RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 DMBT1Q9UGM3 2413 aaPredicted RBP6.5□□□□□ -1.37
LIMCH1-217ENST00000512946 LRBAP50851 2863 aa6.49□□□□□ -1.37
LIMCH1-217ENST00000512946 ITPR3Q14573 2671 aa6.48□□□□□ -1.37
LIMCH1-217ENST00000512946 TNP1P09430 55 aa6.48□□□□□ -1.37
LIMCH1-217ENST00000512946 A8MU10 97 aa6.47□□□□□ -1.37
LIMCH1-217ENST00000512946 MAST4O15021 2626 aa6.45□□□□□ -1.38
LIMCH1-217ENST00000512946 SETXQ7Z333 2677 aaKnown RBP6.45□□□□□ -1.38
LIMCH1-217ENST00000512946 FLNAP21333 2647 aaKnown RBP6.45□□□□□ -1.38
LIMCH1-217ENST00000512946 ITPR2Q14571 2701 aa6.45□□□□□ -1.38
LIMCH1-217ENST00000512946 NOTCH2NLQ7Z3S9 236 aa6.44□□□□□ -1.38
LIMCH1-217ENST00000512946 ATRQ13535 2644 aa6.44□□□□□ -1.38
LIMCH1-217ENST00000512946 ASH1LQ9NR48 2969 aaKnown RBP6.44□□□□□ -1.38
LIMCH1-217ENST00000512946 UNC79Q9P2D8 2635 aa6.44□□□□□ -1.38
LIMCH1-217ENST00000512946 KRTAP1-1Q07627 177 aa6.42□□□□□ -1.38
LIMCH1-217ENST00000512946 BSNQ9UPA5 3926 aa6.42□□□□□ -1.38
LIMCH1-217ENST00000512946 KRTAP1-3Q8IUG1 177 aa6.41□□□□□ -1.38
LIMCH1-217ENST00000512946 CELSR2Q9HCU4 2923 aa6.4□□□□□ -1.38
LIMCH1-217ENST00000512946 C10orf95Q9H7T3 257 aa6.38□□□□□ -1.39
LIMCH1-217ENST00000512946 DCHS2Q6V1P9 2916 aa6.38□□□□□ -1.39
LIMCH1-217ENST00000512946 MGAM2Q2M2H8 2515 aa6.36□□□□□ -1.39
LIMCH1-217ENST00000512946 UBR5O95071 2799 aaPredicted RBP6.36□□□□□ -1.39
LIMCH1-217ENST00000512946 P0C880 135 aa6.35□□□□□ -1.39
LIMCH1-217ENST00000512946 SVEP1Q4LDE5 3571 aa6.34□□□□□ -1.39
LIMCH1-217ENST00000512946 TEX15Q9BXT5 2789 aa6.33□□□□□ -1.4
LIMCH1-217ENST00000512946 KRTAP1-5Q9BYS1 174 aa6.32□□□□□ -1.4
LIMCH1-217ENST00000512946 ZANQ9Y493 2812 aa6.32□□□□□ -1.4
LIMCH1-217ENST00000512946 CSMD1Q96PZ7 3565 aa6.31□□□□□ -1.4
LIMCH1-217ENST00000512946 STAB1Q9NY15 2570 aa6.29□□□□□ -1.4
LIMCH1-217ENST00000512946 Q5VSD8 79 aa6.28□□□□□ -1.4
LIMCH1-217ENST00000512946 KRTAP10-1P60331 282 aa6.27□□□□□ -1.41
LIMCH1-217ENST00000512946 COL6A5A8TX70 2615 aa6.26□□□□□ -1.41
LIMCH1-217ENST00000512946 APCP25054 2843 aa6.26□□□□□ -1.41
LIMCH1-217ENST00000512946 NIPBLQ6KC79 2804 aaeCLIP6.26□□□□□ -1.41
LIMCH1-217ENST00000512946 TENM4Q6N022 2769 aa6.25□□□□□ -1.41
LIMCH1-217ENST00000512946 CELSR1Q9NYQ6 3014 aa6.25□□□□□ -1.41
LIMCH1-217ENST00000512946 KRTAP13-1Q8IUC0 172 aa6.22□□□□□ -1.41
LIMCH1-217ENST00000512946 Q6ZRN7 208 aaPredicted RBP6.21□□□□□ -1.42
LIMCH1-217ENST00000512946 NBEAL1Q6ZS30 2694 aa6.19□□□□□ -1.42
LIMCH1-217ENST00000512946 HIVEP1P15822 2718 aa6.19□□□□□ -1.42
LIMCH1-217ENST00000512946 HRNRQ86YZ3 2850 aaPredicted RBP6.18□□□□□ -1.42
LIMCH1-217ENST00000512946 CSMD2Q7Z408 3487 aa6.17□□□□□ -1.42
LIMCH1-217ENST00000512946 STAB2Q8WWQ8 2551 aa6.17□□□□□ -1.42
LIMCH1-217ENST00000512946 NF1P21359 2839 aa6.17□□□□□ -1.42
LIMCH1-217ENST00000512946 VPS13CQ709C8 3753 aa6.16□□□□□ -1.42
LIMCH1-217ENST00000512946 KMT2BQ9UMN6 2715 aaPredicted RBP6.16□□□□□ -1.42
LIMCH1-217ENST00000512946 KRTAP10-2P60368 255 aa6.16□□□□□ -1.42
LIMCH1-217ENST00000512946 ZFHX3Q15911 3703 aa6.15□□□□□ -1.43
LIMCH1-217ENST00000512946 NBPF19A0A087WUL8 3843 aa6.13□□□□□ -1.43
LIMCH1-217ENST00000512946 NOTCH1P46531 2555 aa6.12□□□□□ -1.43
LIMCH1-217ENST00000512946 FBN2P35556 2912 aa6.12□□□□□ -1.43
LIMCH1-217ENST00000512946 H0YAA0 97 aa6.11□□□□□ -1.43
LIMCH1-217ENST00000512946 KRTAP13-2Q52LG2 175 aa6.09□□□□□ -1.43
LIMCH1-217ENST00000512946 KRTAP7-1Q8IUC3 87 aa6.09□□□□□ -1.43
LIMCH1-217ENST00000512946 CUBNO60494 3623 aa6.06□□□□□ -1.44
LIMCH1-217ENST00000512946 NSD1Q96L73 2696 aaPredicted RBP6.03□□□□□ -1.44
LIMCH1-217ENST00000512946 OTOGQ6ZRI0 2925 aa6.02□□□□□ -1.45
LIMCH1-217ENST00000512946 MXRA5Q9NR99 2828 aa6.02□□□□□ -1.45
LIMCH1-217ENST00000512946 KRTAP10-8P60410 259 aa6□□□□□ -1.45
LIMCH1-217ENST00000512946 PDZD2O15018 2839 aa5.95□□□□□ -1.46
LIMCH1-217ENST00000512946 NBEAL2Q6ZNJ1 2754 aa5.95□□□□□ -1.46
LIMCH1-217ENST00000512946 PRO2289Q9P1D8 64 aa5.9□□□□□ -1.47
LIMCH1-217ENST00000512946 FBN1P35555 2871 aaKnown RBP5.86□□□□□ -1.47
LIMCH1-217ENST00000512946 ZNF469Q96JG9 3925 aaPredicted RBP5.85□□□□□ -1.47
LIMCH1-217ENST00000512946 INE1O15225 51 aa5.84□□□□□ -1.47
LIMCH1-217ENST00000512946 TENM1Q9UKZ4 2725 aa5.84□□□□□ -1.48
LIMCH1-217ENST00000512946 XP32Q5T750 250 aa5.79□□□□□ -1.48
LIMCH1-217ENST00000512946 KRTAP13-4Q3LI77 160 aa5.77□□□□□ -1.49
LIMCH1-217ENST00000512946 VWFP04275 2813 aa5.75□□□□□ -1.49
LIMCH1-217ENST00000512946 TPRXLQ17RH7 258 aa5.74□□□□□ -1.49
LIMCH1-217ENST00000512946 KRTAP1-4P0C5Y4 121 aa5.73□□□□□ -1.49
LIMCH1-217ENST00000512946 KRTAP13-3Q3SY46 172 aa5.71□□□□□ -1.49
LIMCH1-217ENST00000512946 AKAP9Q99996 3911 aa5.68□□□□□ -1.5
LIMCH1-217ENST00000512946 PKD1L1Q8TDX9 2849 aa5.67□□□□□ -1.5
LIMCH1-217ENST00000512946 TGP01266 2768 aa5.64□□□□□ -1.51
LIMCH1-217ENST00000512946 TRRAPQ9Y4A5 3859 aa5.63□□□□□ -1.51
LIMCH1-217ENST00000512946 KRTAP12-2P59991 146 aa5.61□□□□□ -1.51
LIMCH1-217ENST00000512946 KRTAP12-1P59990 96 aa5.6□□□□□ -1.51
LIMCH1-217ENST00000512946 KRTAP10-10P60014 251 aa5.59□□□□□ -1.51
LIMCH1-217ENST00000512946 ANK3Q12955 4377 aaKnown RBP5.52□□□□□ -1.53
LIMCH1-217ENST00000512946 A0A1B0GVY2 172 aa5.51□□□□□ -1.53
LIMCH1-217ENST00000512946 TENM3Q9P273 2699 aa5.51□□□□□ -1.53
LIMCH1-217ENST00000512946 KRTAP15-1Q3LI76 137 aa5.5□□□□□ -1.53
LIMCH1-217ENST00000512946 TENM2Q9NT68 2774 aa5.47□□□□□ -1.53
LIMCH1-217ENST00000512946 KRTAP21-3Q3LHN1 58 aa5.43□□□□□ -1.54
LIMCH1-217ENST00000512946 KRTAP23-1A1A580 65 aa5.34□□□□□ -1.55
LIMCH1-217ENST00000512946 FBN3Q75N90 2809 aa5.33□□□□□ -1.56
LIMCH1-217ENST00000512946 KRTAP10-6P60371 365 aaPredicted RBP5.31□□□□□ -1.56
LIMCH1-217ENST00000512946 KRTAP3-1Q9BYR8 98 aa5.29□□□□□ -1.56
LIMCH1-217ENST00000512946 DNHD1Q96M86 4753 aa5.28□□□□□ -1.56
LIMCH1-217ENST00000512946 MEGF8Q7Z7M0 2845 aa5.28□□□□□ -1.56
LIMCH1-217ENST00000512946 ANK2Q01484 3957 aa5.26□□□□□ -1.57
LIMCH1-217ENST00000512946 SRRM2Q9UQ35 2752 aaKnown RBP5.21□□□□□ -1.58
LIMCH1-217ENST00000512946 COL7A1Q02388 2944 aa5.21□□□□□ -1.58
LIMCH1-217ENST00000512946 CSMD3Q7Z407 3707 aa5.07□□□□□ -1.6
LIMCH1-217ENST00000512946 KRTAP10-12P60413 245 aa5.05□□□□□ -1.6
LIMCH1-217ENST00000512946 KRTAP3-2Q9BYR7 98 aa5.05□□□□□ -1.6
LIMCH1-217ENST00000512946 LYSTQ99698 3801 aa5.03□□□□□ -1.6
LIMCH1-217ENST00000512946 CMYA5Q8N3K9 4069 aa5.01□□□□□ -1.61
LIMCH1-217ENST00000512946 KRTAP12-3P60328 96 aa4.99□□□□□ -1.61
LIMCH1-217ENST00000512946 PRKDCP78527 4128 aaKnown RBP4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms