RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 SMIM26A0A096LP01 95 aa9.92□□□□□ -0.82
CHMP1A-204ENST00000547687 FAT3Q8TDW7 4589 aa9.91□□□□□ -0.82
CHMP1A-204ENST00000547687 RPL37AP61513 92 aaKnown RBP9.9□□□□□ -0.82
CHMP1A-204ENST00000547687 OCR1Q9BZK8 76 aa9.88□□□□□ -0.83
CHMP1A-204ENST00000547687 ANAPC11Q9NYG5 84 aa9.87□□□□□ -0.83
CHMP1A-204ENST00000547687 LINC00472Q9H8W2 130 aa9.86□□□□□ -0.83
CHMP1A-204ENST00000547687 FP248Q71RG6 208 aaPredicted RBP9.85□□□□□ -0.83
CHMP1A-204ENST00000547687 HCG22E2RYF7 251 aa9.84□□□□□ -0.83
CHMP1A-204ENST00000547687 KLKP1Q107X0 134 aa9.84□□□□□ -0.83
CHMP1A-204ENST00000547687 MOBPQ13875 183 aa9.84□□□□□ -0.83
CHMP1A-204ENST00000547687 SNURFQ9Y675 71 aa9.83□□□□□ -0.84
CHMP1A-204ENST00000547687 J3QL48 77 aa9.82□□□□□ -0.84
CHMP1A-204ENST00000547687 A8MWP4 228 aa9.8□□□□□ -0.84
CHMP1A-204ENST00000547687 TMEM254Q8TBM7 123 aa9.8□□□□□ -0.84
CHMP1A-204ENST00000547687 PRR15Q8IV56 129 aa9.79□□□□□ -0.84
CHMP1A-204ENST00000547687 H7BZZ5 65 aa9.78□□□□□ -0.84
CHMP1A-204ENST00000547687 BRK1Q8WUW1 75 aa9.78□□□□□ -0.84
CHMP1A-204ENST00000547687 WFDC13Q8IUB5 93 aa9.77□□□□□ -0.85
CHMP1A-204ENST00000547687 KRTAP29-1A8MX34 341 aaPredicted RBP9.77□□□□□ -0.85
CHMP1A-204ENST00000547687 ATP5EP56381 51 aaPredicted RBP9.76□□□□□ -0.85
CHMP1A-204ENST00000547687 A0A0U1RQV1 116 aa9.75□□□□□ -0.85
CHMP1A-204ENST00000547687 Q96NJ1 140 aa9.75□□□□□ -0.85
CHMP1A-204ENST00000547687 NDUFC1O43677 76 aa9.73□□□□□ -0.85
CHMP1A-204ENST00000547687 PMAIP1Q13794 54 aa9.73□□□□□ -0.85
CHMP1A-204ENST00000547687 NDUFB1O75438 58 aa9.72□□□□□ -0.85
CHMP1A-204ENST00000547687 CASC2Q6XLA1 102 aa9.72□□□□□ -0.85
CHMP1A-204ENST00000547687 CD164Q04900 197 aa9.72□□□□□ -0.85
CHMP1A-204ENST00000547687 SSBP3-AS1Q7Z2R9 100 aa9.7□□□□□ -0.86
CHMP1A-204ENST00000547687 TNXBP22105 4242 aa9.7□□□□□ -0.86
CHMP1A-204ENST00000547687 KRTAP1-4P0C5Y4 121 aa9.68□□□□□ -0.86
CHMP1A-204ENST00000547687 A0A087X002 238 aa9.67□□□□□ -0.86
CHMP1A-204ENST00000547687 SPINK6Q6UWN8 80 aa9.66□□□□□ -0.86
CHMP1A-204ENST00000547687 MMP24-AS1A0A0U1RRL7 71 aa9.66□□□□□ -0.86
CHMP1A-204ENST00000547687 HMCN2Q8NDA2 5059 aa9.64□□□□□ -0.87
CHMP1A-204ENST00000547687 MT1HL1P0DM35 61 aa9.63□□□□□ -0.87
CHMP1A-204ENST00000547687 FAM229BQ4G0N7 80 aa9.63□□□□□ -0.87
CHMP1A-204ENST00000547687 KRTAP13-2Q52LG2 175 aa9.63□□□□□ -0.87
CHMP1A-204ENST00000547687 hDV103S1A0JD37 113 aa9.62□□□□□ -0.87
CHMP1A-204ENST00000547687 A0A1B0GVX0 72 aa9.61□□□□□ -0.87
CHMP1A-204ENST00000547687 IGHV6-1A0A0B4J1U7 121 aa9.6□□□□□ -0.87
CHMP1A-204ENST00000547687 ZCCHC13Q8WW36 166 aaKnown RBP9.6□□□□□ -0.87
CHMP1A-204ENST00000547687 C8orf17Q9NRJ1 99 aa9.6□□□□□ -0.87
CHMP1A-204ENST00000547687 MP68P56378 58 aa9.59□□□□□ -0.87
CHMP1A-204ENST00000547687 ASB16-AS1Q495Z4 193 aa9.58□□□□□ -0.88
CHMP1A-204ENST00000547687 H0Y9P7 68 aa9.55□□□□□ -0.88
CHMP1A-204ENST00000547687 LINC00208Q96KT6 92 aa9.53□□□□□ -0.88
CHMP1A-204ENST00000547687 UBR4Q5T4S7 5183 aa9.52□□□□□ -0.89
CHMP1A-204ENST00000547687 PRR26Q8N8Z3 221 aa9.52□□□□□ -0.89
CHMP1A-204ENST00000547687 H3BPC8 53 aa9.51□□□□□ -0.89
CHMP1A-204ENST00000547687 NOTCH2NLQ7Z3S9 236 aa9.51□□□□□ -0.89
CHMP1A-204ENST00000547687 TYMSOSQ8TAI1 123 aa9.51□□□□□ -0.89
CHMP1A-204ENST00000547687 TP53AIP1Q9HCN2 124 aa9.51□□□□□ -0.89
CHMP1A-204ENST00000547687 MRPL34Q9BQ48 92 aaKnown RBP9.49□□□□□ -0.89
CHMP1A-204ENST00000547687 TRAV22A0A0B4J277 110 aa9.48□□□□□ -0.89
CHMP1A-204ENST00000547687 NDUFS5O43920 106 aa9.48□□□□□ -0.89
CHMP1A-204ENST00000547687 KRTAP10-8P60410 259 aa9.46□□□□□ -0.9
CHMP1A-204ENST00000547687 C1orf64Q8NEQ6 169 aa9.46□□□□□ -0.9
CHMP1A-204ENST00000547687 MPLKIPQ8TAP9 179 aa9.45□□□□□ -0.9
CHMP1A-204ENST00000547687 C4orf48Q5BLP8 95 aa9.44□□□□□ -0.9
CHMP1A-204ENST00000547687 LIMD2Q9BT23 127 aa9.43□□□□□ -0.9
CHMP1A-204ENST00000547687 C8orf87E5RJ46 101 aa9.43□□□□□ -0.9
CHMP1A-204ENST00000547687 Q1T7F1 81 aa9.43□□□□□ -0.9
CHMP1A-204ENST00000547687 LRP2P98164 4655 aa9.42□□□□□ -0.9
CHMP1A-204ENST00000547687 LINC00304Q8N9R0 145 aa9.39□□□□□ -0.91
CHMP1A-204ENST00000547687 LINC00313P59037 77 aa9.38□□□□□ -0.91
CHMP1A-204ENST00000547687 SPINK1P00995 79 aa9.38□□□□□ -0.91
CHMP1A-204ENST00000547687 PRR4Q16378 134 aa9.37□□□□□ -0.91
CHMP1A-204ENST00000547687 CYP4F30PQ9H0H9 118 aa9.36□□□□□ -0.91
CHMP1A-204ENST00000547687 KTN1-AS1Q86SY8 53 aa9.35□□□□□ -0.91
CHMP1A-204ENST00000547687 SPANXA2-OT1Q8N9U9 137 aa9.34□□□□□ -0.91
CHMP1A-204ENST00000547687 RBM12B-AS1Q9P1G2 102 aa9.34□□□□□ -0.91
CHMP1A-204ENST00000547687 SPAG11AQ6PDA7 123 aa9.34□□□□□ -0.91
CHMP1A-204ENST00000547687 LPAP08519 4548 aa9.32□□□□□ -0.92
CHMP1A-204ENST00000547687 Q5W150 140 aa9.31□□□□□ -0.92
CHMP1A-204ENST00000547687 RPS29P62273 56 aaKnown RBP9.3□□□□□ -0.92
CHMP1A-204ENST00000547687 PCOTHQ58A44 107 aa9.29□□□□□ -0.92
CHMP1A-204ENST00000547687 Q8N9P0 234 aaPredicted RBP9.28□□□□□ -0.92
CHMP1A-204ENST00000547687 RNF213Q63HN8 5207 aa9.28□□□□□ -0.92
CHMP1A-204ENST00000547687 KRTAP13-3Q3SY46 172 aa9.27□□□□□ -0.93
CHMP1A-204ENST00000547687 IGLV7-46A0A075B6I9 117 aa9.26□□□□□ -0.93
CHMP1A-204ENST00000547687 KRTAP16-1A8MUX0 517 aa9.26□□□□□ -0.93
CHMP1A-204ENST00000547687 LOC101927531A0A1B0GV80 90 aa9.25□□□□□ -0.93
CHMP1A-204ENST00000547687 RETNLBQ9BQ08 111 aa9.19□□□□□ -0.94
CHMP1A-204ENST00000547687 PSPHP1O15172 72 aa9.13□□□□□ -0.95
CHMP1A-204ENST00000547687 ATP11AUNQ6ZP68 121 aa9.13□□□□□ -0.95
CHMP1A-204ENST00000547687 COA5Q86WW8 74 aa9.11□□□□□ -0.95
CHMP1A-204ENST00000547687 IGKV2-30P06310 120 aa9.1□□□□□ -0.95
CHMP1A-204ENST00000547687 A6NN06 94 aa9.1□□□□□ -0.95
CHMP1A-204ENST00000547687 Q5VV11 94 aa9.1□□□□□ -0.95
CHMP1A-204ENST00000547687 A8MUN3 132 aa9.07□□□□□ -0.96
CHMP1A-204ENST00000547687 HRES1P13985 223 aa9.06□□□□□ -0.96
CHMP1A-204ENST00000547687 C7orf65Q6ZTY9 151 aa9.05□□□□□ -0.96
CHMP1A-204ENST00000547687 H3BS24 57 aa9.04□□□□□ -0.96
CHMP1A-204ENST00000547687 LCA10Q71F78 164 aa9.04□□□□□ -0.96
CHMP1A-204ENST00000547687 A8MU10 97 aa9.03□□□□□ -0.96
CHMP1A-204ENST00000547687 MUC2Q02817 5179 aa9.03□□□□□ -0.96
CHMP1A-204ENST00000547687 C9orf92A6NGG3 77 aa9.02□□□□□ -0.97
CHMP1A-204ENST00000547687 IGKV2D-30A0A075B6S6 120 aa9.02□□□□□ -0.97
CHMP1A-204ENST00000547687 ACYP2P14621 99 aa8.98□□□□□ -0.97
CHMP1A-204ENST00000547687 CHKB-CPT1BH3BT56 60 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms