RNA–Protein interactions for RNA: ENST00000538239.5

LRP6-203, Transcript of LDL receptor related protein 6, humanhuman

TSL 1 (best)

Gene LRP6, Length 7,812 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP6-203ENST00000538239 TACC2O95359 2948 aa3□□□□□ -1.93
LRP6-203ENST00000538239 UBR5O95071 2799 aaPredicted RBP3□□□□□ -1.93
LRP6-203ENST00000538239 KRTAP29-1A8MX34 341 aaPredicted RBP3□□□□□ -1.93
LRP6-203ENST00000538239 ITPR1Q14643 2758 aa3□□□□□ -1.93
LRP6-203ENST00000538239 H3BS24 57 aa3□□□□□ -1.93
LRP6-203ENST00000538239 HIVEP1P15822 2718 aa3□□□□□ -1.93
LRP6-203ENST00000538239 ASPMQ8IZT6 3477 aa2.98□□□□□ -1.93
LRP6-203ENST00000538239 Q5VV11 94 aa2.98□□□□□ -1.93
LRP6-203ENST00000538239 NBEAQ8NFP9 2946 aa2.98□□□□□ -1.93
LRP6-203ENST00000538239 A8MUU9 505 aa2.98□□□□□ -1.93
LRP6-203ENST00000538239 APCP25054 2843 aa2.97□□□□□ -1.93
LRP6-203ENST00000538239 FLNCQ14315 2725 aa2.96□□□□□ -1.94
LRP6-203ENST00000538239 PRAC1Q96KF2 57 aa2.96□□□□□ -1.94
LRP6-203ENST00000538239 ROMO1P60602 79 aa2.96□□□□□ -1.94
LRP6-203ENST00000538239 NSD1Q96L73 2696 aaPredicted RBP2.96□□□□□ -1.94
LRP6-203ENST00000538239 Q5XG85 94 aa2.96□□□□□ -1.94
LRP6-203ENST00000538239 LOC400499M0QZD8 3231 aa2.95□□□□□ -1.94
LRP6-203ENST00000538239 A0A1B0GVY2 172 aa2.94□□□□□ -1.94
LRP6-203ENST00000538239 NBPF19A0A087WUL8 3843 aa2.94□□□□□ -1.94
LRP6-203ENST00000538239 TENM4Q6N022 2769 aa2.93□□□□□ -1.94
LRP6-203ENST00000538239 ZZEF1O43149 2961 aa2.93□□□□□ -1.94
LRP6-203ENST00000538239 KRTAP1-4P0C5Y4 121 aa2.92□□□□□ -1.94
LRP6-203ENST00000538239 XP32Q5T750 250 aa2.91□□□□□ -1.94
LRP6-203ENST00000538239 WDFY3Q8IZQ1 3526 aa2.91□□□□□ -1.94
LRP6-203ENST00000538239 A8MU10 97 aa2.91□□□□□ -1.94
LRP6-203ENST00000538239 HRNRQ86YZ3 2850 aaPredicted RBP2.9□□□□□ -1.95
LRP6-203ENST00000538239 RELNP78509 3460 aa2.9□□□□□ -1.95
LRP6-203ENST00000538239 STAB2Q8WWQ8 2551 aa2.89□□□□□ -1.95
LRP6-203ENST00000538239 DMBT1Q9UGM3 2413 aaPredicted RBP2.88□□□□□ -1.95
LRP6-203ENST00000538239 ASH1LQ9NR48 2969 aaKnown RBP2.87□□□□□ -1.95
LRP6-203ENST00000538239 FLG2Q5D862 2391 aaPredicted RBP2.87□□□□□ -1.95
LRP6-203ENST00000538239 DMDP11532 3685 aa2.87□□□□□ -1.95
LRP6-203ENST00000538239 LAMA5O15230 3695 aa2.86□□□□□ -1.95
LRP6-203ENST00000538239 CELSR2Q9HCU4 2923 aa2.86□□□□□ -1.95
LRP6-203ENST00000538239 TPRXLQ17RH7 258 aa2.86□□□□□ -1.95
LRP6-203ENST00000538239 ZFHX4Q86UP3 3567 aa2.85□□□□□ -1.95
LRP6-203ENST00000538239 KRTAP10-10P60014 251 aa2.84□□□□□ -1.95
LRP6-203ENST00000538239 DCHS2Q6V1P9 2916 aa2.83□□□□□ -1.96
LRP6-203ENST00000538239 KRTAP10-8P60410 259 aa2.83□□□□□ -1.96
LRP6-203ENST00000538239 ZANQ9Y493 2812 aa2.83□□□□□ -1.96
LRP6-203ENST00000538239 TNP1P09430 55 aa2.82□□□□□ -1.96
LRP6-203ENST00000538239 KRTAP13-3Q3SY46 172 aa2.82□□□□□ -1.96
LRP6-203ENST00000538239 DCHS1Q96JQ0 3298 aa2.82□□□□□ -1.96
LRP6-203ENST00000538239 ANK3Q12955 4377 aaKnown RBP2.81□□□□□ -1.96
LRP6-203ENST00000538239 FBN2P35556 2912 aa2.81□□□□□ -1.96
LRP6-203ENST00000538239 TENM2Q9NT68 2774 aa2.8□□□□□ -1.96
LRP6-203ENST00000538239 CELSR1Q9NYQ6 3014 aa2.79□□□□□ -1.96
LRP6-203ENST00000538239 A0A0A0MQY5 61 aa2.79□□□□□ -1.96
LRP6-203ENST00000538239 NF1P21359 2839 aa2.79□□□□□ -1.96
LRP6-203ENST00000538239 NIPBLQ6KC79 2804 aaeCLIP2.78□□□□□ -1.96
LRP6-203ENST00000538239 CSMD1Q96PZ7 3565 aa2.78□□□□□ -1.97
LRP6-203ENST00000538239 KRTAP16-1A8MUX0 517 aa2.77□□□□□ -1.97
LRP6-203ENST00000538239 PDZD2O15018 2839 aa2.76□□□□□ -1.97
LRP6-203ENST00000538239 KRTAP25-1Q3LHN0 102 aa2.75□□□□□ -1.97
LRP6-203ENST00000538239 SMG1Q96Q15 3661 aaKnown RBP2.74□□□□□ -1.97
LRP6-203ENST00000538239 MUC3AQ02505 3323 aa2.74□□□□□ -1.97
LRP6-203ENST00000538239 C10orf95Q9H7T3 257 aa2.74□□□□□ -1.97
LRP6-203ENST00000538239 TENM1Q9UKZ4 2725 aa2.73□□□□□ -1.97
LRP6-203ENST00000538239 PRO2289Q9P1D8 64 aa2.73□□□□□ -1.97
LRP6-203ENST00000538239 ZFHX3Q15911 3703 aa2.73□□□□□ -1.97
LRP6-203ENST00000538239 BSNQ9UPA5 3926 aa2.72□□□□□ -1.97
LRP6-203ENST00000538239 A6NN06 94 aa2.71□□□□□ -1.97
LRP6-203ENST00000538239 SPENQ96T58 3664 aaKnown RBP2.71□□□□□ -1.98
LRP6-203ENST00000538239 MXRA5Q9NR99 2828 aa2.7□□□□□ -1.98
LRP6-203ENST00000538239 P0C880 135 aa2.69□□□□□ -1.98
LRP6-203ENST00000538239 CSMD2Q7Z408 3487 aa2.69□□□□□ -1.98
LRP6-203ENST00000538239 H0YAA0 97 aa2.68□□□□□ -1.98
LRP6-203ENST00000538239 SVEP1Q4LDE5 3571 aa2.67□□□□□ -1.98
LRP6-203ENST00000538239 OTOGQ6ZRI0 2925 aa2.67□□□□□ -1.98
LRP6-203ENST00000538239 HUWE1Q7Z6Z7 4374 aaKnown RBP2.66□□□□□ -1.98
LRP6-203ENST00000538239 FBN1P35555 2871 aaKnown RBP2.66□□□□□ -1.98
LRP6-203ENST00000538239 TENM3Q9P273 2699 aa2.65□□□□□ -1.98
LRP6-203ENST00000538239 PP632Q6XCG6 107 aa2.64□□□□□ -1.99
LRP6-203ENST00000538239 PKD1L1Q8TDX9 2849 aa2.64□□□□□ -1.99
LRP6-203ENST00000538239 ALMS1Q8TCU4 4167 aa2.62□□□□□ -1.99
LRP6-203ENST00000538239 TRRAPQ9Y4A5 3859 aa2.62□□□□□ -1.99
LRP6-203ENST00000538239 NDUFAF8A1L188 74 aa2.62□□□□□ -1.99
LRP6-203ENST00000538239 KRTAP4-5Q9BYR2 181 aa2.62□□□□□ -1.99
LRP6-203ENST00000538239 VWFP04275 2813 aa2.61□□□□□ -1.99
LRP6-203ENST00000538239 MT1HL1P0DM35 61 aa2.58□□□□□ -2
LRP6-203ENST00000538239 KRTAP12-2P59991 146 aa2.58□□□□□ -2
LRP6-203ENST00000538239 TGP01266 2768 aa2.58□□□□□ -2
LRP6-203ENST00000538239 VPS13CQ709C8 3753 aa2.57□□□□□ -2
LRP6-203ENST00000538239 AKAP9Q99996 3911 aa2.56□□□□□ -2
LRP6-203ENST00000538239 KRTAP3-1Q9BYR8 98 aa2.54□□□□□ -2
LRP6-203ENST00000538239 CUBNO60494 3623 aa2.54□□□□□ -2
LRP6-203ENST00000538239 KRTAP12-1P59990 96 aa2.5□□□□□ -2.01
LRP6-203ENST00000538239 KRTAP13-4Q3LI77 160 aa2.5□□□□□ -2.01
LRP6-203ENST00000538239 DNAH9Q9NYC9 4486 aa2.5□□□□□ -2.01
LRP6-203ENST00000538239 KRTAP10-4P60372 401 aaPredicted RBP2.49□□□□□ -2.01
LRP6-203ENST00000538239 ZNF469Q96JG9 3925 aaPredicted RBP2.49□□□□□ -2.01
LRP6-203ENST00000538239 KRTAP15-1Q3LI76 137 aa2.45□□□□□ -2.02
LRP6-203ENST00000538239 FBN3Q75N90 2809 aa2.45□□□□□ -2.02
LRP6-203ENST00000538239 COL7A1Q02388 2944 aa2.43□□□□□ -2.02
LRP6-203ENST00000538239 KRTAP10-6P60371 365 aaPredicted RBP2.43□□□□□ -2.02
LRP6-203ENST00000538239 CRCT1Q9UGL9 99 aa2.42□□□□□ -2.02
LRP6-203ENST00000538239 MEGF8Q7Z7M0 2845 aa2.42□□□□□ -2.02
LRP6-203ENST00000538239 DNAH1Q9P2D7 4330 aa2.41□□□□□ -2.02
LRP6-203ENST00000538239 CSMD3Q7Z407 3707 aa2.41□□□□□ -2.02
LRP6-203ENST00000538239 KRTAP10-12P60413 245 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms