RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 MXRA5Q9NR99 2828 aa6.23□□□□□ -1.41
LIMCH1-205ENST00000503057 DCHS1Q96JQ0 3298 aa6.23□□□□□ -1.41
LIMCH1-205ENST00000503057 NIPBLQ6KC79 2804 aaeCLIP6.23□□□□□ -1.41
LIMCH1-205ENST00000503057 COX6B2Q6YFQ2 88 aa6.21□□□□□ -1.41
LIMCH1-205ENST00000503057 BSNQ9UPA5 3926 aa6.21□□□□□ -1.42
LIMCH1-205ENST00000503057 BAHCC1Q9P281 2608 aa6.21□□□□□ -1.42
LIMCH1-205ENST00000503057 RPS29P62273 56 aaKnown RBP6.21□□□□□ -1.42
LIMCH1-205ENST00000503057 NBEAL1Q6ZS30 2694 aa6.2□□□□□ -1.42
LIMCH1-205ENST00000503057 ASH1LQ9NR48 2969 aaKnown RBP6.2□□□□□ -1.42
LIMCH1-205ENST00000503057 CSMD1Q96PZ7 3565 aa6.19□□□□□ -1.42
LIMCH1-205ENST00000503057 A0A0D9SG42 100 aa6.17□□□□□ -1.42
LIMCH1-205ENST00000503057 NF1P21359 2839 aa6.17□□□□□ -1.42
LIMCH1-205ENST00000503057 KRTAP13-2Q52LG2 175 aa6.17□□□□□ -1.42
LIMCH1-205ENST00000503057 Q6ZSA8 131 aa6.17□□□□□ -1.42
LIMCH1-205ENST00000503057 Q5VSD8 79 aa6.15□□□□□ -1.43
LIMCH1-205ENST00000503057 S4R3F8 94 aa6.13□□□□□ -1.43
LIMCH1-205ENST00000503057 PDZD2O15018 2839 aa6.13□□□□□ -1.43
LIMCH1-205ENST00000503057 SPENQ96T58 3664 aaKnown RBP6.09□□□□□ -1.43
LIMCH1-205ENST00000503057 KRTAP21-3Q3LHN1 58 aa6.08□□□□□ -1.44
LIMCH1-205ENST00000503057 LINC01554Q52M75 96 aa6.08□□□□□ -1.44
LIMCH1-205ENST00000503057 CSAG1Q6PB30 78 aa6.07□□□□□ -1.44
LIMCH1-205ENST00000503057 ANK3Q12955 4377 aaKnown RBP6.05□□□□□ -1.44
LIMCH1-205ENST00000503057 H1FX-AS1Q4G0G2 97 aa6.05□□□□□ -1.44
LIMCH1-205ENST00000503057 SPATA8Q6RVD6 105 aa6.04□□□□□ -1.44
LIMCH1-205ENST00000503057 PRAC1Q96KF2 57 aa6.03□□□□□ -1.44
LIMCH1-205ENST00000503057 CELSR1Q9NYQ6 3014 aa6.03□□□□□ -1.44
LIMCH1-205ENST00000503057 TENM4Q6N022 2769 aa6.03□□□□□ -1.44
LIMCH1-205ENST00000503057 SVEP1Q4LDE5 3571 aa6.02□□□□□ -1.45
LIMCH1-205ENST00000503057 STAB2Q8WWQ8 2551 aa5.99□□□□□ -1.45
LIMCH1-205ENST00000503057 KRTAP1-4P0C5Y4 121 aa5.98□□□□□ -1.45
LIMCH1-205ENST00000503057 A6NN06 94 aa5.98□□□□□ -1.45
LIMCH1-205ENST00000503057 H3BS24 57 aa5.98□□□□□ -1.45
LIMCH1-205ENST00000503057 RPL37P61927 97 aaKnown RBP5.97□□□□□ -1.45
LIMCH1-205ENST00000503057 NBPF19A0A087WUL8 3843 aa5.97□□□□□ -1.45
LIMCH1-205ENST00000503057 SEC61BP60468 96 aaKnown RBP5.97□□□□□ -1.45
LIMCH1-205ENST00000503057 CAMK2N1Q7Z7J9 78 aa5.94□□□□□ -1.46
LIMCH1-205ENST00000503057 A8MUU9 505 aa5.94□□□□□ -1.46
LIMCH1-205ENST00000503057 C20orf166-AS1Q96NR2 134 aa5.93□□□□□ -1.46
LIMCH1-205ENST00000503057 TENM3Q9P273 2699 aa5.93□□□□□ -1.46
LIMCH1-205ENST00000503057 ROMO1P60602 79 aa5.92□□□□□ -1.46
LIMCH1-205ENST00000503057 R4GN34 69 aa5.9□□□□□ -1.46
LIMCH1-205ENST00000503057 A8MU10 97 aa5.9□□□□□ -1.46
LIMCH1-205ENST00000503057 OTOGQ6ZRI0 2925 aa5.9□□□□□ -1.47
LIMCH1-205ENST00000503057 TENM1Q9UKZ4 2725 aa5.89□□□□□ -1.47
LIMCH1-205ENST00000503057 LUZP6Q538Z0 58 aa5.89□□□□□ -1.47
LIMCH1-205ENST00000503057 KRTAP16-1A8MUX0 517 aa5.88□□□□□ -1.47
LIMCH1-205ENST00000503057 ADM2Q7Z4H4 148 aa5.86□□□□□ -1.47
LIMCH1-205ENST00000503057 CSMD2Q7Z408 3487 aa5.84□□□□□ -1.48
LIMCH1-205ENST00000503057 VWFP04275 2813 aa5.81□□□□□ -1.48
LIMCH1-205ENST00000503057 M0QZ58 72 aa5.81□□□□□ -1.48
LIMCH1-205ENST00000503057 KRTAP13-3Q3SY46 172 aa5.8□□□□□ -1.48
LIMCH1-205ENST00000503057 M0R2T5 61 aa5.79□□□□□ -1.48
LIMCH1-205ENST00000503057 DMBT1Q9UGM3 2413 aaPredicted RBP5.79□□□□□ -1.48
LIMCH1-205ENST00000503057 A0A0A0MQY5 61 aa5.78□□□□□ -1.48
LIMCH1-205ENST00000503057 KRTAP25-1Q3LHN0 102 aa5.74□□□□□ -1.49
LIMCH1-205ENST00000503057 VPS13CQ709C8 3753 aa5.73□□□□□ -1.49
LIMCH1-205ENST00000503057 XP32Q5T750 250 aa5.72□□□□□ -1.49
LIMCH1-205ENST00000503057 A0A1B0GVY2 172 aa5.7□□□□□ -1.5
LIMCH1-205ENST00000503057 FBN1P35555 2871 aaKnown RBP5.69□□□□□ -1.5
LIMCH1-205ENST00000503057 TRRAPQ9Y4A5 3859 aa5.68□□□□□ -1.5
LIMCH1-205ENST00000503057 AKAP9Q99996 3911 aa5.67□□□□□ -1.5
LIMCH1-205ENST00000503057 ZFHX3Q15911 3703 aa5.66□□□□□ -1.5
LIMCH1-205ENST00000503057 HUWE1Q7Z6Z7 4374 aaKnown RBP5.64□□□□□ -1.51
LIMCH1-205ENST00000503057 H0YAA0 97 aa5.64□□□□□ -1.51
LIMCH1-205ENST00000503057 TPRXLQ17RH7 258 aa5.61□□□□□ -1.51
LIMCH1-205ENST00000503057 PLAC4Q8WY50 150 aa5.6□□□□□ -1.51
LIMCH1-205ENST00000503057 ZNF469Q96JG9 3925 aaPredicted RBP5.6□□□□□ -1.51
LIMCH1-205ENST00000503057 CUBNO60494 3623 aa5.59□□□□□ -1.51
LIMCH1-205ENST00000503057 KRTAP10-8P60410 259 aa5.58□□□□□ -1.52
LIMCH1-205ENST00000503057 TENM2Q9NT68 2774 aa5.58□□□□□ -1.52
LIMCH1-205ENST00000503057 FLG2Q5D862 2391 aaPredicted RBP5.57□□□□□ -1.52
LIMCH1-205ENST00000503057 PKD1L1Q8TDX9 2849 aa5.57□□□□□ -1.52
LIMCH1-205ENST00000503057 TGP01266 2768 aa5.55□□□□□ -1.52
LIMCH1-205ENST00000503057 P0C880 135 aa5.43□□□□□ -1.54
LIMCH1-205ENST00000503057 KRTAP3-1Q9BYR8 98 aa5.43□□□□□ -1.54
LIMCH1-205ENST00000503057 TNP1P09430 55 aa5.41□□□□□ -1.54
LIMCH1-205ENST00000503057 DNAH9Q9NYC9 4486 aa5.4□□□□□ -1.54
LIMCH1-205ENST00000503057 PP632Q6XCG6 107 aa5.38□□□□□ -1.55
LIMCH1-205ENST00000503057 ALMS1Q8TCU4 4167 aa5.38□□□□□ -1.55
LIMCH1-205ENST00000503057 MEGF8Q7Z7M0 2845 aa5.38□□□□□ -1.55
LIMCH1-205ENST00000503057 C10orf95Q9H7T3 257 aa5.37□□□□□ -1.55
LIMCH1-205ENST00000503057 NDUFAF8A1L188 74 aa5.36□□□□□ -1.55
LIMCH1-205ENST00000503057 FBN3Q75N90 2809 aa5.33□□□□□ -1.56
LIMCH1-205ENST00000503057 SRRM2Q9UQ35 2752 aaKnown RBP5.31□□□□□ -1.56
LIMCH1-205ENST00000503057 KRTAP10-4P60372 401 aaPredicted RBP5.3□□□□□ -1.56
LIMCH1-205ENST00000503057 KRTAP12-2P59991 146 aa5.27□□□□□ -1.57
LIMCH1-205ENST00000503057 DNAH1Q9P2D7 4330 aa5.26□□□□□ -1.57
LIMCH1-205ENST00000503057 PLECQ15149 4684 aaKnown RBP5.23□□□□□ -1.57
LIMCH1-205ENST00000503057 KRTAP10-6P60371 365 aaPredicted RBP5.23□□□□□ -1.57
LIMCH1-205ENST00000503057 KRTAP12-1P59990 96 aa5.21□□□□□ -1.57
LIMCH1-205ENST00000503057 DNAH3Q8TD57 4116 aa5.21□□□□□ -1.58
LIMCH1-205ENST00000503057 VPS13DQ5THJ4 4388 aa5.21□□□□□ -1.58
LIMCH1-205ENST00000503057 MT1HL1P0DM35 61 aa5.2□□□□□ -1.58
LIMCH1-205ENST00000503057 DNAH10Q8IVF4 4471 aa5.19□□□□□ -1.58
LIMCH1-205ENST00000503057 KRTAP13-4Q3LI77 160 aa5.18□□□□□ -1.58
LIMCH1-205ENST00000503057 DNAH17Q9UFH2 4485 aa5.18□□□□□ -1.58
LIMCH1-205ENST00000503057 KRTAP3-3Q9BYR6 98 aa5.14□□□□□ -1.59
LIMCH1-205ENST00000503057 CSMD3Q7Z407 3707 aa5.13□□□□□ -1.59
LIMCH1-205ENST00000503057 ANK2Q01484 3957 aa5.13□□□□□ -1.59
LIMCH1-205ENST00000503057 CMYA5Q8N3K9 4069 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms