RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 Q5VV11 94 aa9.37□□□□□ -0.91
LDLR-204ENST00000545707 TP53AIP1Q9HCN2 124 aa9.37□□□□□ -0.91
LDLR-204ENST00000545707 C1orf195Q5TG92 126 aa9.36□□□□□ -0.91
LDLR-204ENST00000545707 Q6ZR54 194 aa9.36□□□□□ -0.91
LDLR-204ENST00000545707 DNAH6Q9C0G6 4158 aa9.36□□□□□ -0.91
LDLR-204ENST00000545707 MRPL34Q9BQ48 92 aaKnown RBP9.35□□□□□ -0.91
LDLR-204ENST00000545707 V9GYY9 64 aa9.34□□□□□ -0.91
LDLR-204ENST00000545707 CIRBP-AS1Q8TBR5 109 aa9.33□□□□□ -0.92
LDLR-204ENST00000545707 PRR15LQ9BU68 103 aa9.33□□□□□ -0.92
LDLR-204ENST00000545707 ALMS1Q8TCU4 4167 aa9.31□□□□□ -0.92
LDLR-204ENST00000545707 CHKB-CPT1BH3BT56 60 aa9.3□□□□□ -0.92
LDLR-204ENST00000545707 IGLV7-43P04211 117 aa9.3□□□□□ -0.92
LDLR-204ENST00000545707 DNAH11Q96DT5 4516 aa9.29□□□□□ -0.92
LDLR-204ENST00000545707 C1orf134Q5TEV5 83 aa9.29□□□□□ -0.92
LDLR-204ENST00000545707 Q5W150 140 aa9.29□□□□□ -0.92
LDLR-204ENST00000545707 LIMD2Q9BT23 127 aa9.29□□□□□ -0.92
LDLR-204ENST00000545707 DNHD1Q96M86 4753 aa9.27□□□□□ -0.93
LDLR-204ENST00000545707 SPAG11AQ6PDA7 123 aa9.26□□□□□ -0.93
LDLR-204ENST00000545707 LY6G6CO95867 125 aa9.25□□□□□ -0.93
LDLR-204ENST00000545707 DNAH5Q8TE73 4624 aa9.25□□□□□ -0.93
LDLR-204ENST00000545707 HRES1P13985 223 aa9.24□□□□□ -0.93
LDLR-204ENST00000545707 KRTAP10-2P60368 255 aa9.22□□□□□ -0.93
LDLR-204ENST00000545707 LRP1BQ9NZR2 4599 aa9.2□□□□□ -0.94
LDLR-204ENST00000545707 RETNLBQ9BQ08 111 aa9.19□□□□□ -0.94
LDLR-204ENST00000545707 KRTAP13-3Q3SY46 172 aa9.17□□□□□ -0.94
LDLR-204ENST00000545707 LOC101927531A0A1B0GV80 90 aa9.17□□□□□ -0.94
LDLR-204ENST00000545707 A6NED7 52 aa9.17□□□□□ -0.94
LDLR-204ENST00000545707 LCA10Q71F78 164 aa9.17□□□□□ -0.94
LDLR-204ENST00000545707 Q75L30 129 aa9.16□□□□□ -0.94
LDLR-204ENST00000545707 PRR26Q8N8Z3 221 aa9.15□□□□□ -0.94
LDLR-204ENST00000545707 SPTSSBQ8NFR3 76 aa9.14□□□□□ -0.95
LDLR-204ENST00000545707 SSBP3-AS1Q7Z2R9 100 aa9.14□□□□□ -0.95
LDLR-204ENST00000545707 PMAIP1Q13794 54 aa9.13□□□□□ -0.95
LDLR-204ENST00000545707 KRTAP13-2Q52LG2 175 aa9.13□□□□□ -0.95
LDLR-204ENST00000545707 LINC01558Q9Y6Z2 57 aa9.12□□□□□ -0.95
LDLR-204ENST00000545707 HYDINQ4G0P3 5121 aa9.1□□□□□ -0.95
LDLR-204ENST00000545707 LINC00313P59037 77 aa9.1□□□□□ -0.95
LDLR-204ENST00000545707 PKD1P98161 4303 aa9.09□□□□□ -0.95
LDLR-204ENST00000545707 KRTAP10-1P60331 282 aa9.08□□□□□ -0.96
LDLR-204ENST00000545707 C8orf87E5RJ46 101 aa9.07□□□□□ -0.96
LDLR-204ENST00000545707 SPINK7P58062 85 aa9.07□□□□□ -0.96
LDLR-204ENST00000545707 VPS13BQ7Z7G8 4022 aa9.04□□□□□ -0.96
LDLR-204ENST00000545707 FAT2Q9NYQ8 4349 aa9.03□□□□□ -0.96
LDLR-204ENST00000545707 KRTAP21-3Q3LHN1 58 aa9.02□□□□□ -0.97
LDLR-204ENST00000545707 ACYP2P14621 99 aa9.01□□□□□ -0.97
LDLR-204ENST00000545707 CDC42SE1Q9NRR8 79 aa9.01□□□□□ -0.97
LDLR-204ENST00000545707 FAM229AH3BQW9 127 aa9□□□□□ -0.97
LDLR-204ENST00000545707 ATP11AUNQ6ZP68 121 aa9□□□□□ -0.97
LDLR-204ENST00000545707 Q6ZSA8 131 aa8.99□□□□□ -0.97
LDLR-204ENST00000545707 KRTAP1-4P0C5Y4 121 aa8.99□□□□□ -0.97
LDLR-204ENST00000545707 KRTAP16-1A8MUX0 517 aa8.97□□□□□ -0.97
LDLR-204ENST00000545707 DMAC1Q96GE9 116 aa8.96□□□□□ -0.97
LDLR-204ENST00000545707 IGKV2-30P06310 120 aa8.96□□□□□ -0.98
LDLR-204ENST00000545707 IGKV2D-30A0A075B6S6 120 aa8.94□□□□□ -0.98
LDLR-204ENST00000545707 SEC61GP60059 68 aa8.93□□□□□ -0.98
LDLR-204ENST00000545707 PLA2G1BP04054 148 aaKnown RBP8.92□□□□□ -0.98
LDLR-204ENST00000545707 A6NN06 94 aa8.91□□□□□ -0.98
LDLR-204ENST00000545707 PKHD1P08F94 4074 aa8.89□□□□□ -0.99
LDLR-204ENST00000545707 TYMSOSQ8TAI1 123 aa8.88□□□□□ -0.99
LDLR-204ENST00000545707 C4orf48Q5BLP8 95 aa8.87□□□□□ -0.99
LDLR-204ENST00000545707 KTN1-AS1Q86SY8 53 aa8.87□□□□□ -0.99
LDLR-204ENST00000545707 A0A1B0GU69 56 aa8.83□□□□□ -1
LDLR-204ENST00000545707 C7orf65Q6ZTY9 151 aa8.81□□□□□ -1
LDLR-204ENST00000545707 SPINK1P00995 79 aa8.78□□□□□ -1
LDLR-204ENST00000545707 SMR3BP02814 79 aaPredicted RBP8.76□□□□□ -1.01
LDLR-204ENST00000545707 Q8N1X5 172 aa8.75□□□□□ -1.01
LDLR-204ENST00000545707 FAT1Q14517 4588 aa8.73□□□□□ -1.01
LDLR-204ENST00000545707 LINC00304Q8N9R0 145 aa8.73□□□□□ -1.01
LDLR-204ENST00000545707 RBM12B-AS1Q9P1G2 102 aa8.73□□□□□ -1.01
LDLR-204ENST00000545707 DYNC1H1Q14204 4646 aaKnown RBP8.72□□□□□ -1.01
LDLR-204ENST00000545707 SACSQ9NZJ4 4579 aa8.71□□□□□ -1.01
LDLR-204ENST00000545707 C9orf92A6NGG3 77 aa8.69□□□□□ -1.02
LDLR-204ENST00000545707 SPATA8Q6RVD6 105 aa8.66□□□□□ -1.02
LDLR-204ENST00000545707 MIR22HGQ0VDD5 57 aa8.65□□□□□ -1.02
LDLR-204ENST00000545707 UQCR11O14957 56 aa8.64□□□□□ -1.03
LDLR-204ENST00000545707 ADM2Q7Z4H4 148 aa8.63□□□□□ -1.03
LDLR-204ENST00000545707 PRAC1Q96KF2 57 aa8.63□□□□□ -1.03
LDLR-204ENST00000545707 APOBP04114 4563 aaKnown RBP8.57□□□□□ -1.04
LDLR-204ENST00000545707 RPS29P62273 56 aaKnown RBP8.56□□□□□ -1.04
LDLR-204ENST00000545707 PKHD1L1Q86WI1 4243 aa8.53□□□□□ -1.04
LDLR-204ENST00000545707 KRTAP3-1Q9BYR8 98 aa8.52□□□□□ -1.05
LDLR-204ENST00000545707 A8MUU9 505 aa8.52□□□□□ -1.05
LDLR-204ENST00000545707 KRTAP10-4P60372 401 aaPredicted RBP8.51□□□□□ -1.05
LDLR-204ENST00000545707 C20orf166-AS1Q96NR2 134 aa8.51□□□□□ -1.05
LDLR-204ENST00000545707 A0A1B0GVY2 172 aa8.46□□□□□ -1.05
LDLR-204ENST00000545707 LRP1Q07954 4544 aaKnown RBP8.42□□□□□ -1.06
LDLR-204ENST00000545707 H0YAA0 97 aa8.41□□□□□ -1.06
LDLR-204ENST00000545707 KMT2CQ8NEZ4 4911 aaKnown RBP8.4□□□□□ -1.07
LDLR-204ENST00000545707 FLG2Q5D862 2391 aaPredicted RBP8.39□□□□□ -1.07
LDLR-204ENST00000545707 RYR2Q92736 4967 aa8.38□□□□□ -1.07
LDLR-204ENST00000545707 FAT3Q8TDW7 4589 aa8.35□□□□□ -1.07
LDLR-204ENST00000545707 A0A1B0GU33 70 aa8.34□□□□□ -1.07
LDLR-204ENST00000545707 CSAG1Q6PB30 78 aa8.32□□□□□ -1.08
LDLR-204ENST00000545707 HSPG2P98160 4391 aa8.3□□□□□ -1.08
LDLR-204ENST00000545707 MYCBP2O75592 4640 aa8.3□□□□□ -1.08
LDLR-204ENST00000545707 COX6B2Q6YFQ2 88 aa8.29□□□□□ -1.08
LDLR-204ENST00000545707 H1FX-AS1Q4G0G2 97 aa8.29□□□□□ -1.08
LDLR-204ENST00000545707 TNXBP22105 4242 aa8.28□□□□□ -1.08
LDLR-204ENST00000545707 DMBT1Q9UGM3 2413 aaPredicted RBP8.26□□□□□ -1.09
LDLR-204ENST00000545707 LINC01554Q52M75 96 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 164.7 ms