RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 GOLGB1Q14789 3259 aaKnown RBP0.65□□□□□ -2.31
NUP54-208ENST00000508604 ZZEF1O43149 2961 aa0.65□□□□□ -2.31
NUP54-208ENST00000508604 TNRC18O15417 2968 aaPredicted RBP0.64□□□□□ -2.31
NUP54-208ENST00000508604 TENM3Q9P273 2699 aa0.64□□□□□ -2.31
NUP54-208ENST00000508604 CFAP54Q96N23 3096 aa0.64□□□□□ -2.31
NUP54-208ENST00000508604 OTOGQ6ZRI0 2925 aa0.64□□□□□ -2.31
NUP54-208ENST00000508604 CEP250Q9BV73 2442 aa0.64□□□□□ -2.31
NUP54-208ENST00000508604 PIEZO2Q9H5I5 2752 aa0.64□□□□□ -2.31
NUP54-208ENST00000508604 CACNA1HO95180 2353 aa0.63□□□□□ -2.31
NUP54-208ENST00000508604 RPS29P62273 56 aaKnown RBP0.63□□□□□ -2.31
NUP54-208ENST00000508604 PCNTO95613 3336 aa0.63□□□□□ -2.31
NUP54-208ENST00000508604 CFAP47Q6ZTR5 3102 aa0.63□□□□□ -2.31
NUP54-208ENST00000508604 CELSR2Q9HCU4 2923 aa0.63□□□□□ -2.31
NUP54-208ENST00000508604 VPS13AQ96RL7 3174 aa0.63□□□□□ -2.31
NUP54-208ENST00000508604 ASH1LQ9NR48 2969 aaKnown RBP0.63□□□□□ -2.31
NUP54-208ENST00000508604 RANBP2P49792 3224 aaKnown RBP0.63□□□□□ -2.31
NUP54-208ENST00000508604 PRUNE2Q8WUY3 3088 aa0.63□□□□□ -2.31
NUP54-208ENST00000508604 ZNF462Q96JM2 2506 aa0.62□□□□□ -2.31
NUP54-208ENST00000508604 PRRC2CQ9Y520 2896 aaKnown RBP0.62□□□□□ -2.31
NUP54-208ENST00000508604 CENPFP49454 3210 aa0.62□□□□□ -2.31
NUP54-208ENST00000508604 MKI67P46013 3256 aaKnown RBP0.62□□□□□ -2.31
NUP54-208ENST00000508604 WDFY4Q6ZS81 3184 aa0.62□□□□□ -2.31
NUP54-208ENST00000508604 DCHS1Q96JQ0 3298 aa0.62□□□□□ -2.31
NUP54-208ENST00000508604 EP300Q09472 2414 aaPredicted RBP0.62□□□□□ -2.31
NUP54-208ENST00000508604 REV3LO60673 3130 aa0.61□□□□□ -2.31
NUP54-208ENST00000508604 NBEAQ8NFP9 2946 aa0.61□□□□□ -2.31
NUP54-208ENST00000508604 COL6A5A8TX70 2615 aa0.61□□□□□ -2.31
NUP54-208ENST00000508604 UTRNP46939 3433 aa0.61□□□□□ -2.31
NUP54-208ENST00000508604 HTN3P15516 51 aa0.61□□□□□ -2.31
NUP54-208ENST00000508604 NCOR1O75376 2440 aa0.61□□□□□ -2.31
NUP54-208ENST00000508604 DSPP15924 2871 aaKnown RBP0.61□□□□□ -2.31
NUP54-208ENST00000508604 SZT2Q5T011 3432 aa0.61□□□□□ -2.31
NUP54-208ENST00000508604 UBR5O95071 2799 aaPredicted RBP0.61□□□□□ -2.31
NUP54-208ENST00000508604 SPEGQ15772 3267 aa0.6□□□□□ -2.31
NUP54-208ENST00000508604 GVINP1Q7Z2Y8 2422 aa0.6□□□□□ -2.31
NUP54-208ENST00000508604 NCOR2Q9Y618 2525 aa0.6□□□□□ -2.31
NUP54-208ENST00000508604 FRYLO94915 3013 aa0.6□□□□□ -2.31
NUP54-208ENST00000508604 BOD1L1Q8NFC6 3051 aa0.6□□□□□ -2.31
NUP54-208ENST00000508604 TNP1P09430 55 aa0.6□□□□□ -2.31
NUP54-208ENST00000508604 DEFB135Q30KP9 77 aa0.6□□□□□ -2.31
NUP54-208ENST00000508604 FAM186AA6NE01 2351 aa0.6□□□□□ -2.31
NUP54-208ENST00000508604 F8P00451 2351 aa0.6□□□□□ -2.31
NUP54-208ENST00000508604 CELSR1Q9NYQ6 3014 aa0.6□□□□□ -2.31
NUP54-208ENST00000508604 DMXL1Q9Y485 3027 aa0.6□□□□□ -2.31
NUP54-208ENST00000508604 JMJD1CQ15652 2540 aa0.6□□□□□ -2.31
NUP54-208ENST00000508604 RYR1P21817 5038 aa0.6□□□□□ -2.31
NUP54-208ENST00000508604 VWFP04275 2813 aa0.6□□□□□ -2.31
NUP54-208ENST00000508604 C2CD3Q4AC94 2353 aa0.6□□□□□ -2.31
NUP54-208ENST00000508604 C9orf92A6NGG3 77 aa0.59□□□□□ -2.31
NUP54-208ENST00000508604 DEFB4AO15263 64 aa0.59□□□□□ -2.31
NUP54-208ENST00000508604 RYR2Q92736 4967 aa0.59□□□□□ -2.31
NUP54-208ENST00000508604 UNC80Q8N2C7 3258 aa0.59□□□□□ -2.31
NUP54-208ENST00000508604 NBASA2RRP1 2371 aa0.59□□□□□ -2.31
NUP54-208ENST00000508604 ABCA2Q9BZC7 2435 aa0.59□□□□□ -2.31
NUP54-208ENST00000508604 PTPN13Q12923 2485 aa0.59□□□□□ -2.31
NUP54-208ENST00000508604 C5orf42Q9H799 3197 aa0.59□□□□□ -2.31
NUP54-208ENST00000508604 CCDC168Q8NDH2 2452 aa0.59□□□□□ -2.32
NUP54-208ENST00000508604 CHD6Q8TD26 2715 aa0.59□□□□□ -2.32
NUP54-208ENST00000508604 TRIOO75962 3097 aa0.59□□□□□ -2.32
NUP54-208ENST00000508604 KMT2CQ8NEZ4 4911 aaKnown RBP0.58□□□□□ -2.32
NUP54-208ENST00000508604 KALRNO60229 2985 aa0.58□□□□□ -2.32
NUP54-208ENST00000508604 ITPR1Q14643 2758 aa0.58□□□□□ -2.32
NUP54-208ENST00000508604 SPG11Q96JI7 2443 aa0.58□□□□□ -2.32
NUP54-208ENST00000508604 HTTP42858 3142 aa0.57□□□□□ -2.32
NUP54-208ENST00000508604 ANKHD1Q8IWZ3 2542 aaKnown RBP0.57□□□□□ -2.32
NUP54-208ENST00000508604 NAV2Q8IVL1 2488 aa0.57□□□□□ -2.32
NUP54-208ENST00000508604 COL12A1Q99715 3063 aa0.57□□□□□ -2.32
NUP54-208ENST00000508604 ZFHX4Q86UP3 3567 aa0.57□□□□□ -2.32
NUP54-208ENST00000508604 SSPOA2VEC9 5147 aa0.57□□□□□ -2.32
NUP54-208ENST00000508604 SPTBN5Q9NRC6 3674 aaKnown RBP0.57□□□□□ -2.32
NUP54-208ENST00000508604 HIVEP3Q5T1R4 2406 aa0.56□□□□□ -2.32
NUP54-208ENST00000508604 MAP1AP78559 2803 aaPredicted RBP0.56□□□□□ -2.32
NUP54-208ENST00000508604 SMR3AQ99954 134 aa0.56□□□□□ -2.32
NUP54-208ENST00000508604 NBPF19A0A087WUL8 3843 aa0.56□□□□□ -2.32
NUP54-208ENST00000508604 LRBAP50851 2863 aa0.56□□□□□ -2.32
NUP54-208ENST00000508604 DMBT1Q9UGM3 2413 aaPredicted RBP0.56□□□□□ -2.32
NUP54-208ENST00000508604 SRRM2Q9UQ35 2752 aaKnown RBP0.56□□□□□ -2.32
NUP54-208ENST00000508604 CHD9Q3L8U1 2897 aa0.56□□□□□ -2.32
NUP54-208ENST00000508604 MEGF8Q7Z7M0 2845 aa0.56□□□□□ -2.32
NUP54-208ENST00000508604 AKAP9Q99996 3911 aa0.56□□□□□ -2.32
NUP54-208ENST00000508604 EP400Q96L91 3159 aa0.56□□□□□ -2.32
NUP54-208ENST00000508604 CREBBPQ92793 2442 aa0.56□□□□□ -2.32
NUP54-208ENST00000508604 LAMA1P25391 3075 aa0.56□□□□□ -2.32
NUP54-208ENST00000508604 FRYQ5TBA9 3013 aa0.56□□□□□ -2.32
NUP54-208ENST00000508604 CRYBG3Q68DQ2 2970 aa0.55□□□□□ -2.32
NUP54-208ENST00000508604 TRANK1O15050 2925 aa0.55□□□□□ -2.32
NUP54-208ENST00000508604 FREM2Q5SZK8 3169 aa0.55□□□□□ -2.32
NUP54-208ENST00000508604 CEP290O15078 2479 aa0.55□□□□□ -2.32
NUP54-208ENST00000508604 CELSR3Q9NYQ7 3312 aa0.55□□□□□ -2.32
NUP54-208ENST00000508604 RELNP78509 3460 aa0.55□□□□□ -2.32
NUP54-208ENST00000508604 AKAP13Q12802 2813 aa0.55□□□□□ -2.32
NUP54-208ENST00000508604 DNAH12Q6ZR08 3092 aa0.55□□□□□ -2.32
NUP54-208ENST00000508604 LAMA2P24043 3122 aaKnown RBP0.55□□□□□ -2.32
NUP54-208ENST00000508604 SONP18583 2426 aaKnown RBP0.54□□□□□ -2.32
NUP54-208ENST00000508604 ATMQ13315 3056 aa0.54□□□□□ -2.32
NUP54-208ENST00000508604 USP34Q70CQ2 3546 aa0.54□□□□□ -2.32
NUP54-208ENST00000508604 DMDP11532 3685 aa0.54□□□□□ -2.32
NUP54-208ENST00000508604 SETD2Q9BYW2 2564 aaPredicted RBP0.54□□□□□ -2.32
NUP54-208ENST00000508604 M0R2T5 61 aa0.53□□□□□ -2.32
NUP54-208ENST00000508604 KRTAP2-3P0C7H8 128 aa0.53□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms