RNA–Protein interactions for RNA: ENST00000503248.1

PHF3-206, Transcript of PHD finger protein 3, humanhuman

TSL 3

Gene PHF3, Length 529 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-206ENST00000503248 VPS13AQ96RL7 3174 aa0.56□□□□□ -2.32
PHF3-206ENST00000503248 A0A096LNI7 61 aa0.56□□□□□ -2.32
PHF3-206ENST00000503248 M0QZ58 72 aa0.56□□□□□ -2.32
PHF3-206ENST00000503248 APLNQ9ULZ1 77 aa0.56□□□□□ -2.32
PHF3-206ENST00000503248 RANBP2P49792 3224 aaKnown RBP0.56□□□□□ -2.32
PHF3-206ENST00000503248 CFAP54Q96N23 3096 aa0.56□□□□□ -2.32
PHF3-206ENST00000503248 ZZEF1O43149 2961 aa0.55□□□□□ -2.32
PHF3-206ENST00000503248 SPG11Q96JI7 2443 aa0.55□□□□□ -2.32
PHF3-206ENST00000503248 SPART-AS1P0CW21 52 aa0.55□□□□□ -2.32
PHF3-206ENST00000503248 F8P00451 2351 aa0.55□□□□□ -2.32
PHF3-206ENST00000503248 HIVEP3Q5T1R4 2406 aa0.55□□□□□ -2.32
PHF3-206ENST00000503248 PTPN13Q12923 2485 aa0.55□□□□□ -2.32
PHF3-206ENST00000503248 NCOR2Q9Y618 2525 aa0.54□□□□□ -2.32
PHF3-206ENST00000503248 A0A0D9SG42 100 aa0.54□□□□□ -2.32
PHF3-206ENST00000503248 SPINK6Q6UWN8 80 aa0.54□□□□□ -2.32
PHF3-206ENST00000503248 COL6A5A8TX70 2615 aa0.54□□□□□ -2.32
PHF3-206ENST00000503248 PRRC2CQ9Y520 2896 aaKnown RBP0.54□□□□□ -2.32
PHF3-206ENST00000503248 CELSR2Q9HCU4 2923 aa0.54□□□□□ -2.32
PHF3-206ENST00000503248 CCDC168Q8NDH2 2452 aa0.54□□□□□ -2.32
PHF3-206ENST00000503248 ZNF462Q96JM2 2506 aa0.54□□□□□ -2.32
PHF3-206ENST00000503248 PRUNE2Q8WUY3 3088 aa0.53□□□□□ -2.32
PHF3-206ENST00000503248 SPTBN5Q9NRC6 3674 aaKnown RBP0.53□□□□□ -2.32
PHF3-206ENST00000503248 OTOGQ6ZRI0 2925 aa0.53□□□□□ -2.32
PHF3-206ENST00000503248 DNAH14Q0VDD8 3507 aa0.53□□□□□ -2.32
PHF3-206ENST00000503248 USP34Q70CQ2 3546 aa0.53□□□□□ -2.32
PHF3-206ENST00000503248 RPS29P62273 56 aaKnown RBP0.53□□□□□ -2.32
PHF3-206ENST00000503248 ZFHX4Q86UP3 3567 aa0.53□□□□□ -2.32
PHF3-206ENST00000503248 NBPF19A0A087WUL8 3843 aa0.53□□□□□ -2.33
PHF3-206ENST00000503248 REV3LO60673 3130 aa0.53□□□□□ -2.33
PHF3-206ENST00000503248 WDFY4Q6ZS81 3184 aa0.53□□□□□ -2.33
PHF3-206ENST00000503248 NAV2Q8IVL1 2488 aa0.53□□□□□ -2.33
PHF3-206ENST00000503248 DNAH1Q9P2D7 4330 aa0.52□□□□□ -2.33
PHF3-206ENST00000503248 AKAP9Q99996 3911 aa0.52□□□□□ -2.33
PHF3-206ENST00000503248 ASH1LQ9NR48 2969 aaKnown RBP0.52□□□□□ -2.33
PHF3-206ENST00000503248 ITPR1Q14643 2758 aa0.52□□□□□ -2.33
PHF3-206ENST00000503248 PIEZO2Q9H5I5 2752 aa0.52□□□□□ -2.33
PHF3-206ENST00000503248 BOD1L1Q8NFC6 3051 aa0.51□□□□□ -2.33
PHF3-206ENST00000503248 HTTP42858 3142 aa0.51□□□□□ -2.33
PHF3-206ENST00000503248 XIRP2A4UGR9 3374 aa0.51□□□□□ -2.33
PHF3-206ENST00000503248 UBR5O95071 2799 aaPredicted RBP0.51□□□□□ -2.33
PHF3-206ENST00000503248 APCP25054 2843 aa0.51□□□□□ -2.33
PHF3-206ENST00000503248 RELNP78509 3460 aa0.51□□□□□ -2.33
PHF3-206ENST00000503248 DEFB135Q30KP9 77 aa0.51□□□□□ -2.33
PHF3-206ENST00000503248 CREBBPQ92793 2442 aa0.51□□□□□ -2.33
PHF3-206ENST00000503248 DNAH11Q96DT5 4516 aa0.51□□□□□ -2.33
PHF3-206ENST00000503248 CSMD1Q96PZ7 3565 aa0.51□□□□□ -2.33
PHF3-206ENST00000503248 SMR3AQ99954 134 aa0.51□□□□□ -2.33
PHF3-206ENST00000503248 DMBT1Q9UGM3 2413 aaPredicted RBP0.51□□□□□ -2.33
PHF3-206ENST00000503248 USP24Q9UPU5 2620 aa0.51□□□□□ -2.33
PHF3-206ENST00000503248 EP400Q96L91 3159 aa0.51□□□□□ -2.33
PHF3-206ENST00000503248 FRYLO94915 3013 aa0.51□□□□□ -2.33
PHF3-206ENST00000503248 NBEAQ8NFP9 2946 aa0.51□□□□□ -2.33
PHF3-206ENST00000503248 JMJD1CQ15652 2540 aa0.5□□□□□ -2.33
PHF3-206ENST00000503248 DOPEY1Q5JWR5 2465 aa0.5□□□□□ -2.33
PHF3-206ENST00000503248 SONP18583 2426 aaKnown RBP0.5□□□□□ -2.33
PHF3-206ENST00000503248 WDFY3Q8IZQ1 3526 aa0.5□□□□□ -2.33
PHF3-206ENST00000503248 CELSR1Q9NYQ6 3014 aa0.5□□□□□ -2.33
PHF3-206ENST00000503248 SETD2Q9BYW2 2564 aaPredicted RBP0.5□□□□□ -2.33
PHF3-206ENST00000503248 DEFB4AO15263 64 aa0.5□□□□□ -2.33
PHF3-206ENST00000503248 HTN3P15516 51 aa0.5□□□□□ -2.33
PHF3-206ENST00000503248 SPTAN1Q13813 2472 aaKnown RBP0.5□□□□□ -2.33
PHF3-206ENST00000503248 TTC28Q96AY4 2481 aa0.5□□□□□ -2.33
PHF3-206ENST00000503248 DMDP11532 3685 aa0.5□□□□□ -2.33
PHF3-206ENST00000503248 MYCBP2O75592 4640 aa0.5□□□□□ -2.33
PHF3-206ENST00000503248 ANK3Q12955 4377 aaKnown RBP0.5□□□□□ -2.33
PHF3-206ENST00000503248 C5orf42Q9H799 3197 aa0.5□□□□□ -2.33
PHF3-206ENST00000503248 DMXL1Q9Y485 3027 aa0.5□□□□□ -2.33
PHF3-206ENST00000503248 DNAH10Q8IVF4 4471 aa0.5□□□□□ -2.33
PHF3-206ENST00000503248 DNAH8Q96JB1 4490 aa0.5□□□□□ -2.33
PHF3-206ENST00000503248 DNAH17Q9UFH2 4485 aa0.5□□□□□ -2.33
PHF3-206ENST00000503248 VCANP13611 3396 aa0.49□□□□□ -2.33
PHF3-206ENST00000503248 CELSR3Q9NYQ7 3312 aa0.49□□□□□ -2.33
PHF3-206ENST00000503248 HUWE1Q7Z6Z7 4374 aaKnown RBP0.49□□□□□ -2.33
PHF3-206ENST00000503248 DSPP15924 2871 aaKnown RBP0.49□□□□□ -2.33
PHF3-206ENST00000503248 CHD6Q8TD26 2715 aa0.49□□□□□ -2.33
PHF3-206ENST00000503248 KRTAP21-1Q3LI58 79 aa0.49□□□□□ -2.33
PHF3-206ENST00000503248 ANKHD1Q8IWZ3 2542 aaKnown RBP0.49□□□□□ -2.33
PHF3-206ENST00000503248 RIF1Q5UIP0 2472 aaKnown RBP0.49□□□□□ -2.33
PHF3-206ENST00000503248 PKD1L2Q7Z442 2459 aa0.49□□□□□ -2.33
PHF3-206ENST00000503248 TRIOO75962 3097 aa0.49□□□□□ -2.33
PHF3-206ENST00000503248 DNAH2Q9P225 4427 aa0.49□□□□□ -2.33
PHF3-206ENST00000503248 LAMA5O15230 3695 aa0.49□□□□□ -2.33
PHF3-206ENST00000503248 FRAS1Q86XX4 4008 aa0.48□□□□□ -2.33
PHF3-206ENST00000503248 KALRNO60229 2985 aa0.48□□□□□ -2.33
PHF3-206ENST00000503248 CEP290O15078 2479 aa0.48□□□□□ -2.33
PHF3-206ENST00000503248 FREM2Q5SZK8 3169 aa0.48□□□□□ -2.33
PHF3-206ENST00000503248 LAMA2P24043 3122 aaKnown RBP0.48□□□□□ -2.33
PHF3-206ENST00000503248 COL12A1Q99715 3063 aa0.48□□□□□ -2.33
PHF3-206ENST00000503248 C9orf92A6NGG3 77 aa0.48□□□□□ -2.33
PHF3-206ENST00000503248 TNP1P09430 55 aa0.48□□□□□ -2.33
PHF3-206ENST00000503248 LAMA1P25391 3075 aa0.48□□□□□ -2.33
PHF3-206ENST00000503248 LAMA3Q16787 3333 aa0.48□□□□□ -2.33
PHF3-206ENST00000503248 SPENQ96T58 3664 aaKnown RBP0.48□□□□□ -2.33
PHF3-206ENST00000503248 DYNC2H1Q8NCM8 4307 aaKnown RBP0.47□□□□□ -2.33
PHF3-206ENST00000503248 FRYQ5TBA9 3013 aa0.47□□□□□ -2.33
PHF3-206ENST00000503248 LOC400499M0QZD8 3231 aa0.47□□□□□ -2.33
PHF3-206ENST00000503248 CHD9Q3L8U1 2897 aa0.47□□□□□ -2.33
PHF3-206ENST00000503248 KRTAP2-3P0C7H8 128 aa0.47□□□□□ -2.33
PHF3-206ENST00000503248 KRTAP8-1Q8IUC2 63 aa0.47□□□□□ -2.33
PHF3-206ENST00000503248 KRTAP2-4Q9BYR9 128 aa0.47□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms