RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 Q5VSD8 79 aa1.99□□□□□ -2.09
USP53-205ENST00000509769 NOTCH3Q9UM47 2321 aa1.99□□□□□ -2.09
USP53-205ENST00000509769 ALMS1Q8TCU4 4167 aa1.99□□□□□ -2.09
USP53-205ENST00000509769 DCHS1Q96JQ0 3298 aa1.98□□□□□ -2.09
USP53-205ENST00000509769 SONP18583 2426 aaKnown RBP1.98□□□□□ -2.09
USP53-205ENST00000509769 DNAH12Q6ZR08 3092 aa1.98□□□□□ -2.09
USP53-205ENST00000509769 TLN2Q9Y4G6 2542 aa1.98□□□□□ -2.09
USP53-205ENST00000509769 FLNCQ14315 2725 aa1.97□□□□□ -2.09
USP53-205ENST00000509769 CFAP47Q6ZTR5 3102 aa1.97□□□□□ -2.09
USP53-205ENST00000509769 NBEAL1Q6ZS30 2694 aa1.97□□□□□ -2.09
USP53-205ENST00000509769 A0A1B0GVY2 172 aa1.97□□□□□ -2.09
USP53-205ENST00000509769 H0YAA0 97 aa1.96□□□□□ -2.1
USP53-205ENST00000509769 AKAP9Q99996 3911 aa1.95□□□□□ -2.1
USP53-205ENST00000509769 HERC2O95714 4834 aa1.95□□□□□ -2.1
USP53-205ENST00000509769 MGAM2Q2M2H8 2515 aa1.94□□□□□ -2.1
USP53-205ENST00000509769 M0R2T5 61 aa1.94□□□□□ -2.1
USP53-205ENST00000509769 Q6ZRN7 208 aaPredicted RBP1.94□□□□□ -2.1
USP53-205ENST00000509769 FRYQ5TBA9 3013 aa1.94□□□□□ -2.1
USP53-205ENST00000509769 DNAH3Q8TD57 4116 aa1.94□□□□□ -2.1
USP53-205ENST00000509769 NOTCH1P46531 2555 aa1.94□□□□□ -2.1
USP53-205ENST00000509769 KALRNO60229 2985 aa1.93□□□□□ -2.1
USP53-205ENST00000509769 KRTAP13-1Q8IUC0 172 aa1.93□□□□□ -2.1
USP53-205ENST00000509769 DNAH1Q9P2D7 4330 aa1.93□□□□□ -2.1
USP53-205ENST00000509769 NBEAQ8NFP9 2946 aa1.93□□□□□ -2.1
USP53-205ENST00000509769 BRCA2P51587 3418 aa1.92□□□□□ -2.1
USP53-205ENST00000509769 CELSR2Q9HCU4 2923 aa1.92□□□□□ -2.1
USP53-205ENST00000509769 KRTAP9-2Q9BYQ4 174 aa1.91□□□□□ -2.1
USP53-205ENST00000509769 DMXL2Q8TDJ6 3036 aa1.91□□□□□ -2.1
USP53-205ENST00000509769 C5orf42Q9H799 3197 aa1.9□□□□□ -2.11
USP53-205ENST00000509769 ANK3Q12955 4377 aaKnown RBP1.9□□□□□ -2.11
USP53-205ENST00000509769 SPEGQ15772 3267 aa1.9□□□□□ -2.11
USP53-205ENST00000509769 KRTAP13-4Q3LI77 160 aa1.9□□□□□ -2.11
USP53-205ENST00000509769 ZZEF1O43149 2961 aa1.89□□□□□ -2.11
USP53-205ENST00000509769 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.89□□□□□ -2.11
USP53-205ENST00000509769 KRTAP15-1Q3LI76 137 aa1.89□□□□□ -2.11
USP53-205ENST00000509769 RYR2Q92736 4967 aa1.89□□□□□ -2.11
USP53-205ENST00000509769 LRBAP50851 2863 aa1.88□□□□□ -2.11
USP53-205ENST00000509769 PCLOQ9Y6V0 5065 aa1.88□□□□□ -2.11
USP53-205ENST00000509769 FRYLO94915 3013 aa1.88□□□□□ -2.11
USP53-205ENST00000509769 LCE2CQ5TA81 110 aa1.87□□□□□ -2.11
USP53-205ENST00000509769 MXRA5Q9NR99 2828 aa1.87□□□□□ -2.11
USP53-205ENST00000509769 UTP20O75691 2785 aaKnown RBP1.87□□□□□ -2.11
USP53-205ENST00000509769 VCANP13611 3396 aa1.87□□□□□ -2.11
USP53-205ENST00000509769 FAT3Q8TDW7 4589 aa1.87□□□□□ -2.11
USP53-205ENST00000509769 MUC3AQ02505 3323 aa1.86□□□□□ -2.11
USP53-205ENST00000509769 NIPBLQ6KC79 2804 aaeCLIP1.86□□□□□ -2.11
USP53-205ENST00000509769 KRTAP10-8P60410 259 aa1.86□□□□□ -2.11
USP53-205ENST00000509769 MEGF8Q7Z7M0 2845 aa1.86□□□□□ -2.11
USP53-205ENST00000509769 KRTAP13-2Q52LG2 175 aa1.86□□□□□ -2.11
USP53-205ENST00000509769 LRP1BQ9NZR2 4599 aa1.85□□□□□ -2.11
USP53-205ENST00000509769 CDH23Q9H251 3354 aa1.84□□□□□ -2.11
USP53-205ENST00000509769 SMR3BP02814 79 aaPredicted RBP1.84□□□□□ -2.11
USP53-205ENST00000509769 PKD1L1Q8TDX9 2849 aa1.84□□□□□ -2.11
USP53-205ENST00000509769 KRTAP4-5Q9BYR2 181 aa1.84□□□□□ -2.12
USP53-205ENST00000509769 CENPEQ02224 2701 aa1.84□□□□□ -2.12
USP53-205ENST00000509769 DNAH14Q0VDD8 3507 aa1.84□□□□□ -2.12
USP53-205ENST00000509769 WDFY4Q6ZS81 3184 aa1.83□□□□□ -2.12
USP53-205ENST00000509769 KRTAP13-3Q3SY46 172 aa1.83□□□□□ -2.12
USP53-205ENST00000509769 MAP1AP78559 2803 aaPredicted RBP1.83□□□□□ -2.12
USP53-205ENST00000509769 BSNQ9UPA5 3926 aa1.83□□□□□ -2.12
USP53-205ENST00000509769 CRCT1Q9UGL9 99 aa1.83□□□□□ -2.12
USP53-205ENST00000509769 MGAQ8IWI9 3026 aa1.82□□□□□ -2.12
USP53-205ENST00000509769 KRTAP12-2P59991 146 aa1.82□□□□□ -2.12
USP53-205ENST00000509769 TPRXLQ17RH7 258 aa1.81□□□□□ -2.12
USP53-205ENST00000509769 KRTAP4-8Q9BYQ9 185 aa1.81□□□□□ -2.12
USP53-205ENST00000509769 KIAA1109Q2LD37 5005 aa1.81□□□□□ -2.12
USP53-205ENST00000509769 LORP23490 312 aaPredicted RBP1.8□□□□□ -2.12
USP53-205ENST00000509769 XP32Q5T750 250 aa1.8□□□□□ -2.12
USP53-205ENST00000509769 XIRP2A4UGR9 3374 aa1.8□□□□□ -2.12
USP53-205ENST00000509769 KRTAP7-1Q8IUC3 87 aa1.79□□□□□ -2.12
USP53-205ENST00000509769 ZFHX3Q15911 3703 aa1.79□□□□□ -2.12
USP53-205ENST00000509769 TRIOO75962 3097 aa1.79□□□□□ -2.12
USP53-205ENST00000509769 KRTAP10-1P60331 282 aa1.79□□□□□ -2.12
USP53-205ENST00000509769 DNAH6Q9C0G6 4158 aa1.79□□□□□ -2.12
USP53-205ENST00000509769 DNAH11Q96DT5 4516 aa1.78□□□□□ -2.12
USP53-205ENST00000509769 PRKDCP78527 4128 aaKnown RBP1.78□□□□□ -2.12
USP53-205ENST00000509769 KRTAP4-12Q9BQ66 201 aa1.78□□□□□ -2.12
USP53-205ENST00000509769 KRTAP1-5Q9BYS1 174 aa1.78□□□□□ -2.12
USP53-205ENST00000509769 ADGRG4Q8IZF6 3080 aa1.78□□□□□ -2.12
USP53-205ENST00000509769 KRTAP12-1P59990 96 aa1.78□□□□□ -2.13
USP53-205ENST00000509769 KRTAP9-7A8MTY7 169 aa1.76□□□□□ -2.13
USP53-205ENST00000509769 KRTAP9-9Q9BYP9 154 aa1.76□□□□□ -2.13
USP53-205ENST00000509769 KRTAP9-4Q9BYQ2 154 aa1.76□□□□□ -2.13
USP53-205ENST00000509769 MYO15AQ9UKN7 3530 aa1.76□□□□□ -2.13
USP53-205ENST00000509769 RYR1P21817 5038 aa1.76□□□□□ -2.13
USP53-205ENST00000509769 DYNC1H1Q14204 4646 aaKnown RBP1.76□□□□□ -2.13
USP53-205ENST00000509769 EPPK1P58107 5090 aaKnown RBP1.75□□□□□ -2.13
USP53-205ENST00000509769 COL12A1Q99715 3063 aa1.75□□□□□ -2.13
USP53-205ENST00000509769 DNAH10Q8IVF4 4471 aa1.75□□□□□ -2.13
USP53-205ENST00000509769 DNAH7Q8WXX0 4024 aa1.75□□□□□ -2.13
USP53-205ENST00000509769 NBEAL2Q6ZNJ1 2754 aa1.74□□□□□ -2.13
USP53-205ENST00000509769 SACSQ9NZJ4 4579 aa1.74□□□□□ -2.13
USP53-205ENST00000509769 FLG2Q5D862 2391 aaPredicted RBP1.74□□□□□ -2.13
USP53-205ENST00000509769 SMG1Q96Q15 3661 aaKnown RBP1.74□□□□□ -2.13
USP53-205ENST00000509769 TGP01266 2768 aa1.74□□□□□ -2.13
USP53-205ENST00000509769 DNAH9Q9NYC9 4486 aa1.74□□□□□ -2.13
USP53-205ENST00000509769 TENM1Q9UKZ4 2725 aa1.74□□□□□ -2.13
USP53-205ENST00000509769 KRTAP19-4Q3LI73 84 aa1.73□□□□□ -2.13
USP53-205ENST00000509769 TENM2Q9NT68 2774 aa1.73□□□□□ -2.13
USP53-205ENST00000509769 KMT2CQ8NEZ4 4911 aaKnown RBP1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms