RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 SPANXA2-OT1Q8N9U9 137 aa6.54□□□□□ -1.36
CMSS1-208ENST00000496116 MRPL34Q9BQ48 92 aaKnown RBP6.53□□□□□ -1.36
CMSS1-208ENST00000496116 NDUFS5O43920 106 aa6.52□□□□□ -1.37
CMSS1-208ENST00000496116 KRTAP10-1P60331 282 aa6.52□□□□□ -1.37
CMSS1-208ENST00000496116 PRR4Q16378 134 aa6.52□□□□□ -1.37
CMSS1-208ENST00000496116 SPINK6Q6UWN8 80 aa6.52□□□□□ -1.37
CMSS1-208ENST00000496116 DNAH5Q8TE73 4624 aa6.51□□□□□ -1.37
CMSS1-208ENST00000496116 MPLKIPQ8TAP9 179 aa6.5□□□□□ -1.37
CMSS1-208ENST00000496116 ALMS1Q8TCU4 4167 aa6.5□□□□□ -1.37
CMSS1-208ENST00000496116 DNAH11Q96DT5 4516 aa6.49□□□□□ -1.37
CMSS1-208ENST00000496116 A0A087X002 238 aa6.46□□□□□ -1.37
CMSS1-208ENST00000496116 C8orf87E5RJ46 101 aa6.46□□□□□ -1.37
CMSS1-208ENST00000496116 NOTCH2NLQ7Z3S9 236 aa6.46□□□□□ -1.37
CMSS1-208ENST00000496116 LINC00336Q6ZUF6 198 aa6.46□□□□□ -1.38
CMSS1-208ENST00000496116 IGLV7-46A0A075B6I9 117 aa6.44□□□□□ -1.38
CMSS1-208ENST00000496116 Q1T7F1 81 aa6.44□□□□□ -1.38
CMSS1-208ENST00000496116 KRTAP13-2Q52LG2 175 aa6.44□□□□□ -1.38
CMSS1-208ENST00000496116 H3BS24 57 aa6.44□□□□□ -1.38
CMSS1-208ENST00000496116 PKD1P98161 4303 aa6.44□□□□□ -1.38
CMSS1-208ENST00000496116 PCOTHQ58A44 107 aa6.43□□□□□ -1.38
CMSS1-208ENST00000496116 HYDINQ4G0P3 5121 aa6.41□□□□□ -1.38
CMSS1-208ENST00000496116 LIMD2Q9BT23 127 aa6.41□□□□□ -1.38
CMSS1-208ENST00000496116 FAT2Q9NYQ8 4349 aa6.41□□□□□ -1.38
CMSS1-208ENST00000496116 LOC100996750A0A140TA64 210 aa6.41□□□□□ -1.38
CMSS1-208ENST00000496116 KRTAP4-6Q9BYQ5 205 aa6.41□□□□□ -1.38
CMSS1-208ENST00000496116 PRO0628Q9UI54 55 aa6.41□□□□□ -1.38
CMSS1-208ENST00000496116 LOC101927531A0A1B0GV80 90 aa6.4□□□□□ -1.38
CMSS1-208ENST00000496116 KRTAP1-4P0C5Y4 121 aa6.4□□□□□ -1.38
CMSS1-208ENST00000496116 LINC00313P59037 77 aa6.4□□□□□ -1.38
CMSS1-208ENST00000496116 V9GYY9 64 aa6.4□□□□□ -1.38
CMSS1-208ENST00000496116 C1orf195Q5TG92 126 aa6.39□□□□□ -1.39
CMSS1-208ENST00000496116 PLA2G1BP04054 148 aaKnown RBP6.38□□□□□ -1.39
CMSS1-208ENST00000496116 LRP1BQ9NZR2 4599 aa6.37□□□□□ -1.39
CMSS1-208ENST00000496116 BRK1Q8WUW1 75 aa6.37□□□□□ -1.39
CMSS1-208ENST00000496116 COA5Q86WW8 74 aa6.36□□□□□ -1.39
CMSS1-208ENST00000496116 TYMSOSQ8TAI1 123 aa6.36□□□□□ -1.39
CMSS1-208ENST00000496116 SEC61GP60059 68 aa6.35□□□□□ -1.39
CMSS1-208ENST00000496116 Q5W150 140 aa6.35□□□□□ -1.39
CMSS1-208ENST00000496116 KRTAP13-3Q3SY46 172 aa6.35□□□□□ -1.39
CMSS1-208ENST00000496116 FAM229AH3BQW9 127 aa6.34□□□□□ -1.39
CMSS1-208ENST00000496116 Q8N9P0 234 aaPredicted RBP6.34□□□□□ -1.39
CMSS1-208ENST00000496116 SPINK1P00995 79 aa6.34□□□□□ -1.4
CMSS1-208ENST00000496116 VPS13BQ7Z7G8 4022 aa6.33□□□□□ -1.4
CMSS1-208ENST00000496116 PSPHP1O15172 72 aa6.32□□□□□ -1.4
CMSS1-208ENST00000496116 LCE2BO14633 110 aa6.29□□□□□ -1.4
CMSS1-208ENST00000496116 A0A0A0MQY5 61 aa6.29□□□□□ -1.4
CMSS1-208ENST00000496116 A8MUN3 132 aa6.28□□□□□ -1.4
CMSS1-208ENST00000496116 KRTAP16-1A8MUX0 517 aa6.28□□□□□ -1.4
CMSS1-208ENST00000496116 RPS29P62273 56 aaKnown RBP6.28□□□□□ -1.4
CMSS1-208ENST00000496116 HRES1P13985 223 aa6.27□□□□□ -1.41
CMSS1-208ENST00000496116 SPAG11AQ6PDA7 123 aa6.27□□□□□ -1.41
CMSS1-208ENST00000496116 LINC00304Q8N9R0 145 aa6.27□□□□□ -1.41
CMSS1-208ENST00000496116 PRR26Q8N8Z3 221 aa6.26□□□□□ -1.41
CMSS1-208ENST00000496116 Q5VV11 94 aa6.25□□□□□ -1.41
CMSS1-208ENST00000496116 RETNLBQ9BQ08 111 aa6.25□□□□□ -1.41
CMSS1-208ENST00000496116 A0A1B0GVY2 172 aa6.25□□□□□ -1.41
CMSS1-208ENST00000496116 SMR3BP02814 79 aaPredicted RBP6.25□□□□□ -1.41
CMSS1-208ENST00000496116 IGKV2-30P06310 120 aa6.25□□□□□ -1.41
CMSS1-208ENST00000496116 ACYP2P14621 99 aa6.25□□□□□ -1.41
CMSS1-208ENST00000496116 SACSQ9NZJ4 4579 aa6.24□□□□□ -1.41
CMSS1-208ENST00000496116 PRR15LQ9BU68 103 aa6.24□□□□□ -1.41
CMSS1-208ENST00000496116 PKHD1P08F94 4074 aa6.24□□□□□ -1.41
CMSS1-208ENST00000496116 DMAC1Q96GE9 116 aa6.21□□□□□ -1.42
CMSS1-208ENST00000496116 CHKB-CPT1BH3BT56 60 aa6.2□□□□□ -1.42
CMSS1-208ENST00000496116 LINC01558Q9Y6Z2 57 aa6.2□□□□□ -1.42
CMSS1-208ENST00000496116 Q75L30 129 aa6.19□□□□□ -1.42
CMSS1-208ENST00000496116 IGKV2D-30A0A075B6S6 120 aa6.17□□□□□ -1.42
CMSS1-208ENST00000496116 DYNC1H1Q14204 4646 aaKnown RBP6.16□□□□□ -1.42
CMSS1-208ENST00000496116 KRTAP10-4P60372 401 aaPredicted RBP6.16□□□□□ -1.42
CMSS1-208ENST00000496116 A6NED7 52 aa6.13□□□□□ -1.43
CMSS1-208ENST00000496116 C7orf65Q6ZTY9 151 aa6.12□□□□□ -1.43
CMSS1-208ENST00000496116 APOBP04114 4563 aaKnown RBP6.1□□□□□ -1.43
CMSS1-208ENST00000496116 A8MU10 97 aa6.08□□□□□ -1.44
CMSS1-208ENST00000496116 C9orf92A6NGG3 77 aa6.07□□□□□ -1.44
CMSS1-208ENST00000496116 LCA10Q71F78 164 aa6.07□□□□□ -1.44
CMSS1-208ENST00000496116 C20orf166-AS1Q96NR2 134 aa6.07□□□□□ -1.44
CMSS1-208ENST00000496116 FAT1Q14517 4588 aa6.07□□□□□ -1.44
CMSS1-208ENST00000496116 A8MUU9 505 aa6.07□□□□□ -1.44
CMSS1-208ENST00000496116 CDC42SE1Q9NRR8 79 aa6.07□□□□□ -1.44
CMSS1-208ENST00000496116 RYR2Q92736 4967 aa6.06□□□□□ -1.44
CMSS1-208ENST00000496116 PKHD1L1Q86WI1 4243 aa6.05□□□□□ -1.44
CMSS1-208ENST00000496116 ATP11AUNQ6ZP68 121 aa6.04□□□□□ -1.44
CMSS1-208ENST00000496116 LCE2AQ5TA79 106 aaPredicted RBP6.03□□□□□ -1.44
CMSS1-208ENST00000496116 A0A1B0GU69 56 aa6.02□□□□□ -1.45
CMSS1-208ENST00000496116 SPINK7P58062 85 aa6.02□□□□□ -1.45
CMSS1-208ENST00000496116 PMAIP1Q13794 54 aa6.02□□□□□ -1.45
CMSS1-208ENST00000496116 SPTSSBQ8NFR3 76 aa6.01□□□□□ -1.45
CMSS1-208ENST00000496116 KMT2CQ8NEZ4 4911 aaKnown RBP6□□□□□ -1.45
CMSS1-208ENST00000496116 Q8N1X5 172 aa5.99□□□□□ -1.45
CMSS1-208ENST00000496116 Q5VSD8 79 aa5.98□□□□□ -1.45
CMSS1-208ENST00000496116 FLG2Q5D862 2391 aaPredicted RBP5.96□□□□□ -1.46
CMSS1-208ENST00000496116 KRTAP10-8P60410 259 aa5.95□□□□□ -1.46
CMSS1-208ENST00000496116 A6NN06 94 aa5.91□□□□□ -1.46
CMSS1-208ENST00000496116 UQCR11O14957 56 aa5.91□□□□□ -1.46
CMSS1-208ENST00000496116 KTN1-AS1Q86SY8 53 aa5.88□□□□□ -1.47
CMSS1-208ENST00000496116 RYR3Q15413 4870 aa5.88□□□□□ -1.47
CMSS1-208ENST00000496116 SPATA8Q6RVD6 105 aa5.87□□□□□ -1.47
CMSS1-208ENST00000496116 TNXBP22105 4242 aa5.87□□□□□ -1.47
CMSS1-208ENST00000496116 MIR22HGQ0VDD5 57 aa5.87□□□□□ -1.47
CMSS1-208ENST00000496116 KRTAP3-1Q9BYR8 98 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms