RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 J3KT08 172 aa9.77□□□□□ -0.85
CLIP1-211ENST00000539080 Q6ZQT0 140 aa9.77□□□□□ -0.85
CLIP1-211ENST00000539080 TRBV20-1A0A075B6N2 111 aa9.76□□□□□ -0.85
CLIP1-211ENST00000539080 KRTAP9-6A0A140TA67 174 aa9.76□□□□□ -0.85
CLIP1-211ENST00000539080 A0A1B0GVX0 72 aa9.76□□□□□ -0.85
CLIP1-211ENST00000539080 FLGP20930 4061 aaPredicted RBP9.76□□□□□ -0.85
CLIP1-211ENST00000539080 LOC110117498A0A087WWA1 95 aa9.75□□□□□ -0.85
CLIP1-211ENST00000539080 PDE6GP18545 87 aa9.75□□□□□ -0.85
CLIP1-211ENST00000539080 BATFQ16520 125 aa9.7□□□□□ -0.86
CLIP1-211ENST00000539080 NDUFB1O75438 58 aa9.68□□□□□ -0.86
CLIP1-211ENST00000539080 LOC105371267A0A1B0GV96 52 aa9.66□□□□□ -0.86
CLIP1-211ENST00000539080 C14orf132Q9NPU4 83 aa9.66□□□□□ -0.86
CLIP1-211ENST00000539080 C9orf118A6NHY6 69 aa9.63□□□□□ -0.87
CLIP1-211ENST00000539080 A8MWP4 228 aa9.63□□□□□ -0.87
CLIP1-211ENST00000539080 H3BT86 120 aa9.61□□□□□ -0.87
CLIP1-211ENST00000539080 RBM12B-AS1Q9P1G2 102 aa9.6□□□□□ -0.87
CLIP1-211ENST00000539080 A0A1W2PPM0 123 aa9.59□□□□□ -0.87
CLIP1-211ENST00000539080 TAX1BP3O14907 124 aa9.59□□□□□ -0.87
CLIP1-211ENST00000539080 HRES1P13985 223 aa9.59□□□□□ -0.87
CLIP1-211ENST00000539080 Q8N9P0 234 aaPredicted RBP9.59□□□□□ -0.87
CLIP1-211ENST00000539080 MPLKIPQ8TAP9 179 aa9.59□□□□□ -0.87
CLIP1-211ENST00000539080 ZCCHC13Q8WW36 166 aaKnown RBP9.59□□□□□ -0.87
CLIP1-211ENST00000539080 C8orf17Q9NRJ1 99 aa9.58□□□□□ -0.88
CLIP1-211ENST00000539080 FAM236DA0A1B0GTK5 79 aa9.57□□□□□ -0.88
CLIP1-211ENST00000539080 FAM236CP0DP71 79 aa9.57□□□□□ -0.88
CLIP1-211ENST00000539080 NREPQ16612 68 aa9.57□□□□□ -0.88
CLIP1-211ENST00000539080 IGKV3D-7A0A0C4DH55 119 aa9.56□□□□□ -0.88
CLIP1-211ENST00000539080 CRCT1Q9UGL9 99 aa9.56□□□□□ -0.88
CLIP1-211ENST00000539080 PRR15Q8IV56 129 aa9.53□□□□□ -0.88
CLIP1-211ENST00000539080 Q6ZVQ6 151 aa9.5□□□□□ -0.89
CLIP1-211ENST00000539080 MTURNQ8N3F0 131 aa9.49□□□□□ -0.89
CLIP1-211ENST00000539080 FSIP2Q5CZC0 6907 aa9.49□□□□□ -0.89
CLIP1-211ENST00000539080 SPINK7P58062 85 aa9.48□□□□□ -0.89
CLIP1-211ENST00000539080 KRTAP9-8Q9BYQ0 159 aa9.47□□□□□ -0.89
CLIP1-211ENST00000539080 TMEM254Q8TBM7 123 aa9.45□□□□□ -0.9
CLIP1-211ENST00000539080 SPCS1Q9Y6A9 102 aa9.45□□□□□ -0.9
CLIP1-211ENST00000539080 MMP24-AS1A0A0U1RRL7 71 aa9.44□□□□□ -0.9
CLIP1-211ENST00000539080 MRPL34Q9BQ48 92 aaKnown RBP9.43□□□□□ -0.9
CLIP1-211ENST00000539080 K7EQZ3 153 aa9.41□□□□□ -0.9
CLIP1-211ENST00000539080 hDV103S1A0JD37 113 aa9.4□□□□□ -0.9
CLIP1-211ENST00000539080 BPY2O14599 106 aa9.4□□□□□ -0.9
CLIP1-211ENST00000539080 COL5A1-AS1Q5SY13 56 aa9.39□□□□□ -0.91
CLIP1-211ENST00000539080 SMCPP49901 116 aaPredicted RBP9.36□□□□□ -0.91
CLIP1-211ENST00000539080 WFDC13Q8IUB5 93 aa9.34□□□□□ -0.91
CLIP1-211ENST00000539080 NDUFS5O43920 106 aa9.32□□□□□ -0.92
CLIP1-211ENST00000539080 MT2AP02795 61 aa9.32□□□□□ -0.92
CLIP1-211ENST00000539080 PRO0461Q9UI25 63 aa9.31□□□□□ -0.92
CLIP1-211ENST00000539080 K7EP34 96 aa9.3□□□□□ -0.92
CLIP1-211ENST00000539080 CASC2Q6XLA1 102 aa9.26□□□□□ -0.93
CLIP1-211ENST00000539080 UBL5Q9BZL1 73 aa9.26□□□□□ -0.93
CLIP1-211ENST00000539080 Q8N9L7 120 aa9.25□□□□□ -0.93
CLIP1-211ENST00000539080 MT1FP04733 61 aa9.24□□□□□ -0.93
CLIP1-211ENST00000539080 LINC00846Q9NV44 126 aa9.23□□□□□ -0.93
CLIP1-211ENST00000539080 KRTAP10-10P60014 251 aa9.22□□□□□ -0.93
CLIP1-211ENST00000539080 GTF2H5Q6ZYL4 71 aa9.21□□□□□ -0.94
CLIP1-211ENST00000539080 Q5W150 140 aa9.2□□□□□ -0.94
CLIP1-211ENST00000539080 C7orf65Q6ZTY9 151 aa9.2□□□□□ -0.94
CLIP1-211ENST00000539080 HCG22E2RYF7 251 aa9.19□□□□□ -0.94
CLIP1-211ENST00000539080 IGKV2D-30A0A075B6S6 120 aa9.18□□□□□ -0.94
CLIP1-211ENST00000539080 IGKV2-30P06310 120 aa9.18□□□□□ -0.94
CLIP1-211ENST00000539080 F8W1H4 67 aa9.17□□□□□ -0.94
CLIP1-211ENST00000539080 CXCL6P80162 114 aa9.17□□□□□ -0.94
CLIP1-211ENST00000539080 H1FX-AS1Q4G0G2 97 aa9.16□□□□□ -0.94
CLIP1-211ENST00000539080 KRTAP9-3Q9BYQ3 159 aa9.16□□□□□ -0.94
CLIP1-211ENST00000539080 USH2AO75445 5202 aa9.14□□□□□ -0.95
CLIP1-211ENST00000539080 PCP4L1A6NKN8 68 aa9.1□□□□□ -0.95
CLIP1-211ENST00000539080 LCE2BO14633 110 aa9.1□□□□□ -0.95
CLIP1-211ENST00000539080 ETDBQ3ZM63 59 aa9.08□□□□□ -0.96
CLIP1-211ENST00000539080 SSPOA2VEC9 5147 aa9.04□□□□□ -0.96
CLIP1-211ENST00000539080 TP53AIP1Q9HCN2 124 aa9.03□□□□□ -0.96
CLIP1-211ENST00000539080 C4orf26Q17RF5 130 aa9.01□□□□□ -0.97
CLIP1-211ENST00000539080 ACYP1P07311 99 aa8.94□□□□□ -0.98
CLIP1-211ENST00000539080 KRTAP19-1Q8IUB9 90 aa8.93□□□□□ -0.98
CLIP1-211ENST00000539080 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.9□□□□□ -0.98
CLIP1-211ENST00000539080 FAM240AA0A1B0GVK7 77 aa8.89□□□□□ -0.99
CLIP1-211ENST00000539080 KRTAP3-1Q9BYR8 98 aa8.88□□□□□ -0.99
CLIP1-211ENST00000539080 C1orf64Q8NEQ6 169 aa8.87□□□□□ -0.99
CLIP1-211ENST00000539080 ATP5EP2Q5VTU8 51 aa8.86□□□□□ -0.99
CLIP1-211ENST00000539080 FCGBPQ9Y6R7 5405 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-211ENST00000539080 S4R3F8 94 aa8.84□□□□□ -0.99
CLIP1-211ENST00000539080 KRTAP19-6Q3LI70 58 aa8.82□□□□□ -1
CLIP1-211ENST00000539080 C5orf47Q569G3 176 aa8.82□□□□□ -1
CLIP1-211ENST00000539080 TRAV22A0A0B4J277 110 aa8.8□□□□□ -1
CLIP1-211ENST00000539080 CSAG1Q6PB30 78 aa8.79□□□□□ -1
CLIP1-211ENST00000539080 CYP4F30PQ9H0H9 118 aa8.79□□□□□ -1
CLIP1-211ENST00000539080 KRTAP9-7A8MTY7 169 aa8.78□□□□□ -1
CLIP1-211ENST00000539080 LOC101927531A0A1B0GV80 90 aa8.77□□□□□ -1.01
CLIP1-211ENST00000539080 LCA10Q71F78 164 aa8.77□□□□□ -1.01
CLIP1-211ENST00000539080 HIST1H4AP62805 103 aaKnown RBP8.76□□□□□ -1.01
CLIP1-211ENST00000539080 FAM236AA0A1B0GUQ0 79 aa8.72□□□□□ -1.01
CLIP1-211ENST00000539080 FAM236BA0A1B0GV22 79 aa8.72□□□□□ -1.01
CLIP1-211ENST00000539080 UQCRQO14949 82 aa8.72□□□□□ -1.01
CLIP1-211ENST00000539080 LINC00643Q86TS7 51 aa8.7□□□□□ -1.02
CLIP1-211ENST00000539080 ATOX1O00244 68 aa8.69□□□□□ -1.02
CLIP1-211ENST00000539080 H0Y9P7 68 aa8.65□□□□□ -1.02
CLIP1-211ENST00000539080 KRTAP3-3Q9BYR6 98 aa8.64□□□□□ -1.03
CLIP1-211ENST00000539080 A0A087WVE0 104 aa8.62□□□□□ -1.03
CLIP1-211ENST00000539080 A0A1B0GV90 55 aa8.61□□□□□ -1.03
CLIP1-211ENST00000539080 SPRR2GQ9BYE4 73 aa8.59□□□□□ -1.03
CLIP1-211ENST00000539080 KLKP1Q107X0 134 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms