP6.16□□□□□ -1.42
PTCH1-221ENST00000550914 NDUFB1O75438 58 aa6.15□□□□□ -1.42
PTCH1-221ENST00000550914 Q6ZQT0 140 aa6.14□□□□□ -1.43
PTCH1-221ENST00000550914 WFDC13Q8IUB5 93 aa6.14□□□□□ -1.43
PTCH1-221ENST00000550914 C9JAW5 83 aa6.13□□□□□ -1.43
PTCH1-221ENST00000550914 LYRM7Q5U5X0 104 aa6.11□□□□□ -1.43
PTCH1-221ENST00000550914 A0A1B0GW54 56 aa6.1□□□□□ -1.43
PTCH1-221ENST00000550914 C8orf17Q9NRJ1 99 aa6.1□□□□□ -1.43
PTCH1-221ENST00000550914 SCGB1C2P0DMR2 95 aa6.09□□□□□ -1.43
PTCH1-221ENST00000550914 KRTAP6-3Q3LI67 103 aa6.09□□□□□ -1.43
PTCH1-221ENST00000550914 BAALC-AS2P0C853 105 aa6.08□□□□□ -1.44
PTCH1-221ENST00000550914 Q6ZVQ6 151 aa6.07□□□□□ -1.44
PTCH1-221ENST00000550914 IGKV3D-7A0A0C4DH55 119 aa6.06□□□□□ -1.44
PTCH1-221ENST00000550914 H1FX-AS1Q4G0G2 97 aa6.05□□□□□ -1.44
PTCH1-221ENST00000550914 PYY3Q5JQD4 70 aa6.05□□□□□ -1.44
PTCH1-221ENST00000550914 LOC110117498A0A087WWA1 95 aa6.04□□□□□ -1.44
PTCH1-221ENST00000550914 JMJD7-PLA2G4BH0Y9G9 81 aa6.04□□□□□ -1.44
PTCH1-221ENST00000550914 UQCR10Q9UDW1 63 aa6.04□□□□□ -1.44
PTCH1-221ENST00000550914 PDE6GP18545 87 aa6.03□□□□□ -1.44
PTCH1-221ENST00000550914 PRR15Q8IV56 129 aa6.02□□□□□ -1.45
PTCH1-221ENST00000550914 LCE3BQ5TA77 95 aa6.01□□□□□ -1.45
PTCH1-221ENST00000550914 TMEM254Q8TBM7 123 aa6□□□□□ -1.45
PTCH1-221ENST00000550914 MRPL34Q9BQ48 92 aaKnown RBP5.99□□□□□ -1.45
PTCH1-221ENST00000550914 MMP24-AS1A0A0U1RRL7 71 aa5.98□□□□□ -1.45
PTCH1-221ENST00000550914 ATXN8Q156A1 80 aa5.98□□□□□ -1.45
PTCH1-221ENST00000550914 NREPQ16612 68 aa5.97□□□□□ -1.45
PTCH1-221ENST00000550914 hDV103S1A0JD37 113 aa5.95□□□□□ -1.46
PTCH1-221ENST00000550914 C14orf132Q9NPU4 83 aa5.94□□□□□ -1.46
PTCH1-221ENST00000550914 KRTAP19-4Q3LI73 84 aa5.93□□□□□ -1.46
PTCH1-221ENST00000550914 C7orf65Q6ZTY9 151 aa5.93□□□□□ -1.46
PTCH1-221ENST00000550914 NDUFS5O43920 106 aa5.92□□□□□ -1.46
PTCH1-221ENST00000550914 IGKV2D-30A0A075B6S6 120 aa5.91□□□□□ -1.46
PTCH1-221ENST00000550914 IGKV2-30P06310 120 aa5.91□□□□□ -1.46
PTCH1-221ENST00000550914 K7EQZ3 153 aa5.9□□□□□ -1.46
PTCH1-221ENST00000550914 KRTAP9-9Q9BYP9 154 aa5.89□□□□□ -1.47
PTCH1-221ENST00000550914 KRTAP9-4Q9BYQ2 154 aa5.89□□□□□ -1.47
PTCH1-221ENST00000550914 M0R143 59 aa5.88□□□□□ -1.47
PTCH1-221ENST00000550914 Q5W150 140 aa5.88□□□□□ -1.47
PTCH1-221ENST00000550914 MUC12Q9UKN1 5478 aa5.87□□□□□ -1.47
PTCH1-221ENST00000550914 NAA38Q9BRA0 125 aaKnown RBP5.87□□□□□ -1.47
PTCH1-221ENST00000550914 A6NN06 94 aa5.86□□□□□ -1.47
PTCH1-221ENST00000550914 BPY2O14599 106 aa5.83□□□□□ -1.48
PTCH1-221ENST00000550914 C4orf26Q17RF5 130 aa5.83□□□□□ -1.48
PTCH1-221ENST00000550914 NEBP20929 6669 aa5.82□□□□□ -1.48
PTCH1-221ENST00000550914 FAM236AA0A1B0GUQ0 79 aa5.82□□□□□ -1.48
PTCH1-221ENST00000550914 FAM236BA0A1B0GV22 79 aa5.82□□□□□ -1.48
PTCH1-221ENST00000550914 MT1BP07438 61 aa5.82□□□□□ -1.48
PTCH1-221ENST00000550914 Q5VV11 94 aa5.82□□□□□ -1.48
PTCH1-221ENST00000550914 C5orf47Q569G3 176 aa5.81□□□□□ -1.48
PTCH1-221ENST00000550914 KRTAP19-8Q3LI54 63 aa5.8□□□□□ -1.48
PTCH1-221ENST00000550914 CASC2Q6XLA1 102 aa5.8□□□□□ -1.48
PTCH1-221ENST00000550914 SPRR2GQ9BYE4 73 aa5.8□□□□□ -1.48
PTCH1-221ENST00000550914 HCG22E2RYF7 251 aa5.79□□□□□ -1.48
PTCH1-221ENST00000550914 CXCL6P80162 114 aa5.79□□□□□ -1.48
PTCH1-221ENST00000550914 H3BT86 120 aa5.78□□□□□ -1.48
PTCH1-221ENST00000550914 CSAG1Q6PB30 78 aa5.77□□□□□ -1.49
PTCH1-221ENST00000550914 KRTAP10-5P60370 271 aa5.76□□□□□ -1.49
PTCH1-221ENST00000550914 S4R3F8 94 aa5.76□□□□□ -1.49
PTCH1-221ENST00000550914 KRTAP3-1Q9BYR8 98 aa5.75□□□□□ -1.49
PTCH1-221ENST00000550914 MDN1Q9NU22 5596 aa5.74□□□□□ -1.49
PTCH1-221ENST00000550914 KRTAP4-8A0A0G2JLE6 195 aa5.74□□□□□ -1.49
PTCH1-221ENST00000550914 Q8N9L7 120 aa5.74□□□□□ -1.49
PTCH1-221ENST00000550914 KMT2DO14686 5537 aa5.73□□□□□ -1.49
PTCH1-221ENST00000550914 KRTAP5-9P26371 169 aa5.73□□□□□ -1.49
PTCH1-221ENST00000550914 KRTAP20-1Q3LI63 56 aa5.73□□□□□ -1.49
PTCH1-221ENST00000550914 LCE4AQ5TA78 99 aa5.72□□□□□ -1.49
PTCH1-221ENST00000550914 LCA10Q71F78 164 aa5.71□□□□□ -1.5
PTCH1-221ENST00000550914 TSTD3H0UI37 97 aa5.7□□□□□ -1.5
PTCH1-221ENST00000550914 KLKP1Q107X0 134 aa5.7□□□□□ -1.5
PTCH1-221ENST00000550914 C1orf64Q8NEQ6 169 aa5.7□□□□□ -1.5
PTCH1-221ENST00000550914 C9orf118A6NHY6 69 aa5.67□□□□□ -1.5
PTCH1-221ENST00000550914 A0A1W2PPM0 123 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms