RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 H3BQ85 93 aa11.34□□□□□ -0.59
CPSF1-202ENST00000527827 FXYD2P54710 66 aa11.34□□□□□ -0.59
CPSF1-202ENST00000527827 TMEM238LA0A1B0GVL6 79 aa11.33□□□□□ -0.6
CPSF1-202ENST00000527827 A6NJY4 79 aa11.33□□□□□ -0.6
CPSF1-202ENST00000527827 TMEM256-PLSCR3K7ERE1 68 aa11.32□□□□□ -0.6
CPSF1-202ENST00000527827 A8MWP4 228 aa11.3□□□□□ -0.6
CPSF1-202ENST00000527827 UBE2V1Q13404 147 aa11.25□□□□□ -0.61
CPSF1-202ENST00000527827 VAMP8Q9BV40 100 aa11.25□□□□□ -0.61
CPSF1-202ENST00000527827 PSMB2P49721 201 aa11.23□□□□□ -0.61
CPSF1-202ENST00000527827 KRTAP6-3Q3LI67 103 aa11.23□□□□□ -0.61
CPSF1-202ENST00000527827 Q8N9P0 234 aaPredicted RBP11.23□□□□□ -0.61
CPSF1-202ENST00000527827 VPS25Q9BRG1 176 aa11.23□□□□□ -0.61
CPSF1-202ENST00000527827 WFDC13Q8IUB5 93 aa11.21□□□□□ -0.61
CPSF1-202ENST00000527827 K7ERJ3 54 aa11.2□□□□□ -0.62
CPSF1-202ENST00000527827 S100A1P23297 94 aa11.18□□□□□ -0.62
CPSF1-202ENST00000527827 J3KT08 172 aa11.17□□□□□ -0.62
CPSF1-202ENST00000527827 COX6CP09669 75 aa11.17□□□□□ -0.62
CPSF1-202ENST00000527827 RBM3P98179 157 aaKnown RBP11.16□□□□□ -0.62
CPSF1-202ENST00000527827 DSCR8Q96T75 97 aa11.13□□□□□ -0.63
CPSF1-202ENST00000527827 HSD52Q0P140 79 aa11.11□□□□□ -0.63
CPSF1-202ENST00000527827 Q6ZQT0 140 aa11.1□□□□□ -0.63
CPSF1-202ENST00000527827 C8orf17Q9NRJ1 99 aa11.09□□□□□ -0.63
CPSF1-202ENST00000527827 NDUFB1O75438 58 aa11.08□□□□□ -0.64
CPSF1-202ENST00000527827 LYRM7Q5U5X0 104 aa11.08□□□□□ -0.64
CPSF1-202ENST00000527827 C21orf62-AS1Q17RA5 79 aa11.07□□□□□ -0.64
CPSF1-202ENST00000527827 C9JAW5 83 aa11.05□□□□□ -0.64
CPSF1-202ENST00000527827 IGKV3D-7A0A0C4DH55 119 aa11.01□□□□□ -0.65
CPSF1-202ENST00000527827 H1FX-AS1Q4G0G2 97 aa11□□□□□ -0.65
CPSF1-202ENST00000527827 BAALC-AS2P0C853 105 aa10.99□□□□□ -0.65
CPSF1-202ENST00000527827 Q6ZVQ6 151 aa10.99□□□□□ -0.65
CPSF1-202ENST00000527827 SCGB1C2P0DMR2 95 aa10.98□□□□□ -0.65
CPSF1-202ENST00000527827 PYY3Q5JQD4 70 aa10.9□□□□□ -0.66
CPSF1-202ENST00000527827 PRR15Q8IV56 129 aa10.9□□□□□ -0.66
CPSF1-202ENST00000527827 A0A1B0GW54 56 aa10.89□□□□□ -0.67
CPSF1-202ENST00000527827 NEBP20929 6669 aa10.87□□□□□ -0.67
CPSF1-202ENST00000527827 MRPL34Q9BQ48 92 aaKnown RBP10.87□□□□□ -0.67
CPSF1-202ENST00000527827 LOC110117498A0A087WWA1 95 aa10.86□□□□□ -0.67
CPSF1-202ENST00000527827 MMP24-AS1A0A0U1RRL7 71 aa10.86□□□□□ -0.67
CPSF1-202ENST00000527827 TMEM254Q8TBM7 123 aa10.86□□□□□ -0.67
CPSF1-202ENST00000527827 JMJD7-PLA2G4BH0Y9G9 81 aa10.84□□□□□ -0.67
CPSF1-202ENST00000527827 UQCR10Q9UDW1 63 aa10.83□□□□□ -0.68
CPSF1-202ENST00000527827 PDE6GP18545 87 aa10.78□□□□□ -0.68
CPSF1-202ENST00000527827 C14orf132Q9NPU4 83 aa10.77□□□□□ -0.69
CPSF1-202ENST00000527827 IGKV2D-30A0A075B6S6 120 aa10.76□□□□□ -0.69
CPSF1-202ENST00000527827 IGKV2-30P06310 120 aa10.76□□□□□ -0.69
CPSF1-202ENST00000527827 NREPQ16612 68 aa10.76□□□□□ -0.69
CPSF1-202ENST00000527827 hDV103S1A0JD37 113 aa10.75□□□□□ -0.69
CPSF1-202ENST00000527827 NDUFS5O43920 106 aa10.75□□□□□ -0.69
CPSF1-202ENST00000527827 ATXN8Q156A1 80 aa10.75□□□□□ -0.69
CPSF1-202ENST00000527827 A6NN06 94 aa10.74□□□□□ -0.69
CPSF1-202ENST00000527827 MUC12Q9UKN1 5478 aa10.73□□□□□ -0.69
CPSF1-202ENST00000527827 K7EQZ3 153 aa10.72□□□□□ -0.69
CPSF1-202ENST00000527827 MT1BP07438 61 aa10.72□□□□□ -0.69
CPSF1-202ENST00000527827 Q5W150 140 aa10.72□□□□□ -0.69
CPSF1-202ENST00000527827 C7orf65Q6ZTY9 151 aa10.72□□□□□ -0.69
CPSF1-202ENST00000527827 NAA38Q9BRA0 125 aaKnown RBP10.69□□□□□ -0.7
CPSF1-202ENST00000527827 C4orf26Q17RF5 130 aa10.65□□□□□ -0.7
CPSF1-202ENST00000527827 Q5VV11 94 aa10.63□□□□□ -0.71
CPSF1-202ENST00000527827 KRTAP19-8Q3LI54 63 aa10.62□□□□□ -0.71
CPSF1-202ENST00000527827 KRTAP20-1Q3LI63 56 aa10.62□□□□□ -0.71
CPSF1-202ENST00000527827 C5orf47Q569G3 176 aa10.62□□□□□ -0.71
CPSF1-202ENST00000527827 FAM236AA0A1B0GUQ0 79 aa10.61□□□□□ -0.71
CPSF1-202ENST00000527827 FAM236BA0A1B0GV22 79 aa10.61□□□□□ -0.71
CPSF1-202ENST00000527827 SPRR2GQ9BYE4 73 aa10.58□□□□□ -0.72
CPSF1-202ENST00000527827 KRTAP10-5P60370 271 aa10.56□□□□□ -0.72
CPSF1-202ENST00000527827 KRTAP5-9P26371 169 aa10.53□□□□□ -0.72
CPSF1-202ENST00000527827 BPY2O14599 106 aa10.52□□□□□ -0.73
CPSF1-202ENST00000527827 KRTAP3-1Q9BYR8 98 aa10.52□□□□□ -0.73
CPSF1-202ENST00000527827 HCG22E2RYF7 251 aa10.51□□□□□ -0.73
CPSF1-202ENST00000527827 M0R143 59 aa10.5□□□□□ -0.73
CPSF1-202ENST00000527827 CASC2Q6XLA1 102 aa10.49□□□□□ -0.73
CPSF1-202ENST00000527827 Q8N9L7 120 aa10.47□□□□□ -0.73
CPSF1-202ENST00000527827 S4R3F8 94 aa10.47□□□□□ -0.73
CPSF1-202ENST00000527827 CSAG1Q6PB30 78 aa10.45□□□□□ -0.74
CPSF1-202ENST00000527827 CXCL6P80162 114 aa10.43□□□□□ -0.74
CPSF1-202ENST00000527827 LCA10Q71F78 164 aa10.42□□□□□ -0.74
CPSF1-202ENST00000527827 KMT2DO14686 5537 aa10.41□□□□□ -0.74
CPSF1-202ENST00000527827 KLKP1Q107X0 134 aa10.38□□□□□ -0.75
CPSF1-202ENST00000527827 TMA7Q9Y2S6 64 aaKnown RBP10.38□□□□□ -0.75
CPSF1-202ENST00000527827 C1orf64Q8NEQ6 169 aa10.37□□□□□ -0.75
CPSF1-202ENST00000527827 H3BT86 120 aa10.36□□□□□ -0.75
CPSF1-202ENST00000527827 MDN1Q9NU22 5596 aa10.35□□□□□ -0.75
CPSF1-202ENST00000527827 KRTAP3-3Q9BYR6 98 aa10.27□□□□□ -0.77
CPSF1-202ENST00000527827 TSTD3H0UI37 97 aa10.25□□□□□ -0.77
CPSF1-202ENST00000527827 IMUPQ9GZP8 106 aa10.23□□□□□ -0.77
CPSF1-202ENST00000527827 SMCPP49901 116 aaPredicted RBP10.22□□□□□ -0.77
CPSF1-202ENST00000527827 KRTAP2-3P0C7H8 128 aa10.21□□□□□ -0.77
CPSF1-202ENST00000527827 BATFQ16520 125 aa10.21□□□□□ -0.77
CPSF1-202ENST00000527827 KRTAP2-4Q9BYR9 128 aa10.21□□□□□ -0.77
CPSF1-202ENST00000527827 C9orf118A6NHY6 69 aa10.19□□□□□ -0.78
CPSF1-202ENST00000527827 A0A1W2PPM0 123 aa10.17□□□□□ -0.78
CPSF1-202ENST00000527827 CRIPTQ9P021 101 aa10.17□□□□□ -0.78
CPSF1-202ENST00000527827 TAX1BP3O14907 124 aa10.12□□□□□ -0.79
CPSF1-202ENST00000527827 A0A087WVE0 104 aa10.1□□□□□ -0.79
CPSF1-202ENST00000527827 UBL5Q9BZL1 73 aa10.09□□□□□ -0.79
CPSF1-202ENST00000527827 TP53AIP1Q9HCN2 124 aa10.08□□□□□ -0.8
CPSF1-202ENST00000527827 SPRR2FQ96RM1 72 aa10.07□□□□□ -0.8
CPSF1-202ENST00000527827 SMIM6P0DI80 62 aa10.05□□□□□ -0.8
CPSF1-202ENST00000527827 SPRR2EP22531 72 aa10.04□□□□□ -0.8
CPSF1-202ENST00000527827 SPRR2BP35325 72 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms