RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 FAM229BQ4G0N7 80 aa3.97□□□□□ -1.77
USP28-206ENST00000538224 KTN1-AS1Q86SY8 53 aa3.97□□□□□ -1.77
USP28-206ENST00000538224 Q96NJ1 140 aa3.97□□□□□ -1.77
USP28-206ENST00000538224 A0A1B0GVX0 72 aa3.96□□□□□ -1.78
USP28-206ENST00000538224 ASB16-AS1Q495Z4 193 aa3.96□□□□□ -1.78
USP28-206ENST00000538224 DNAH11Q96DT5 4516 aa3.95□□□□□ -1.78
USP28-206ENST00000538224 DNAH5Q8TE73 4624 aa3.95□□□□□ -1.78
USP28-206ENST00000538224 TRAV22A0A0B4J277 110 aa3.95□□□□□ -1.78
USP28-206ENST00000538224 H0Y9P7 68 aa3.95□□□□□ -1.78
USP28-206ENST00000538224 C8orf17Q9NRJ1 99 aa3.95□□□□□ -1.78
USP28-206ENST00000538224 RBM12B-AS1Q9P1G2 102 aa3.95□□□□□ -1.78
USP28-206ENST00000538224 KMT2AQ03164 3969 aa3.94□□□□□ -1.78
USP28-206ENST00000538224 FRAS1Q86XX4 4008 aa3.94□□□□□ -1.78
USP28-206ENST00000538224 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.94□□□□□ -1.78
USP28-206ENST00000538224 CYP4F30PQ9H0H9 118 aa3.94□□□□□ -1.78
USP28-206ENST00000538224 C8orf87E5RJ46 101 aa3.93□□□□□ -1.78
USP28-206ENST00000538224 SPANXA2-OT1Q8N9U9 137 aa3.93□□□□□ -1.78
USP28-206ENST00000538224 LINC00208Q96KT6 92 aa3.93□□□□□ -1.78
USP28-206ENST00000538224 LIMD2Q9BT23 127 aa3.93□□□□□ -1.78
USP28-206ENST00000538224 IGHV6-1A0A0B4J1U7 121 aa3.92□□□□□ -1.78
USP28-206ENST00000538224 KRTAP10-1P60331 282 aa3.92□□□□□ -1.78
USP28-206ENST00000538224 MRPL34Q9BQ48 92 aaKnown RBP3.92□□□□□ -1.78
USP28-206ENST00000538224 KRTAP9-2Q9BYQ4 174 aa3.92□□□□□ -1.78
USP28-206ENST00000538224 PKD1P98161 4303 aa3.92□□□□□ -1.78
USP28-206ENST00000538224 C1orf64Q8NEQ6 169 aa3.91□□□□□ -1.78
USP28-206ENST00000538224 MPLKIPQ8TAP9 179 aa3.91□□□□□ -1.78
USP28-206ENST00000538224 ANAPC11Q9NYG5 84 aa3.91□□□□□ -1.78
USP28-206ENST00000538224 FAT2Q9NYQ8 4349 aa3.9□□□□□ -1.79
USP28-206ENST00000538224 KRTAP9-6A0A140TA67 174 aa3.89□□□□□ -1.79
USP28-206ENST00000538224 SPINK6Q6UWN8 80 aa3.88□□□□□ -1.79
USP28-206ENST00000538224 ATP11AUNQ6ZP68 121 aa3.88□□□□□ -1.79
USP28-206ENST00000538224 LOC101927531A0A1B0GV80 90 aa3.87□□□□□ -1.79
USP28-206ENST00000538224 A0A087X002 238 aa3.86□□□□□ -1.79
USP28-206ENST00000538224 RPS29P62273 56 aaKnown RBP3.86□□□□□ -1.79
USP28-206ENST00000538224 KRTAP13-2Q52LG2 175 aa3.86□□□□□ -1.79
USP28-206ENST00000538224 XP32Q5T750 250 aa3.86□□□□□ -1.79
USP28-206ENST00000538224 LCA10Q71F78 164 aa3.86□□□□□ -1.79
USP28-206ENST00000538224 IGLV7-46A0A075B6I9 117 aa3.85□□□□□ -1.79
USP28-206ENST00000538224 SPINK1P00995 79 aa3.85□□□□□ -1.79
USP28-206ENST00000538224 KRTAP1-4P0C5Y4 121 aa3.85□□□□□ -1.79
USP28-206ENST00000538224 LINC00313P59037 77 aa3.85□□□□□ -1.79
USP28-206ENST00000538224 SPAG11AQ6PDA7 123 aa3.85□□□□□ -1.79
USP28-206ENST00000538224 SACSQ9NZJ4 4579 aa3.85□□□□□ -1.79
USP28-206ENST00000538224 LRP1BQ9NZR2 4599 aa3.85□□□□□ -1.79
USP28-206ENST00000538224 FAM229AH3BQW9 127 aa3.84□□□□□ -1.79
USP28-206ENST00000538224 H3BS24 57 aa3.84□□□□□ -1.79
USP28-206ENST00000538224 PLA2G1BP04054 148 aaKnown RBP3.84□□□□□ -1.79
USP28-206ENST00000538224 C7orf65Q6ZTY9 151 aa3.84□□□□□ -1.79
USP28-206ENST00000538224 TYMSOSQ8TAI1 123 aa3.84□□□□□ -1.79
USP28-206ENST00000538224 A6NN06 94 aa3.83□□□□□ -1.8
USP28-206ENST00000538224 Q8N9P0 234 aaPredicted RBP3.82□□□□□ -1.8
USP28-206ENST00000538224 HYDINQ4G0P3 5121 aa3.81□□□□□ -1.8
USP28-206ENST00000538224 A0A1B0GVY2 172 aa3.81□□□□□ -1.8
USP28-206ENST00000538224 PRR4Q16378 134 aa3.81□□□□□ -1.8
USP28-206ENST00000538224 NOTCH2NLQ7Z3S9 236 aa3.81□□□□□ -1.8
USP28-206ENST00000538224 KRTAP13-3Q3SY46 172 aa3.8□□□□□ -1.8
USP28-206ENST00000538224 PCOTHQ58A44 107 aa3.8□□□□□ -1.8
USP28-206ENST00000538224 LCE3BQ5TA77 95 aa3.8□□□□□ -1.8
USP28-206ENST00000538224 Q5VV11 94 aa3.8□□□□□ -1.8
USP28-206ENST00000538224 LINC00304Q8N9R0 145 aa3.8□□□□□ -1.8
USP28-206ENST00000538224 COA5Q86WW8 74 aa3.79□□□□□ -1.8
USP28-206ENST00000538224 KRTAP4-8A0A0G2JLE6 195 aa3.78□□□□□ -1.8
USP28-206ENST00000538224 A8MUN3 132 aa3.78□□□□□ -1.8
USP28-206ENST00000538224 Q75L30 129 aa3.78□□□□□ -1.8
USP28-206ENST00000538224 PRR26Q8N8Z3 221 aa3.78□□□□□ -1.8
USP28-206ENST00000538224 DYNC1H1Q14204 4646 aaKnown RBP3.78□□□□□ -1.8
USP28-206ENST00000538224 PSPHP1O15172 72 aa3.77□□□□□ -1.81
USP28-206ENST00000538224 CDC42SE1Q9NRR8 79 aa3.77□□□□□ -1.81
USP28-206ENST00000538224 KRTAP16-1A8MUX0 517 aa3.76□□□□□ -1.81
USP28-206ENST00000538224 Q5W150 140 aa3.76□□□□□ -1.81
USP28-206ENST00000538224 VPS13BQ7Z7G8 4022 aa3.75□□□□□ -1.81
USP28-206ENST00000538224 CHKB-CPT1BH3BT56 60 aa3.75□□□□□ -1.81
USP28-206ENST00000538224 IGKV2-30P06310 120 aa3.75□□□□□ -1.81
USP28-206ENST00000538224 APOBP04114 4563 aaKnown RBP3.75□□□□□ -1.81
USP28-206ENST00000538224 PKHD1P08F94 4074 aa3.75□□□□□ -1.81
USP28-206ENST00000538224 ACYP2P14621 99 aa3.74□□□□□ -1.81
USP28-206ENST00000538224 SMR3BP02814 79 aaPredicted RBP3.73□□□□□ -1.81
USP28-206ENST00000538224 DMAC1Q96GE9 116 aa3.73□□□□□ -1.81
USP28-206ENST00000538224 HRES1P13985 223 aa3.72□□□□□ -1.81
USP28-206ENST00000538224 KRTAP10-4P60372 401 aaPredicted RBP3.72□□□□□ -1.81
USP28-206ENST00000538224 LINC01554Q52M75 96 aa3.72□□□□□ -1.81
USP28-206ENST00000538224 SPTSSBQ8NFR3 76 aa3.72□□□□□ -1.81
USP28-206ENST00000538224 RYR2Q92736 4967 aa3.71□□□□□ -1.82
USP28-206ENST00000538224 KRTAP9-9Q9BYP9 154 aa3.71□□□□□ -1.82
USP28-206ENST00000538224 KRTAP9-4Q9BYQ2 154 aa3.71□□□□□ -1.82
USP28-206ENST00000538224 LINC01558Q9Y6Z2 57 aa3.7□□□□□ -1.82
USP28-206ENST00000538224 IGKV2D-30A0A075B6S6 120 aa3.69□□□□□ -1.82
USP28-206ENST00000538224 A6NED7 52 aa3.69□□□□□ -1.82
USP28-206ENST00000538224 PRR15LQ9BU68 103 aa3.69□□□□□ -1.82
USP28-206ENST00000538224 KRTAP4-7Q9BYR0 210 aa3.69□□□□□ -1.82
USP28-206ENST00000538224 PKHD1L1Q86WI1 4243 aa3.69□□□□□ -1.82
USP28-206ENST00000538224 A8MU10 97 aa3.68□□□□□ -1.82
USP28-206ENST00000538224 C20orf166-AS1Q96NR2 134 aa3.68□□□□□ -1.82
USP28-206ENST00000538224 RETNLBQ9BQ08 111 aa3.68□□□□□ -1.82
USP28-206ENST00000538224 A8MUU9 505 aa3.67□□□□□ -1.82
USP28-206ENST00000538224 FAT1Q14517 4588 aa3.66□□□□□ -1.82
USP28-206ENST00000538224 KRTAP4-12Q9BQ66 201 aa3.66□□□□□ -1.82
USP28-206ENST00000538224 Q5VSD8 79 aa3.64□□□□□ -1.83
USP28-206ENST00000538224 KMT2CQ8NEZ4 4911 aaKnown RBP3.62□□□□□ -1.83
USP28-206ENST00000538224 C9orf92A6NGG3 77 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms