RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 RETNLBQ9BQ08 111 aa5.31□□□□□ -1.56
DDX55-208ENST00000541259 KRTAP4-9Q9BYQ8 210 aa5.31□□□□□ -1.56
DDX55-208ENST00000541259 RPS29P62273 56 aaKnown RBP5.3□□□□□ -1.56
DDX55-208ENST00000541259 KRTAP15-1Q3LI76 137 aa5.3□□□□□ -1.56
DDX55-208ENST00000541259 Q5XG85 94 aa5.29□□□□□ -1.56
DDX55-208ENST00000541259 LIMD2Q9BT23 127 aa5.29□□□□□ -1.56
DDX55-208ENST00000541259 C1orf195Q5TG92 126 aa5.27□□□□□ -1.57
DDX55-208ENST00000541259 ASB16-AS1Q495Z4 193 aa5.26□□□□□ -1.57
DDX55-208ENST00000541259 Q96NJ1 140 aa5.26□□□□□ -1.57
DDX55-208ENST00000541259 SS18L2Q9UHA2 77 aa5.26□□□□□ -1.57
DDX55-208ENST00000541259 A0A1B0GW54 56 aa5.25□□□□□ -1.57
DDX55-208ENST00000541259 DEFB116Q30KQ4 102 aa5.25□□□□□ -1.57
DDX55-208ENST00000541259 LINC00846Q9NV44 126 aa5.25□□□□□ -1.57
DDX55-208ENST00000541259 LINC00472Q9H8W2 130 aa5.24□□□□□ -1.57
DDX55-208ENST00000541259 HMCN2Q8NDA2 5059 aa5.24□□□□□ -1.57
DDX55-208ENST00000541259 LPAP08519 4548 aa5.24□□□□□ -1.57
DDX55-208ENST00000541259 PCP4P48539 62 aa5.23□□□□□ -1.57
DDX55-208ENST00000541259 PRR4Q16378 134 aa5.22□□□□□ -1.57
DDX55-208ENST00000541259 NREPQ16612 68 aa5.22□□□□□ -1.57
DDX55-208ENST00000541259 Q6ZVQ6 151 aa5.21□□□□□ -1.58
DDX55-208ENST00000541259 IGKV4-1P06312 121 aa5.2□□□□□ -1.58
DDX55-208ENST00000541259 IGLV7-46A0A075B6I9 117 aa5.19□□□□□ -1.58
DDX55-208ENST00000541259 FP248Q71RG6 208 aaPredicted RBP5.19□□□□□ -1.58
DDX55-208ENST00000541259 FAM240AA0A1B0GVK7 77 aa5.18□□□□□ -1.58
DDX55-208ENST00000541259 ACYP1P07311 99 aa5.18□□□□□ -1.58
DDX55-208ENST00000541259 SIGMAR1Q99720 223 aa5.18□□□□□ -1.58
DDX55-208ENST00000541259 KRTAP4-11Q9BYQ6 195 aa5.18□□□□□ -1.58
DDX55-208ENST00000541259 UBL5Q9BZL1 73 aa5.18□□□□□ -1.58
DDX55-208ENST00000541259 J3KT08 172 aa5.16□□□□□ -1.58
DDX55-208ENST00000541259 J3QR89 54 aa5.16□□□□□ -1.58
DDX55-208ENST00000541259 DSCR10P59022 87 aa5.16□□□□□ -1.58
DDX55-208ENST00000541259 LRP2P98164 4655 aa5.15□□□□□ -1.58
DDX55-208ENST00000541259 C9orf92A6NGG3 77 aa5.15□□□□□ -1.59
DDX55-208ENST00000541259 BPY2O14599 106 aa5.15□□□□□ -1.59
DDX55-208ENST00000541259 KRTAP13-3Q3SY46 172 aa5.14□□□□□ -1.59
DDX55-208ENST00000541259 NOTCH2NLQ7Z3S9 236 aa5.14□□□□□ -1.59
DDX55-208ENST00000541259 IGHV6-1A0A0B4J1U7 121 aa5.13□□□□□ -1.59
DDX55-208ENST00000541259 IGKV3D-7A0A0C4DH55 119 aa5.13□□□□□ -1.59
DDX55-208ENST00000541259 A0A1B0GVX0 72 aa5.13□□□□□ -1.59
DDX55-208ENST00000541259 A8MWP4 228 aa5.13□□□□□ -1.59
DDX55-208ENST00000541259 K7ERU9 68 aa5.13□□□□□ -1.59
DDX55-208ENST00000541259 Q8N9L7 120 aa5.13□□□□□ -1.59
DDX55-208ENST00000541259 K7EQZ3 153 aa5.12□□□□□ -1.59
DDX55-208ENST00000541259 TPRXLQ17RH7 258 aa5.11□□□□□ -1.59
DDX55-208ENST00000541259 PRR15Q8IV56 129 aa5.11□□□□□ -1.59
DDX55-208ENST00000541259 NDUFB1O75438 58 aa5.1□□□□□ -1.59
DDX55-208ENST00000541259 MUC17Q685J3 4493 aa5.1□□□□□ -1.59
DDX55-208ENST00000541259 LINC00643Q86TS7 51 aa5.1□□□□□ -1.59
DDX55-208ENST00000541259 LINC00313P59037 77 aa5.09□□□□□ -1.59
DDX55-208ENST00000541259 CXCL6P80162 114 aa5.09□□□□□ -1.59
DDX55-208ENST00000541259 C8orf17Q9NRJ1 99 aa5.08□□□□□ -1.6
DDX55-208ENST00000541259 MMP24-AS1A0A0U1RRL7 71 aa5.07□□□□□ -1.6
DDX55-208ENST00000541259 KRTAP16-1A8MUX0 517 aa5.07□□□□□ -1.6
DDX55-208ENST00000541259 KRTAP4-2Q9BYR5 136 aa5.07□□□□□ -1.6
DDX55-208ENST00000541259 C8orf87E5RJ46 101 aa5.06□□□□□ -1.6
DDX55-208ENST00000541259 ATP5EP2Q5VTU8 51 aa5.06□□□□□ -1.6
DDX55-208ENST00000541259 HIST1H4AP62805 103 aaKnown RBP5.04□□□□□ -1.6
DDX55-208ENST00000541259 WFDC13Q8IUB5 93 aa5.04□□□□□ -1.6
DDX55-208ENST00000541259 UBR4Q5T4S7 5183 aa5.04□□□□□ -1.6
DDX55-208ENST00000541259 MT-ATP8P03928 68 aa5.03□□□□□ -1.6
DDX55-208ENST00000541259 A0A087WVE0 104 aa5.02□□□□□ -1.61
DDX55-208ENST00000541259 hDV103S1A0JD37 113 aa5.02□□□□□ -1.61
DDX55-208ENST00000541259 MPLKIPQ8TAP9 179 aa5.02□□□□□ -1.61
DDX55-208ENST00000541259 A8MUU9 505 aa5.01□□□□□ -1.61
DDX55-208ENST00000541259 HCG22E2RYF7 251 aa5.01□□□□□ -1.61
DDX55-208ENST00000541259 CASC2Q6XLA1 102 aa5.01□□□□□ -1.61
DDX55-208ENST00000541259 TMEM254Q8TBM7 123 aa5.01□□□□□ -1.61
DDX55-208ENST00000541259 C20orf166-AS1Q96NR2 134 aa5.01□□□□□ -1.61
DDX55-208ENST00000541259 RPL37P61927 97 aaKnown RBP5□□□□□ -1.61
DDX55-208ENST00000541259 Q75L30 129 aa5□□□□□ -1.61
DDX55-208ENST00000541259 MRPL34Q9BQ48 92 aaKnown RBP5□□□□□ -1.61
DDX55-208ENST00000541259 RNF213Q63HN8 5207 aa5□□□□□ -1.61
DDX55-208ENST00000541259 Q8N9P0 234 aaPredicted RBP4.99□□□□□ -1.61
DDX55-208ENST00000541259 PCOTHQ58A44 107 aa4.97□□□□□ -1.61
DDX55-208ENST00000541259 NDUFS5O43920 106 aa4.96□□□□□ -1.62
DDX55-208ENST00000541259 A0A0A0MQY5 61 aa4.95□□□□□ -1.62
DDX55-208ENST00000541259 SEC61BP60468 96 aaKnown RBP4.94□□□□□ -1.62
DDX55-208ENST00000541259 ATP11AUNQ6ZP68 121 aa4.94□□□□□ -1.62
DDX55-208ENST00000541259 IMUPQ9GZP8 106 aa4.94□□□□□ -1.62
DDX55-208ENST00000541259 KRTAP4-1Q9BYQ7 146 aa4.93□□□□□ -1.62
DDX55-208ENST00000541259 ZCCHC13Q8WW36 166 aaKnown RBP4.92□□□□□ -1.62
DDX55-208ENST00000541259 MUC2Q02817 5179 aa4.91□□□□□ -1.62
DDX55-208ENST00000541259 Q5W150 140 aa4.91□□□□□ -1.62
DDX55-208ENST00000541259 FAM236AA0A1B0GUQ0 79 aa4.89□□□□□ -1.63
DDX55-208ENST00000541259 FAM236BA0A1B0GV22 79 aa4.89□□□□□ -1.63
DDX55-208ENST00000541259 IGKV2-30P06310 120 aa4.88□□□□□ -1.63
DDX55-208ENST00000541259 SCGB1A1P11684 91 aa4.87□□□□□ -1.63
DDX55-208ENST00000541259 TP53AIP1Q9HCN2 124 aa4.87□□□□□ -1.63
DDX55-208ENST00000541259 OCR1Q9BZK8 76 aa4.86□□□□□ -1.63
DDX55-208ENST00000541259 UQCRQO14949 82 aa4.84□□□□□ -1.63
DDX55-208ENST00000541259 TRAV22A0A0B4J277 110 aa4.82□□□□□ -1.64
DDX55-208ENST00000541259 SPINK7P58062 85 aa4.82□□□□□ -1.64
DDX55-208ENST00000541259 IGKV2D-30A0A075B6S6 120 aa4.81□□□□□ -1.64
DDX55-208ENST00000541259 H0Y9P7 68 aa4.81□□□□□ -1.64
DDX55-208ENST00000541259 ATOX1O00244 68 aa4.8□□□□□ -1.64
DDX55-208ENST00000541259 TRAV7A0A075B6U4 112 aa4.79□□□□□ -1.64
DDX55-208ENST00000541259 HRES1P13985 223 aa4.79□□□□□ -1.64
DDX55-208ENST00000541259 C5orf47Q569G3 176 aa4.78□□□□□ -1.64
DDX55-208ENST00000541259 SMIM20Q8N5G0 67 aa4.78□□□□□ -1.64
DDX55-208ENST00000541259 FAT4Q6V0I7 4981 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms