RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 KRTAP13-2Q52LG2 175 aa9.55□□□□□ -0.88
COL4A1-204ENST00000543140 PRR4Q16378 134 aa9.54□□□□□ -0.88
COL4A1-204ENST00000543140 PKHD1P08F94 4074 aa9.52□□□□□ -0.89
COL4A1-204ENST00000543140 CD164Q04900 197 aa9.52□□□□□ -0.89
COL4A1-204ENST00000543140 ASB16-AS1Q495Z4 193 aa9.52□□□□□ -0.89
COL4A1-204ENST00000543140 NDUFS5O43920 106 aa9.51□□□□□ -0.89
COL4A1-204ENST00000543140 VPS13BQ7Z7G8 4022 aa9.5□□□□□ -0.89
COL4A1-204ENST00000543140 KRTAP1-4P0C5Y4 121 aa9.49□□□□□ -0.89
COL4A1-204ENST00000543140 TRAV22A0A0B4J277 110 aa9.49□□□□□ -0.89
COL4A1-204ENST00000543140 C1orf64Q8NEQ6 169 aa9.48□□□□□ -0.89
COL4A1-204ENST00000543140 SACSQ9NZJ4 4579 aa9.48□□□□□ -0.89
COL4A1-204ENST00000543140 MRPL34Q9BQ48 92 aaKnown RBP9.46□□□□□ -0.9
COL4A1-204ENST00000543140 PLA2G1BP04054 148 aaKnown RBP9.45□□□□□ -0.9
COL4A1-204ENST00000543140 H3BPC8 53 aa9.44□□□□□ -0.9
COL4A1-204ENST00000543140 SMR3BP02814 79 aaPredicted RBP9.44□□□□□ -0.9
COL4A1-204ENST00000543140 TP53AIP1Q9HCN2 124 aa9.44□□□□□ -0.9
COL4A1-204ENST00000543140 BRK1Q8WUW1 75 aa9.41□□□□□ -0.9
COL4A1-204ENST00000543140 C1orf195Q5TG92 126 aa9.4□□□□□ -0.9
COL4A1-204ENST00000543140 A0A1B0GVY2 172 aa9.38□□□□□ -0.91
COL4A1-204ENST00000543140 TYMSOSQ8TAI1 123 aa9.38□□□□□ -0.91
COL4A1-204ENST00000543140 PCOTHQ58A44 107 aa9.37□□□□□ -0.91
COL4A1-204ENST00000543140 PRO0628Q9UI54 55 aa9.36□□□□□ -0.91
COL4A1-204ENST00000543140 CYP4F30PQ9H0H9 118 aa9.35□□□□□ -0.91
COL4A1-204ENST00000543140 C4orf48Q5BLP8 95 aa9.34□□□□□ -0.91
COL4A1-204ENST00000543140 LINC00313P59037 77 aa9.33□□□□□ -0.92
COL4A1-204ENST00000543140 Q5W150 140 aa9.33□□□□□ -0.92
COL4A1-204ENST00000543140 PRR26Q8N8Z3 221 aa9.33□□□□□ -0.92
COL4A1-204ENST00000543140 C8orf87E5RJ46 101 aa9.32□□□□□ -0.92
COL4A1-204ENST00000543140 LIMD2Q9BT23 127 aa9.32□□□□□ -0.92
COL4A1-204ENST00000543140 DYNC1H1Q14204 4646 aaKnown RBP9.32□□□□□ -0.92
COL4A1-204ENST00000543140 SPANXA2-OT1Q8N9U9 137 aa9.31□□□□□ -0.92
COL4A1-204ENST00000543140 PSPHP1O15172 72 aa9.3□□□□□ -0.92
COL4A1-204ENST00000543140 SPINK1P00995 79 aa9.26□□□□□ -0.93
COL4A1-204ENST00000543140 RETNLBQ9BQ08 111 aa9.26□□□□□ -0.93
COL4A1-204ENST00000543140 KMT2CQ8NEZ4 4911 aaKnown RBP9.26□□□□□ -0.93
COL4A1-204ENST00000543140 KRTAP13-3Q3SY46 172 aa9.25□□□□□ -0.93
COL4A1-204ENST00000543140 IGLV7-46A0A075B6I9 117 aa9.24□□□□□ -0.93
COL4A1-204ENST00000543140 LINC00304Q8N9R0 145 aa9.24□□□□□ -0.93
COL4A1-204ENST00000543140 RYR2Q92736 4967 aa9.24□□□□□ -0.93
COL4A1-204ENST00000543140 KRTAP10-4P60372 401 aaPredicted RBP9.22□□□□□ -0.93
COL4A1-204ENST00000543140 FAT1Q14517 4588 aa9.22□□□□□ -0.93
COL4A1-204ENST00000543140 Q8N9P0 234 aaPredicted RBP9.21□□□□□ -0.94
COL4A1-204ENST00000543140 KRTAP16-1A8MUX0 517 aa9.21□□□□□ -0.94
COL4A1-204ENST00000543140 LOC101927531A0A1B0GV80 90 aa9.2□□□□□ -0.94
COL4A1-204ENST00000543140 APOBP04114 4563 aaKnown RBP9.19□□□□□ -0.94
COL4A1-204ENST00000543140 Q1T7F1 81 aa9.19□□□□□ -0.94
COL4A1-204ENST00000543140 A8MU10 97 aa9.17□□□□□ -0.94
COL4A1-204ENST00000543140 A8MUN3 132 aa9.17□□□□□ -0.94
COL4A1-204ENST00000543140 FAM229AH3BQW9 127 aa9.16□□□□□ -0.94
COL4A1-204ENST00000543140 COA5Q86WW8 74 aa9.15□□□□□ -0.94
COL4A1-204ENST00000543140 SPAG11AQ6PDA7 123 aa9.14□□□□□ -0.95
COL4A1-204ENST00000543140 RPS29P62273 56 aaKnown RBP9.1□□□□□ -0.95
COL4A1-204ENST00000543140 HRES1P13985 223 aa9.07□□□□□ -0.96
COL4A1-204ENST00000543140 IGKV2-30P06310 120 aa9.06□□□□□ -0.96
COL4A1-204ENST00000543140 Q5VV11 94 aa9.06□□□□□ -0.96
COL4A1-204ENST00000543140 IGKV2D-30A0A075B6S6 120 aa9.05□□□□□ -0.96
COL4A1-204ENST00000543140 C9orf92A6NGG3 77 aa9.03□□□□□ -0.96
COL4A1-204ENST00000543140 PRR15LQ9BU68 103 aa9.03□□□□□ -0.96
COL4A1-204ENST00000543140 CHKB-CPT1BH3BT56 60 aa9□□□□□ -0.97
COL4A1-204ENST00000543140 V9GYY9 64 aa9□□□□□ -0.97
COL4A1-204ENST00000543140 PKHD1L1Q86WI1 4243 aa8.98□□□□□ -0.97
COL4A1-204ENST00000543140 Q5VSD8 79 aa8.97□□□□□ -0.97
COL4A1-204ENST00000543140 FLG2Q5D862 2391 aaPredicted RBP8.97□□□□□ -0.97
COL4A1-204ENST00000543140 RYR3Q15413 4870 aa8.97□□□□□ -0.97
COL4A1-204ENST00000543140 ACYP2P14621 99 aa8.95□□□□□ -0.98
COL4A1-204ENST00000543140 DMAC1Q96GE9 116 aa8.94□□□□□ -0.98
COL4A1-204ENST00000543140 Q8N1X5 172 aa8.93□□□□□ -0.98
COL4A1-204ENST00000543140 LRP1Q07954 4544 aaKnown RBP8.92□□□□□ -0.98
COL4A1-204ENST00000543140 KRTAP17-1Q9BYP8 105 aa8.9□□□□□ -0.98
COL4A1-204ENST00000543140 HSPG2P98160 4391 aa8.9□□□□□ -0.99
COL4A1-204ENST00000543140 LCA10Q71F78 164 aa8.88□□□□□ -0.99
COL4A1-204ENST00000543140 SPTSSBQ8NFR3 76 aa8.88□□□□□ -0.99
COL4A1-204ENST00000543140 A6NED7 52 aa8.87□□□□□ -0.99
COL4A1-204ENST00000543140 A8MUU9 505 aa8.87□□□□□ -0.99
COL4A1-204ENST00000543140 C7orf65Q6ZTY9 151 aa8.87□□□□□ -0.99
COL4A1-204ENST00000543140 C20orf166-AS1Q96NR2 134 aa8.87□□□□□ -0.99
COL4A1-204ENST00000543140 DMBT1Q9UGM3 2413 aaPredicted RBP8.86□□□□□ -0.99
COL4A1-204ENST00000543140 KRTAP10-8P60410 259 aa8.86□□□□□ -0.99
COL4A1-204ENST00000543140 LINC01558Q9Y6Z2 57 aa8.85□□□□□ -0.99
COL4A1-204ENST00000543140 PMAIP1Q13794 54 aa8.84□□□□□ -0.99
COL4A1-204ENST00000543140 Q75L30 129 aa8.82□□□□□ -1
COL4A1-204ENST00000543140 TNXBP22105 4242 aa8.8□□□□□ -1
COL4A1-204ENST00000543140 SPINK7P58062 85 aa8.79□□□□□ -1
COL4A1-204ENST00000543140 RYR1P21817 5038 aa8.78□□□□□ -1
COL4A1-204ENST00000543140 KIAA1109Q2LD37 5005 aa8.78□□□□□ -1
COL4A1-204ENST00000543140 FAT3Q8TDW7 4589 aa8.72□□□□□ -1.01
COL4A1-204ENST00000543140 MYCBP2O75592 4640 aa8.7□□□□□ -1.02
COL4A1-204ENST00000543140 SEC61GP60059 68 aa8.69□□□□□ -1.02
COL4A1-204ENST00000543140 CDC42SE1Q9NRR8 79 aa8.68□□□□□ -1.02
COL4A1-204ENST00000543140 MT1HL1P0DM35 61 aa8.67□□□□□ -1.02
COL4A1-204ENST00000543140 EPPK1P58107 5090 aaKnown RBP8.66□□□□□ -1.02
COL4A1-204ENST00000543140 ATP11AUNQ6ZP68 121 aa8.65□□□□□ -1.02
COL4A1-204ENST00000543140 A0A1B0GU69 56 aa8.64□□□□□ -1.03
COL4A1-204ENST00000543140 KRTAP3-1Q9BYR8 98 aa8.63□□□□□ -1.03
COL4A1-204ENST00000543140 A6NN06 94 aa8.62□□□□□ -1.03
COL4A1-204ENST00000543140 XP32Q5T750 250 aa8.59□□□□□ -1.03
COL4A1-204ENST00000543140 KTN1-AS1Q86SY8 53 aa8.58□□□□□ -1.04
COL4A1-204ENST00000543140 RPL37P61927 97 aaKnown RBP8.57□□□□□ -1.04
COL4A1-204ENST00000543140 KRTAP4-5Q9BYR2 181 aa8.54□□□□□ -1.04
COL4A1-204ENST00000543140 COX6B2Q6YFQ2 88 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms