RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 RPS29P62273 56 aaKnown RBP5.93□□□□□ -1.46
PCDH9-204ENST00000544246 KRTAP4-16G5E9R7 235 aaPredicted RBP5.93□□□□□ -1.46
PCDH9-204ENST00000544246 NOTCH2NLQ7Z3S9 236 aa5.92□□□□□ -1.46
PCDH9-204ENST00000544246 APCP25054 2843 aa5.91□□□□□ -1.46
PCDH9-204ENST00000544246 FREM2Q5SZK8 3169 aa5.91□□□□□ -1.46
PCDH9-204ENST00000544246 CRYBG3Q68DQ2 2970 aa5.9□□□□□ -1.46
PCDH9-204ENST00000544246 KALRNO60229 2985 aa5.9□□□□□ -1.46
PCDH9-204ENST00000544246 ITPR1Q14643 2758 aa5.89□□□□□ -1.47
PCDH9-204ENST00000544246 CFAP47Q6ZTR5 3102 aa5.89□□□□□ -1.47
PCDH9-204ENST00000544246 DNAH14Q0VDD8 3507 aa5.88□□□□□ -1.47
PCDH9-204ENST00000544246 TACC2O95359 2948 aa5.87□□□□□ -1.47
PCDH9-204ENST00000544246 NSD1Q96L73 2696 aaPredicted RBP5.84□□□□□ -1.47
PCDH9-204ENST00000544246 ASH1LQ9NR48 2969 aaKnown RBP5.84□□□□□ -1.47
PCDH9-204ENST00000544246 PP632Q6XCG6 107 aa5.81□□□□□ -1.48
PCDH9-204ENST00000544246 KRTAP11-1Q8IUC1 163 aa5.81□□□□□ -1.48
PCDH9-204ENST00000544246 MYO15AQ9UKN7 3530 aa5.78□□□□□ -1.48
PCDH9-204ENST00000544246 ZZEF1O43149 2961 aa5.78□□□□□ -1.48
PCDH9-204ENST00000544246 ADGRG4Q8IZF6 3080 aa5.77□□□□□ -1.49
PCDH9-204ENST00000544246 SPEGQ15772 3267 aa5.76□□□□□ -1.49
PCDH9-204ENST00000544246 LRBAP50851 2863 aa5.74□□□□□ -1.49
PCDH9-204ENST00000544246 STAB2Q8WWQ8 2551 aa5.74□□□□□ -1.49
PCDH9-204ENST00000544246 KRTAP10-8P60410 259 aa5.73□□□□□ -1.49
PCDH9-204ENST00000544246 Q6ZRN7 208 aaPredicted RBP5.72□□□□□ -1.49
PCDH9-204ENST00000544246 KRTAP13-2Q52LG2 175 aa5.72□□□□□ -1.49
PCDH9-204ENST00000544246 CELSR2Q9HCU4 2923 aa5.71□□□□□ -1.5
PCDH9-204ENST00000544246 NIPBLQ6KC79 2804 aaeCLIP5.69□□□□□ -1.5
PCDH9-204ENST00000544246 LOC400499M0QZD8 3231 aa5.69□□□□□ -1.5
PCDH9-204ENST00000544246 DCHS1Q96JQ0 3298 aa5.68□□□□□ -1.5
PCDH9-204ENST00000544246 MUC3AQ02505 3323 aa5.68□□□□□ -1.5
PCDH9-204ENST00000544246 FLG2Q5D862 2391 aaPredicted RBP5.64□□□□□ -1.51
PCDH9-204ENST00000544246 P0C880 135 aa5.63□□□□□ -1.51
PCDH9-204ENST00000544246 KRTAP13-1Q8IUC0 172 aa5.63□□□□□ -1.51
PCDH9-204ENST00000544246 KRTAP7-1Q8IUC3 87 aa5.62□□□□□ -1.51
PCDH9-204ENST00000544246 NBEAL2Q6ZNJ1 2754 aa5.59□□□□□ -1.51
PCDH9-204ENST00000544246 A0A1B0GVY2 172 aa5.59□□□□□ -1.51
PCDH9-204ENST00000544246 NBPF19A0A087WUL8 3843 aa5.57□□□□□ -1.52
PCDH9-204ENST00000544246 ZANQ9Y493 2812 aa5.57□□□□□ -1.52
PCDH9-204ENST00000544246 PRO2289Q9P1D8 64 aa5.56□□□□□ -1.52
PCDH9-204ENST00000544246 DMBT1Q9UGM3 2413 aaPredicted RBP5.53□□□□□ -1.52
PCDH9-204ENST00000544246 RELNP78509 3460 aa5.52□□□□□ -1.53
PCDH9-204ENST00000544246 NF1P21359 2839 aa5.52□□□□□ -1.53
PCDH9-204ENST00000544246 H0YAA0 97 aa5.51□□□□□ -1.53
PCDH9-204ENST00000544246 HRNRQ86YZ3 2850 aaPredicted RBP5.51□□□□□ -1.53
PCDH9-204ENST00000544246 PDZD2O15018 2839 aa5.5□□□□□ -1.53
PCDH9-204ENST00000544246 XP32Q5T750 250 aa5.5□□□□□ -1.53
PCDH9-204ENST00000544246 LAMA5O15230 3695 aa5.5□□□□□ -1.53
PCDH9-204ENST00000544246 MXRA5Q9NR99 2828 aa5.49□□□□□ -1.53
PCDH9-204ENST00000544246 DCHS2Q6V1P9 2916 aa5.49□□□□□ -1.53
PCDH9-204ENST00000544246 KRTAP10-10P60014 251 aa5.49□□□□□ -1.53
PCDH9-204ENST00000544246 FBN2P35556 2912 aa5.49□□□□□ -1.53
PCDH9-204ENST00000544246 DMDP11532 3685 aa5.48□□□□□ -1.53
PCDH9-204ENST00000544246 ASPMQ8IZT6 3477 aa5.44□□□□□ -1.54
PCDH9-204ENST00000544246 OTOGQ6ZRI0 2925 aa5.44□□□□□ -1.54
PCDH9-204ENST00000544246 ZFHX3Q15911 3703 aa5.44□□□□□ -1.54
PCDH9-204ENST00000544246 TENM2Q9NT68 2774 aa5.4□□□□□ -1.54
PCDH9-204ENST00000544246 TPRXLQ17RH7 258 aa5.37□□□□□ -1.55
PCDH9-204ENST00000544246 SMG1Q96Q15 3661 aaKnown RBP5.35□□□□□ -1.55
PCDH9-204ENST00000544246 TENM1Q9UKZ4 2725 aa5.33□□□□□ -1.56
PCDH9-204ENST00000544246 KRTAP1-4P0C5Y4 121 aa5.33□□□□□ -1.56
PCDH9-204ENST00000544246 CELSR1Q9NYQ6 3014 aa5.29□□□□□ -1.56
PCDH9-204ENST00000544246 WDFY3Q8IZQ1 3526 aa5.28□□□□□ -1.56
PCDH9-204ENST00000544246 PKD1L1Q8TDX9 2849 aa5.28□□□□□ -1.56
PCDH9-204ENST00000544246 TENM3Q9P273 2699 aa5.27□□□□□ -1.57
PCDH9-204ENST00000544246 KRTAP12-2P59991 146 aa5.26□□□□□ -1.57
PCDH9-204ENST00000544246 FBN1P35555 2871 aaKnown RBP5.25□□□□□ -1.57
PCDH9-204ENST00000544246 KRTAP13-3Q3SY46 172 aa5.22□□□□□ -1.57
PCDH9-204ENST00000544246 ZFHX4Q86UP3 3567 aa5.21□□□□□ -1.58
PCDH9-204ENST00000544246 KRTAP13-4Q3LI77 160 aa5.2□□□□□ -1.58
PCDH9-204ENST00000544246 FBN3Q75N90 2809 aa5.18□□□□□ -1.58
PCDH9-204ENST00000544246 TGP01266 2768 aa5.17□□□□□ -1.58
PCDH9-204ENST00000544246 ANK3Q12955 4377 aaKnown RBP5.17□□□□□ -1.58
PCDH9-204ENST00000544246 CSMD1Q96PZ7 3565 aa5.17□□□□□ -1.58
PCDH9-204ENST00000544246 CSMD2Q7Z408 3487 aa5.15□□□□□ -1.59
PCDH9-204ENST00000544246 KRTAP15-1Q3LI76 137 aa5.14□□□□□ -1.59
PCDH9-204ENST00000544246 VWFP04275 2813 aa5.11□□□□□ -1.59
PCDH9-204ENST00000544246 BSNQ9UPA5 3926 aa5.09□□□□□ -1.59
PCDH9-204ENST00000544246 SPENQ96T58 3664 aaKnown RBP5.06□□□□□ -1.6
PCDH9-204ENST00000544246 KRTAP12-1P59990 96 aa5.05□□□□□ -1.6
PCDH9-204ENST00000544246 INE1O15225 51 aa5.02□□□□□ -1.61
PCDH9-204ENST00000544246 TRRAPQ9Y4A5 3859 aa4.93□□□□□ -1.62
PCDH9-204ENST00000544246 AKAP9Q99996 3911 aa4.88□□□□□ -1.63
PCDH9-204ENST00000544246 CRCT1Q9UGL9 99 aa4.87□□□□□ -1.63
PCDH9-204ENST00000544246 KRTAP4-5Q9BYR2 181 aa4.86□□□□□ -1.63
PCDH9-204ENST00000544246 COL7A1Q02388 2944 aa4.86□□□□□ -1.63
PCDH9-204ENST00000544246 KRTAP3-1Q9BYR8 98 aa4.81□□□□□ -1.64
PCDH9-204ENST00000544246 SVEP1Q4LDE5 3571 aa4.8□□□□□ -1.64
PCDH9-204ENST00000544246 SRRM2Q9UQ35 2752 aaKnown RBP4.78□□□□□ -1.64
PCDH9-204ENST00000544246 KRTAP10-12P60413 245 aa4.76□□□□□ -1.65
PCDH9-204ENST00000544246 ZNF469Q96JG9 3925 aaPredicted RBP4.75□□□□□ -1.65
PCDH9-204ENST00000544246 HUWE1Q7Z6Z7 4374 aaKnown RBP4.75□□□□□ -1.65
PCDH9-204ENST00000544246 ALMS1Q8TCU4 4167 aa4.74□□□□□ -1.65
PCDH9-204ENST00000544246 KRTAP10-6P60371 365 aaPredicted RBP4.73□□□□□ -1.65
PCDH9-204ENST00000544246 MT1HL1P0DM35 61 aa4.71□□□□□ -1.66
PCDH9-204ENST00000544246 MEGF8Q7Z7M0 2845 aa4.69□□□□□ -1.66
PCDH9-204ENST00000544246 DNHD1Q96M86 4753 aa4.66□□□□□ -1.66
PCDH9-204ENST00000544246 DNAH9Q9NYC9 4486 aa4.64□□□□□ -1.67
PCDH9-204ENST00000544246 VPS13CQ709C8 3753 aa4.63□□□□□ -1.67
PCDH9-204ENST00000544246 CUBNO60494 3623 aa4.62□□□□□ -1.67
PCDH9-204ENST00000544246 KRTAP12-3P60328 96 aa4.61□□□□□ -1.67
PCDH9-204ENST00000544246 KRTAP10-4P60372 401 aaPredicted RBP4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms