RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 NOTCH2NLQ7Z3S9 236 aa10.87□□□□□ -0.67
PRPF40B-208ENST00000548436 C1orf64Q8NEQ6 169 aa10.87□□□□□ -0.67
PRPF40B-208ENST00000548436 SSBP3-AS1Q7Z2R9 100 aa10.86□□□□□ -0.67
PRPF40B-208ENST00000548436 CYP4F30PQ9H0H9 118 aa10.86□□□□□ -0.67
PRPF40B-208ENST00000548436 CD164Q04900 197 aa10.85□□□□□ -0.67
PRPF40B-208ENST00000548436 SPINK6Q6UWN8 80 aa10.85□□□□□ -0.67
PRPF40B-208ENST00000548436 TP53AIP1Q9HCN2 124 aa10.83□□□□□ -0.68
PRPF40B-208ENST00000548436 MRPL34Q9BQ48 92 aaKnown RBP10.81□□□□□ -0.68
PRPF40B-208ENST00000548436 KRTAP13-2Q52LG2 175 aa10.81□□□□□ -0.68
PRPF40B-208ENST00000548436 NDUFS5O43920 106 aa10.8□□□□□ -0.68
PRPF40B-208ENST00000548436 VPS13BQ7Z7G8 4022 aa10.79□□□□□ -0.68
PRPF40B-208ENST00000548436 MPLKIPQ8TAP9 179 aa10.78□□□□□ -0.68
PRPF40B-208ENST00000548436 SPANXA2-OT1Q8N9U9 137 aa10.78□□□□□ -0.68
PRPF40B-208ENST00000548436 SACSQ9NZJ4 4579 aa10.75□□□□□ -0.69
PRPF40B-208ENST00000548436 KRTAP1-4P0C5Y4 121 aa10.73□□□□□ -0.69
PRPF40B-208ENST00000548436 KMT2CQ8NEZ4 4911 aaKnown RBP10.71□□□□□ -0.7
PRPF40B-208ENST00000548436 PCOTHQ58A44 107 aa10.7□□□□□ -0.7
PRPF40B-208ENST00000548436 PKHD1P08F94 4074 aa10.7□□□□□ -0.7
PRPF40B-208ENST00000548436 IGLV7-46A0A075B6I9 117 aa10.67□□□□□ -0.7
PRPF40B-208ENST00000548436 C1orf195Q5TG92 126 aa10.67□□□□□ -0.7
PRPF40B-208ENST00000548436 LINC00336Q6ZUF6 198 aa10.65□□□□□ -0.7
PRPF40B-208ENST00000548436 RYR2Q92736 4967 aa10.65□□□□□ -0.7
PRPF40B-208ENST00000548436 C8orf87E5RJ46 101 aa10.65□□□□□ -0.7
PRPF40B-208ENST00000548436 Q5W150 140 aa10.65□□□□□ -0.7
PRPF40B-208ENST00000548436 Q1T7F1 81 aa10.63□□□□□ -0.71
PRPF40B-208ENST00000548436 KRTAP13-3Q3SY46 172 aa10.62□□□□□ -0.71
PRPF40B-208ENST00000548436 PLA2G1BP04054 148 aaKnown RBP10.61□□□□□ -0.71
PRPF40B-208ENST00000548436 LINC00313P59037 77 aa10.61□□□□□ -0.71
PRPF40B-208ENST00000548436 LIMD2Q9BT23 127 aa10.56□□□□□ -0.72
PRPF40B-208ENST00000548436 Q8N9P0 234 aaPredicted RBP10.56□□□□□ -0.72
PRPF40B-208ENST00000548436 TYMSOSQ8TAI1 123 aa10.56□□□□□ -0.72
PRPF40B-208ENST00000548436 LOC101927531A0A1B0GV80 90 aa10.55□□□□□ -0.72
PRPF40B-208ENST00000548436 COA5Q86WW8 74 aa10.55□□□□□ -0.72
PRPF40B-208ENST00000548436 RYR3Q15413 4870 aa10.53□□□□□ -0.72
PRPF40B-208ENST00000548436 DYNC1H1Q14204 4646 aaKnown RBP10.52□□□□□ -0.73
PRPF40B-208ENST00000548436 KRTAP16-1A8MUX0 517 aa10.51□□□□□ -0.73
PRPF40B-208ENST00000548436 C4orf48Q5BLP8 95 aa10.51□□□□□ -0.73
PRPF40B-208ENST00000548436 PSPHP1O15172 72 aa10.5□□□□□ -0.73
PRPF40B-208ENST00000548436 A0A1B0GVY2 172 aa10.49□□□□□ -0.73
PRPF40B-208ENST00000548436 SMR3BP02814 79 aaPredicted RBP10.49□□□□□ -0.73
PRPF40B-208ENST00000548436 SPINK1P00995 79 aa10.48□□□□□ -0.73
PRPF40B-208ENST00000548436 PRR26Q8N8Z3 221 aa10.48□□□□□ -0.73
PRPF40B-208ENST00000548436 BRK1Q8WUW1 75 aa10.47□□□□□ -0.73
PRPF40B-208ENST00000548436 RETNLBQ9BQ08 111 aa10.47□□□□□ -0.73
PRPF40B-208ENST00000548436 PRO0628Q9UI54 55 aa10.47□□□□□ -0.73
PRPF40B-208ENST00000548436 FAM229AH3BQW9 127 aa10.46□□□□□ -0.74
PRPF40B-208ENST00000548436 V9GYY9 64 aa10.46□□□□□ -0.74
PRPF40B-208ENST00000548436 A8MUN3 132 aa10.44□□□□□ -0.74
PRPF40B-208ENST00000548436 HRES1P13985 223 aa10.44□□□□□ -0.74
PRPF40B-208ENST00000548436 APOBP04114 4563 aaKnown RBP10.41□□□□□ -0.74
PRPF40B-208ENST00000548436 LINC00304Q8N9R0 145 aa10.41□□□□□ -0.74
PRPF40B-208ENST00000548436 KRTAP10-4P60372 401 aaPredicted RBP10.38□□□□□ -0.75
PRPF40B-208ENST00000548436 FAT1Q14517 4588 aa10.38□□□□□ -0.75
PRPF40B-208ENST00000548436 IGKV2-30P06310 120 aa10.38□□□□□ -0.75
PRPF40B-208ENST00000548436 Q5VV11 94 aa10.37□□□□□ -0.75
PRPF40B-208ENST00000548436 RPS29P62273 56 aaKnown RBP10.35□□□□□ -0.75
PRPF40B-208ENST00000548436 SPAG11AQ6PDA7 123 aa10.34□□□□□ -0.75
PRPF40B-208ENST00000548436 PRR15LQ9BU68 103 aa10.34□□□□□ -0.75
PRPF40B-208ENST00000548436 PKHD1L1Q86WI1 4243 aa10.31□□□□□ -0.76
PRPF40B-208ENST00000548436 ACYP2P14621 99 aa10.29□□□□□ -0.76
PRPF40B-208ENST00000548436 DMAC1Q96GE9 116 aa10.29□□□□□ -0.76
PRPF40B-208ENST00000548436 IGKV2D-30A0A075B6S6 120 aa10.26□□□□□ -0.77
PRPF40B-208ENST00000548436 LINC01558Q9Y6Z2 57 aa10.26□□□□□ -0.77
PRPF40B-208ENST00000548436 CHKB-CPT1BH3BT56 60 aa10.24□□□□□ -0.77
PRPF40B-208ENST00000548436 Q75L30 129 aa10.22□□□□□ -0.77
PRPF40B-208ENST00000548436 A8MU10 97 aa10.19□□□□□ -0.78
PRPF40B-208ENST00000548436 EPPK1P58107 5090 aaKnown RBP10.16□□□□□ -0.78
PRPF40B-208ENST00000548436 C9orf92A6NGG3 77 aa10.16□□□□□ -0.78
PRPF40B-208ENST00000548436 A6NED7 52 aa10.11□□□□□ -0.79
PRPF40B-208ENST00000548436 C7orf65Q6ZTY9 151 aa10.1□□□□□ -0.79
PRPF40B-208ENST00000548436 C20orf166-AS1Q96NR2 134 aa10.1□□□□□ -0.79
PRPF40B-208ENST00000548436 A8MUU9 505 aa10.09□□□□□ -0.79
PRPF40B-208ENST00000548436 LCA10Q71F78 164 aa10.08□□□□□ -0.8
PRPF40B-208ENST00000548436 FLG2Q5D862 2391 aaPredicted RBP10.07□□□□□ -0.8
PRPF40B-208ENST00000548436 SPINK7P58062 85 aa10.04□□□□□ -0.8
PRPF40B-208ENST00000548436 HSPG2P98160 4391 aa10.03□□□□□ -0.8
PRPF40B-208ENST00000548436 TNXBP22105 4242 aa10.02□□□□□ -0.8
PRPF40B-208ENST00000548436 Q8N1X5 172 aa10.02□□□□□ -0.81
PRPF40B-208ENST00000548436 LRP1Q07954 4544 aaKnown RBP10.02□□□□□ -0.81
PRPF40B-208ENST00000548436 CDC42SE1Q9NRR8 79 aa9.99□□□□□ -0.81
PRPF40B-208ENST00000548436 Q5VSD8 79 aa9.98□□□□□ -0.81
PRPF40B-208ENST00000548436 KRTAP10-8P60410 259 aa9.97□□□□□ -0.81
PRPF40B-208ENST00000548436 BIRC6Q9NR09 4857 aa9.96□□□□□ -0.81
PRPF40B-208ENST00000548436 RYR1P21817 5038 aa9.95□□□□□ -0.82
PRPF40B-208ENST00000548436 FAT3Q8TDW7 4589 aa9.95□□□□□ -0.82
PRPF40B-208ENST00000548436 KIAA1109Q2LD37 5005 aa9.95□□□□□ -0.82
PRPF40B-208ENST00000548436 A0A1B0GU69 56 aa9.93□□□□□ -0.82
PRPF40B-208ENST00000548436 SPTSSBQ8NFR3 76 aa9.92□□□□□ -0.82
PRPF40B-208ENST00000548436 KRTAP17-1Q9BYP8 105 aa9.92□□□□□ -0.82
PRPF40B-208ENST00000548436 ATP11AUNQ6ZP68 121 aa9.91□□□□□ -0.82
PRPF40B-208ENST00000548436 PMAIP1Q13794 54 aa9.89□□□□□ -0.83
PRPF40B-208ENST00000548436 KRTAP3-1Q9BYR8 98 aa9.86□□□□□ -0.83
PRPF40B-208ENST00000548436 DMBT1Q9UGM3 2413 aaPredicted RBP9.8□□□□□ -0.84
PRPF40B-208ENST00000548436 A6NN06 94 aa9.76□□□□□ -0.85
PRPF40B-208ENST00000548436 HERC2O95714 4834 aa9.73□□□□□ -0.85
PRPF40B-208ENST00000548436 SPATA8Q6RVD6 105 aa9.73□□□□□ -0.85
PRPF40B-208ENST00000548436 UQCR11O14957 56 aa9.71□□□□□ -0.85
PRPF40B-208ENST00000548436 MT1HL1P0DM35 61 aa9.71□□□□□ -0.85
PRPF40B-208ENST00000548436 COX6B2Q6YFQ2 88 aa9.7□□□□□ -0.86
PRPF40B-208ENST00000548436 MYCBP2O75592 4640 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 250.5 ms