RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 Q8N9P0 234 aaPredicted RBP8.51□□□□□ -1.05
CLSTN3-214ENST00000542663 LINC00472Q9H8W2 130 aa8.51□□□□□ -1.05
CLSTN3-214ENST00000542663 IGHV6-1A0A0B4J1U7 121 aa8.5□□□□□ -1.05
CLSTN3-214ENST00000542663 COX6CP09669 75 aa8.5□□□□□ -1.05
CLSTN3-214ENST00000542663 TRBV7-4A0A0J9YYF1 115 aa8.49□□□□□ -1.05
CLSTN3-214ENST00000542663 DNAL4O96015 105 aa8.49□□□□□ -1.05
CLSTN3-214ENST00000542663 SMIM6P0DI80 62 aa8.47□□□□□ -1.05
CLSTN3-214ENST00000542663 SPINK7P58062 85 aa8.47□□□□□ -1.05
CLSTN3-214ENST00000542663 ORMDL1Q9P0S3 153 aa8.47□□□□□ -1.05
CLSTN3-214ENST00000542663 ZCCHC13Q8WW36 166 aaKnown RBP8.46□□□□□ -1.06
CLSTN3-214ENST00000542663 ANKRD29Q8N6D5 301 aa8.44□□□□□ -1.06
CLSTN3-214ENST00000542663 H3BQ85 93 aa8.43□□□□□ -1.06
CLSTN3-214ENST00000542663 A0A1B0GV72 72 aa8.42□□□□□ -1.06
CLSTN3-214ENST00000542663 M0R143 59 aa8.42□□□□□ -1.06
CLSTN3-214ENST00000542663 TRACP01848 142 aa8.41□□□□□ -1.06
CLSTN3-214ENST00000542663 SCGB1C2P0DMR2 95 aa8.41□□□□□ -1.06
CLSTN3-214ENST00000542663 A0A1B0GVX0 72 aa8.4□□□□□ -1.06
CLSTN3-214ENST00000542663 C8orf87E5RJ46 101 aa8.4□□□□□ -1.06
CLSTN3-214ENST00000542663 TMEM256-PLSCR3K7ERE1 68 aa8.4□□□□□ -1.06
CLSTN3-214ENST00000542663 WFDC13Q8IUB5 93 aa8.38□□□□□ -1.07
CLSTN3-214ENST00000542663 NEBP20929 6669 aa8.38□□□□□ -1.07
CLSTN3-214ENST00000542663 CCKP06307 115 aa8.37□□□□□ -1.07
CLSTN3-214ENST00000542663 UBE2V1Q13404 147 aa8.36□□□□□ -1.07
CLSTN3-214ENST00000542663 TSTD3H0UI37 97 aa8.34□□□□□ -1.07
CLSTN3-214ENST00000542663 NAA38Q9BRA0 125 aaKnown RBP8.34□□□□□ -1.07
CLSTN3-214ENST00000542663 MUC12Q9UKN1 5478 aa8.33□□□□□ -1.08
CLSTN3-214ENST00000542663 LOC105371267A0A1B0GV96 52 aa8.32□□□□□ -1.08
CLSTN3-214ENST00000542663 BAALC-AS2P0C853 105 aa8.29□□□□□ -1.08
CLSTN3-214ENST00000542663 ATXN8Q156A1 80 aa8.29□□□□□ -1.08
CLSTN3-214ENST00000542663 RBM3P98179 157 aaKnown RBP8.28□□□□□ -1.08
CLSTN3-214ENST00000542663 BATFQ16520 125 aa8.28□□□□□ -1.08
CLSTN3-214ENST00000542663 VPS25Q9BRG1 176 aa8.27□□□□□ -1.09
CLSTN3-214ENST00000542663 DSCR8Q96T75 97 aa8.26□□□□□ -1.09
CLSTN3-214ENST00000542663 KRTAP20-1Q3LI63 56 aa8.25□□□□□ -1.09
CLSTN3-214ENST00000542663 LYRM7Q5U5X0 104 aa8.25□□□□□ -1.09
CLSTN3-214ENST00000542663 J3KT08 172 aa8.22□□□□□ -1.09
CLSTN3-214ENST00000542663 H1FX-AS1Q4G0G2 97 aa8.22□□□□□ -1.09
CLSTN3-214ENST00000542663 C9JAW5 83 aa8.21□□□□□ -1.1
CLSTN3-214ENST00000542663 C8orf17Q9NRJ1 99 aa8.19□□□□□ -1.1
CLSTN3-214ENST00000542663 JMJD7-PLA2G4BH0Y9G9 81 aa8.18□□□□□ -1.1
CLSTN3-214ENST00000542663 A6NN06 94 aa8.17□□□□□ -1.1
CLSTN3-214ENST00000542663 C9orf118A6NHY6 69 aa8.16□□□□□ -1.1
CLSTN3-214ENST00000542663 NDUFB1O75438 58 aa8.16□□□□□ -1.1
CLSTN3-214ENST00000542663 C21orf62-AS1Q17RA5 79 aa8.16□□□□□ -1.1
CLSTN3-214ENST00000542663 LOC110117498A0A087WWA1 95 aa8.15□□□□□ -1.1
CLSTN3-214ENST00000542663 IGKV3D-7A0A0C4DH55 119 aa8.15□□□□□ -1.1
CLSTN3-214ENST00000542663 TAX1BP3O14907 124 aa8.15□□□□□ -1.1
CLSTN3-214ENST00000542663 Q6ZQT0 140 aa8.15□□□□□ -1.1
CLSTN3-214ENST00000542663 MT1BP07438 61 aa8.14□□□□□ -1.11
CLSTN3-214ENST00000542663 C14orf132Q9NPU4 83 aa8.13□□□□□ -1.11
CLSTN3-214ENST00000542663 A0A1W2PPM0 123 aa8.12□□□□□ -1.11
CLSTN3-214ENST00000542663 PDE6GP18545 87 aa8.12□□□□□ -1.11
CLSTN3-214ENST00000542663 Q6ZVQ6 151 aa8.11□□□□□ -1.11
CLSTN3-214ENST00000542663 KRTAP5-9P26371 169 aa8.1□□□□□ -1.11
CLSTN3-214ENST00000542663 A0A1B0GW54 56 aa8.09□□□□□ -1.11
CLSTN3-214ENST00000542663 H3BT86 120 aa8.08□□□□□ -1.12
CLSTN3-214ENST00000542663 KRTAP10-5P60370 271 aa8.03□□□□□ -1.12
CLSTN3-214ENST00000542663 KRTAP19-8Q3LI54 63 aa8.03□□□□□ -1.12
CLSTN3-214ENST00000542663 Q5VV11 94 aa8.03□□□□□ -1.12
CLSTN3-214ENST00000542663 SPCS1Q9Y6A9 102 aa8.03□□□□□ -1.12
CLSTN3-214ENST00000542663 MMP24-AS1A0A0U1RRL7 71 aa8.01□□□□□ -1.13
CLSTN3-214ENST00000542663 PRR15Q8IV56 129 aa8.01□□□□□ -1.13
CLSTN3-214ENST00000542663 TMEM254Q8TBM7 123 aa8.01□□□□□ -1.13
CLSTN3-214ENST00000542663 MRPL34Q9BQ48 92 aaKnown RBP8.01□□□□□ -1.13
CLSTN3-214ENST00000542663 KMT2DO14686 5537 aa8.01□□□□□ -1.13
CLSTN3-214ENST00000542663 COL5A1-AS1Q5SY13 56 aa7.99□□□□□ -1.13
CLSTN3-214ENST00000542663 SPRR2GQ9BYE4 73 aa7.99□□□□□ -1.13
CLSTN3-214ENST00000542663 NREPQ16612 68 aa7.98□□□□□ -1.13
CLSTN3-214ENST00000542663 MDN1Q9NU22 5596 aa7.97□□□□□ -1.13
CLSTN3-214ENST00000542663 IGKV2D-30A0A075B6S6 120 aa7.97□□□□□ -1.13
CLSTN3-214ENST00000542663 FAM236AA0A1B0GUQ0 79 aa7.97□□□□□ -1.13
CLSTN3-214ENST00000542663 FAM236BA0A1B0GV22 79 aa7.97□□□□□ -1.13
CLSTN3-214ENST00000542663 IGKV2-30P06310 120 aa7.97□□□□□ -1.13
CLSTN3-214ENST00000542663 SMCPP49901 116 aaPredicted RBP7.94□□□□□ -1.14
CLSTN3-214ENST00000542663 C5orf47Q569G3 176 aa7.94□□□□□ -1.14
CLSTN3-214ENST00000542663 Q5W150 140 aa7.94□□□□□ -1.14
CLSTN3-214ENST00000542663 C7orf65Q6ZTY9 151 aa7.94□□□□□ -1.14
CLSTN3-214ENST00000542663 NDUFS5O43920 106 aa7.93□□□□□ -1.14
CLSTN3-214ENST00000542663 hDV103S1A0JD37 113 aa7.91□□□□□ -1.14
CLSTN3-214ENST00000542663 K7EP34 96 aa7.91□□□□□ -1.14
CLSTN3-214ENST00000542663 KRTAP2-3P0C7H8 128 aa7.91□□□□□ -1.14
CLSTN3-214ENST00000542663 C4orf26Q17RF5 130 aa7.91□□□□□ -1.14
CLSTN3-214ENST00000542663 KRTAP2-4Q9BYR9 128 aa7.91□□□□□ -1.14
CLSTN3-214ENST00000542663 PRO0461Q9UI25 63 aa7.9□□□□□ -1.14
CLSTN3-214ENST00000542663 PCP4L1A6NKN8 68 aa7.88□□□□□ -1.15
CLSTN3-214ENST00000542663 K7EQZ3 153 aa7.88□□□□□ -1.15
CLSTN3-214ENST00000542663 BPY2O14599 106 aa7.86□□□□□ -1.15
CLSTN3-214ENST00000542663 KRTAP3-1Q9BYR8 98 aa7.83□□□□□ -1.16
CLSTN3-214ENST00000542663 GTF2H5Q6ZYL4 71 aa7.82□□□□□ -1.16
CLSTN3-214ENST00000542663 S4R3F8 94 aa7.8□□□□□ -1.16
CLSTN3-214ENST00000542663 CSAG1Q6PB30 78 aa7.79□□□□□ -1.16
CLSTN3-214ENST00000542663 Q8N9L7 120 aa7.79□□□□□ -1.16
CLSTN3-214ENST00000542663 LCA10Q71F78 164 aa7.78□□□□□ -1.16
CLSTN3-214ENST00000542663 KLKP1Q107X0 134 aa7.77□□□□□ -1.17
CLSTN3-214ENST00000542663 UBL5Q9BZL1 73 aa7.76□□□□□ -1.17
CLSTN3-214ENST00000542663 HCG22E2RYF7 251 aa7.73□□□□□ -1.17
CLSTN3-214ENST00000542663 F8W1H4 67 aa7.73□□□□□ -1.17
CLSTN3-214ENST00000542663 CASC2Q6XLA1 102 aa7.73□□□□□ -1.17
CLSTN3-214ENST00000542663 SPRR2EP22531 72 aa7.72□□□□□ -1.17
CLSTN3-214ENST00000542663 SPRR2BP35325 72 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms