RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 MOBPQ13875 183 aa8.21□□□□□ -1.09
RTN3-210ENST00000540798 ANAPC11Q9NYG5 84 aa8.21□□□□□ -1.1
RTN3-210ENST00000540798 KRTAP10-1P60331 282 aa8.2□□□□□ -1.1
RTN3-210ENST00000540798 Q5VV11 94 aa8.2□□□□□ -1.1
RTN3-210ENST00000540798 CHKB-CPT1BH3BT56 60 aa8.19□□□□□ -1.1
RTN3-210ENST00000540798 LRP1BQ9NZR2 4599 aa8.18□□□□□ -1.1
RTN3-210ENST00000540798 WFDC13Q8IUB5 93 aa8.17□□□□□ -1.1
RTN3-210ENST00000540798 ZCCHC13Q8WW36 166 aaKnown RBP8.17□□□□□ -1.1
RTN3-210ENST00000540798 SACSQ9NZJ4 4579 aa8.16□□□□□ -1.1
RTN3-210ENST00000540798 CASC2Q6XLA1 102 aa8.16□□□□□ -1.1
RTN3-210ENST00000540798 MMP24-AS1A0A0U1RRL7 71 aa8.15□□□□□ -1.1
RTN3-210ENST00000540798 C8orf87E5RJ46 101 aa8.15□□□□□ -1.1
RTN3-210ENST00000540798 ASB16-AS1Q495Z4 193 aa8.14□□□□□ -1.11
RTN3-210ENST00000540798 LCA10Q71F78 164 aa8.13□□□□□ -1.11
RTN3-210ENST00000540798 NDUFB1O75438 58 aa8.12□□□□□ -1.11
RTN3-210ENST00000540798 PRR15LQ9BU68 103 aa8.12□□□□□ -1.11
RTN3-210ENST00000540798 SSBP3-AS1Q7Z2R9 100 aa8.11□□□□□ -1.11
RTN3-210ENST00000540798 RYR3Q15413 4870 aa8.1□□□□□ -1.11
RTN3-210ENST00000540798 VPS13BQ7Z7G8 4022 aa8.09□□□□□ -1.11
RTN3-210ENST00000540798 A0A1B0GVX0 72 aa8.08□□□□□ -1.12
RTN3-210ENST00000540798 A6NN06 94 aa8.08□□□□□ -1.12
RTN3-210ENST00000540798 C8orf17Q9NRJ1 99 aa8.07□□□□□ -1.12
RTN3-210ENST00000540798 A6NED7 52 aa8.06□□□□□ -1.12
RTN3-210ENST00000540798 KRTAP13-2Q52LG2 175 aa8.05□□□□□ -1.12
RTN3-210ENST00000540798 A0A087X002 238 aa8.05□□□□□ -1.12
RTN3-210ENST00000540798 H3BPC8 53 aa8.05□□□□□ -1.12
RTN3-210ENST00000540798 PKHD1P08F94 4074 aa8.04□□□□□ -1.12
RTN3-210ENST00000540798 MP68P56378 58 aa8.04□□□□□ -1.12
RTN3-210ENST00000540798 PRAC1Q96KF2 57 aa8.04□□□□□ -1.12
RTN3-210ENST00000540798 KRTAP1-4P0C5Y4 121 aa8.04□□□□□ -1.12
RTN3-210ENST00000540798 Q8N9P0 234 aaPredicted RBP8.03□□□□□ -1.12
RTN3-210ENST00000540798 H0Y9P7 68 aa8.02□□□□□ -1.13
RTN3-210ENST00000540798 NDUFS5O43920 106 aa8.02□□□□□ -1.13
RTN3-210ENST00000540798 IGHV6-1A0A0B4J1U7 121 aa8.01□□□□□ -1.13
RTN3-210ENST00000540798 CDK2AP2O75956 126 aa8□□□□□ -1.13
RTN3-210ENST00000540798 TP53AIP1Q9HCN2 124 aa8□□□□□ -1.13
RTN3-210ENST00000540798 ATP11AUNQ6ZP68 121 aa8□□□□□ -1.13
RTN3-210ENST00000540798 C7orf65Q6ZTY9 151 aa8□□□□□ -1.13
RTN3-210ENST00000540798 LINC00208Q96KT6 92 aa7.99□□□□□ -1.13
RTN3-210ENST00000540798 NOTCH2NLQ7Z3S9 236 aa7.99□□□□□ -1.13
RTN3-210ENST00000540798 DYNC1H1Q14204 4646 aaKnown RBP7.99□□□□□ -1.13
RTN3-210ENST00000540798 RYR2Q92736 4967 aa7.98□□□□□ -1.13
RTN3-210ENST00000540798 A0A1B0GVY2 172 aa7.98□□□□□ -1.13
RTN3-210ENST00000540798 MRPL34Q9BQ48 92 aaKnown RBP7.97□□□□□ -1.13
RTN3-210ENST00000540798 ADM2Q7Z4H4 148 aa7.97□□□□□ -1.13
RTN3-210ENST00000540798 CYP4F30PQ9H0H9 118 aa7.97□□□□□ -1.13
RTN3-210ENST00000540798 SPINK6Q6UWN8 80 aa7.94□□□□□ -1.14
RTN3-210ENST00000540798 SPANXA2-OT1Q8N9U9 137 aa7.93□□□□□ -1.14
RTN3-210ENST00000540798 PRR26Q8N8Z3 221 aa7.92□□□□□ -1.14
RTN3-210ENST00000540798 APOBP04114 4563 aaKnown RBP7.92□□□□□ -1.14
RTN3-210ENST00000540798 LIMD2Q9BT23 127 aa7.91□□□□□ -1.14
RTN3-210ENST00000540798 LINC00313P59037 77 aa7.9□□□□□ -1.14
RTN3-210ENST00000540798 PLA2G1BP04054 148 aaKnown RBP7.89□□□□□ -1.15
RTN3-210ENST00000540798 KRTAP13-3Q3SY46 172 aa7.88□□□□□ -1.15
RTN3-210ENST00000540798 Q75L30 129 aa7.88□□□□□ -1.15
RTN3-210ENST00000540798 CDC42SE1Q9NRR8 79 aa7.88□□□□□ -1.15
RTN3-210ENST00000540798 SPINK7P58062 85 aa7.87□□□□□ -1.15
RTN3-210ENST00000540798 KRTAP10-4P60372 401 aaPredicted RBP7.86□□□□□ -1.15
RTN3-210ENST00000540798 SPAG11AQ6PDA7 123 aa7.85□□□□□ -1.15
RTN3-210ENST00000540798 TYMSOSQ8TAI1 123 aa7.85□□□□□ -1.15
RTN3-210ENST00000540798 PKHD1L1Q86WI1 4243 aa7.83□□□□□ -1.16
RTN3-210ENST00000540798 SPINK1P00995 79 aa7.83□□□□□ -1.16
RTN3-210ENST00000540798 IGLV7-46A0A075B6I9 117 aa7.83□□□□□ -1.16
RTN3-210ENST00000540798 EPPK1P58107 5090 aaKnown RBP7.83□□□□□ -1.16
RTN3-210ENST00000540798 Q5W150 140 aa7.83□□□□□ -1.16
RTN3-210ENST00000540798 LOC101927531A0A1B0GV80 90 aa7.82□□□□□ -1.16
RTN3-210ENST00000540798 KRTAP16-1A8MUX0 517 aa7.82□□□□□ -1.16
RTN3-210ENST00000540798 RPS29P62273 56 aaKnown RBP7.82□□□□□ -1.16
RTN3-210ENST00000540798 LINC01554Q52M75 96 aa7.81□□□□□ -1.16
RTN3-210ENST00000540798 COA5Q86WW8 74 aa7.81□□□□□ -1.16
RTN3-210ENST00000540798 SMR3BP02814 79 aaPredicted RBP7.8□□□□□ -1.16
RTN3-210ENST00000540798 FAT1Q14517 4588 aa7.79□□□□□ -1.16
RTN3-210ENST00000540798 PCOTHQ58A44 107 aa7.77□□□□□ -1.17
RTN3-210ENST00000540798 LINC00304Q8N9R0 145 aa7.76□□□□□ -1.17
RTN3-210ENST00000540798 FAM229AH3BQW9 127 aa7.74□□□□□ -1.17
RTN3-210ENST00000540798 BIRC6Q9NR09 4857 aa7.68□□□□□ -1.18
RTN3-210ENST00000540798 IGKV2-30P06310 120 aa7.67□□□□□ -1.18
RTN3-210ENST00000540798 LINC01558Q9Y6Z2 57 aa7.65□□□□□ -1.18
RTN3-210ENST00000540798 HRES1P13985 223 aa7.63□□□□□ -1.19
RTN3-210ENST00000540798 HSPG2P98160 4391 aa7.62□□□□□ -1.19
RTN3-210ENST00000540798 RETNLBQ9BQ08 111 aa7.62□□□□□ -1.19
RTN3-210ENST00000540798 CSAG1Q6PB30 78 aa7.6□□□□□ -1.19
RTN3-210ENST00000540798 TNXBP22105 4242 aa7.59□□□□□ -1.19
RTN3-210ENST00000540798 DMAC1Q96GE9 116 aa7.58□□□□□ -1.2
RTN3-210ENST00000540798 RYR1P21817 5038 aa7.56□□□□□ -1.2
RTN3-210ENST00000540798 C20orf166-AS1Q96NR2 134 aa7.54□□□□□ -1.2
RTN3-210ENST00000540798 A8MUU9 505 aa7.54□□□□□ -1.2
RTN3-210ENST00000540798 ACYP2P14621 99 aa7.54□□□□□ -1.2
RTN3-210ENST00000540798 KIAA1109Q2LD37 5005 aa7.54□□□□□ -1.2
RTN3-210ENST00000540798 FAT3Q8TDW7 4589 aa7.53□□□□□ -1.2
RTN3-210ENST00000540798 KRTAP10-8P60410 259 aa7.53□□□□□ -1.2
RTN3-210ENST00000540798 Q5VSD8 79 aa7.52□□□□□ -1.21
RTN3-210ENST00000540798 IGKV2D-30A0A075B6S6 120 aa7.51□□□□□ -1.21
RTN3-210ENST00000540798 LRP1Q07954 4544 aaKnown RBP7.5□□□□□ -1.21
RTN3-210ENST00000540798 FLG2Q5D862 2391 aaPredicted RBP7.5□□□□□ -1.21
RTN3-210ENST00000540798 Q8N1X5 172 aa7.49□□□□□ -1.21
RTN3-210ENST00000540798 C9orf92A6NGG3 77 aa7.48□□□□□ -1.21
RTN3-210ENST00000540798 KRTAP17-1Q9BYP8 105 aa7.48□□□□□ -1.21
RTN3-210ENST00000540798 HERC2O95714 4834 aa7.43□□□□□ -1.22
RTN3-210ENST00000540798 MT1HL1P0DM35 61 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms