RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 SPINK6Q6UWN8 80 aa12.29□□□□□ -0.44
CCDC88B-208ENST00000492980 LINC00208Q96KT6 92 aa12.28□□□□□ -0.44
CCDC88B-208ENST00000492980 NOTCH2NLQ7Z3S9 236 aa12.26□□□□□ -0.45
CCDC88B-208ENST00000492980 H3BPC8 53 aa12.26□□□□□ -0.45
CCDC88B-208ENST00000492980 TRAV22A0A0B4J277 110 aa12.24□□□□□ -0.45
CCDC88B-208ENST00000492980 A0A1B0GVY2 172 aa12.23□□□□□ -0.45
CCDC88B-208ENST00000492980 TP53AIP1Q9HCN2 124 aa12.23□□□□□ -0.45
CCDC88B-208ENST00000492980 MRPL34Q9BQ48 92 aaKnown RBP12.22□□□□□ -0.45
CCDC88B-208ENST00000492980 DYNC1H1Q14204 4646 aaKnown RBP12.21□□□□□ -0.45
CCDC88B-208ENST00000492980 Q5XG85 94 aa12.2□□□□□ -0.46
CCDC88B-208ENST00000492980 C1orf64Q8NEQ6 169 aa12.19□□□□□ -0.46
CCDC88B-208ENST00000492980 NDUFS5O43920 106 aa12.17□□□□□ -0.46
CCDC88B-208ENST00000492980 PLA2G1BP04054 148 aaKnown RBP12.17□□□□□ -0.46
CCDC88B-208ENST00000492980 C1orf195Q5TG92 126 aa12.15□□□□□ -0.46
CCDC88B-208ENST00000492980 RYR2Q92736 4967 aa12.15□□□□□ -0.46
CCDC88B-208ENST00000492980 C8orf87E5RJ46 101 aa12.11□□□□□ -0.47
CCDC88B-208ENST00000492980 SMR3BP02814 79 aaPredicted RBP12.11□□□□□ -0.47
CCDC88B-208ENST00000492980 TYMSOSQ8TAI1 123 aa12.11□□□□□ -0.47
CCDC88B-208ENST00000492980 CYP4F30PQ9H0H9 118 aa12.11□□□□□ -0.47
CCDC88B-208ENST00000492980 SMIM26A0A096LP01 95 aa12.1□□□□□ -0.47
CCDC88B-208ENST00000492980 LIMD2Q9BT23 127 aa12.1□□□□□ -0.47
CCDC88B-208ENST00000492980 PRR4Q16378 134 aa12.09□□□□□ -0.47
CCDC88B-208ENST00000492980 APOBP04114 4563 aaKnown RBP12.08□□□□□ -0.48
CCDC88B-208ENST00000492980 SPANXA2-OT1Q8N9U9 137 aa12.07□□□□□ -0.48
CCDC88B-208ENST00000492980 FP248Q71RG6 208 aaPredicted RBP12.06□□□□□ -0.48
CCDC88B-208ENST00000492980 C4orf48Q5BLP8 95 aa12.05□□□□□ -0.48
CCDC88B-208ENST00000492980 LINC00313P59037 77 aa12.04□□□□□ -0.48
CCDC88B-208ENST00000492980 C4orf26Q17RF5 130 aa12.02□□□□□ -0.48
CCDC88B-208ENST00000492980 PRR26Q8N8Z3 221 aa12.02□□□□□ -0.48
CCDC88B-208ENST00000492980 SPINK1P00995 79 aa12.02□□□□□ -0.49
CCDC88B-208ENST00000492980 KRTAP10-4P60372 401 aaPredicted RBP12.02□□□□□ -0.49
CCDC88B-208ENST00000492980 KMT2CQ8NEZ4 4911 aaKnown RBP12□□□□□ -0.49
CCDC88B-208ENST00000492980 KRTAP13-3Q3SY46 172 aa11.99□□□□□ -0.49
CCDC88B-208ENST00000492980 Q5W150 140 aa11.99□□□□□ -0.49
CCDC88B-208ENST00000492980 PCOTHQ58A44 107 aa11.98□□□□□ -0.49
CCDC88B-208ENST00000492980 FAT1Q14517 4588 aa11.97□□□□□ -0.49
CCDC88B-208ENST00000492980 LINC00304Q8N9R0 145 aa11.96□□□□□ -0.5
CCDC88B-208ENST00000492980 Q8N9P0 234 aaPredicted RBP11.95□□□□□ -0.5
CCDC88B-208ENST00000492980 IGLV7-46A0A075B6I9 117 aa11.94□□□□□ -0.5
CCDC88B-208ENST00000492980 KRTAP16-1A8MUX0 517 aa11.94□□□□□ -0.5
CCDC88B-208ENST00000492980 LOC101927531A0A1B0GV80 90 aa11.92□□□□□ -0.5
CCDC88B-208ENST00000492980 RPS29P62273 56 aaKnown RBP11.92□□□□□ -0.5
CCDC88B-208ENST00000492980 SPAG11AQ6PDA7 123 aa11.9□□□□□ -0.5
CCDC88B-208ENST00000492980 MPLKIPQ8TAP9 179 aa11.87□□□□□ -0.51
CCDC88B-208ENST00000492980 PKHD1L1Q86WI1 4243 aa11.87□□□□□ -0.51
CCDC88B-208ENST00000492980 FAM229AH3BQW9 127 aa11.86□□□□□ -0.51
CCDC88B-208ENST00000492980 RETNLBQ9BQ08 111 aa11.8□□□□□ -0.52
CCDC88B-208ENST00000492980 COA5Q86WW8 74 aa11.77□□□□□ -0.53
CCDC88B-208ENST00000492980 Q1T7F1 81 aa11.76□□□□□ -0.53
CCDC88B-208ENST00000492980 IGKV2-30P06310 120 aa11.73□□□□□ -0.53
CCDC88B-208ENST00000492980 RYR3Q15413 4870 aa11.69□□□□□ -0.54
CCDC88B-208ENST00000492980 HRES1P13985 223 aa11.67□□□□□ -0.54
CCDC88B-208ENST00000492980 HSPG2P98160 4391 aa11.66□□□□□ -0.54
CCDC88B-208ENST00000492980 Q5VSD8 79 aa11.62□□□□□ -0.55
CCDC88B-208ENST00000492980 V9GYY9 64 aa11.62□□□□□ -0.55
CCDC88B-208ENST00000492980 IGKV2D-30A0A075B6S6 120 aa11.59□□□□□ -0.55
CCDC88B-208ENST00000492980 C9orf92A6NGG3 77 aa11.58□□□□□ -0.56
CCDC88B-208ENST00000492980 PSPHP1O15172 72 aa11.57□□□□□ -0.56
CCDC88B-208ENST00000492980 DMAC1Q96GE9 116 aa11.57□□□□□ -0.56
CCDC88B-208ENST00000492980 RYR1P21817 5038 aa11.55□□□□□ -0.56
CCDC88B-208ENST00000492980 Q8N1X5 172 aa11.54□□□□□ -0.56
CCDC88B-208ENST00000492980 TNXBP22105 4242 aa11.54□□□□□ -0.56
CCDC88B-208ENST00000492980 ACYP2P14621 99 aa11.54□□□□□ -0.56
CCDC88B-208ENST00000492980 KRTAP10-8P60410 259 aa11.53□□□□□ -0.56
CCDC88B-208ENST00000492980 C20orf166-AS1Q96NR2 134 aa11.53□□□□□ -0.56
CCDC88B-208ENST00000492980 A8MUN3 132 aa11.53□□□□□ -0.56
CCDC88B-208ENST00000492980 A8MUU9 505 aa11.53□□□□□ -0.56
CCDC88B-208ENST00000492980 FLG2Q5D862 2391 aaPredicted RBP11.52□□□□□ -0.56
CCDC88B-208ENST00000492980 LRP1Q07954 4544 aaKnown RBP11.51□□□□□ -0.57
CCDC88B-208ENST00000492980 KRTAP17-1Q9BYP8 105 aa11.5□□□□□ -0.57
CCDC88B-208ENST00000492980 C7orf65Q6ZTY9 151 aa11.47□□□□□ -0.57
CCDC88B-208ENST00000492980 Q5VV11 94 aa11.46□□□□□ -0.57
CCDC88B-208ENST00000492980 FAT3Q8TDW7 4589 aa11.46□□□□□ -0.58
CCDC88B-208ENST00000492980 BRK1Q8WUW1 75 aa11.45□□□□□ -0.58
CCDC88B-208ENST00000492980 PRR15LQ9BU68 103 aa11.45□□□□□ -0.58
CCDC88B-208ENST00000492980 PRO0628Q9UI54 55 aa11.42□□□□□ -0.58
CCDC88B-208ENST00000492980 LINC01558Q9Y6Z2 57 aa11.42□□□□□ -0.58
CCDC88B-208ENST00000492980 CHKB-CPT1BH3BT56 60 aa11.39□□□□□ -0.59
CCDC88B-208ENST00000492980 KIAA1109Q2LD37 5005 aa11.37□□□□□ -0.59
CCDC88B-208ENST00000492980 Q75L30 129 aa11.34□□□□□ -0.59
CCDC88B-208ENST00000492980 EPPK1P58107 5090 aaKnown RBP11.28□□□□□ -0.6
CCDC88B-208ENST00000492980 MT1HL1P0DM35 61 aa11.27□□□□□ -0.61
CCDC88B-208ENST00000492980 SPINK7P58062 85 aa11.24□□□□□ -0.61
CCDC88B-208ENST00000492980 DMBT1Q9UGM3 2413 aaPredicted RBP11.2□□□□□ -0.62
CCDC88B-208ENST00000492980 MYCBP2O75592 4640 aa11.19□□□□□ -0.62
CCDC88B-208ENST00000492980 A6NED7 52 aa11.18□□□□□ -0.62
CCDC88B-208ENST00000492980 A8MU10 97 aa11.16□□□□□ -0.62
CCDC88B-208ENST00000492980 RPL37P61927 97 aaKnown RBP11.14□□□□□ -0.63
CCDC88B-208ENST00000492980 XP32Q5T750 250 aa11.14□□□□□ -0.63
CCDC88B-208ENST00000492980 ATP11AUNQ6ZP68 121 aa11.14□□□□□ -0.63
CCDC88B-208ENST00000492980 KRTAP3-1Q9BYR8 98 aa11.14□□□□□ -0.63
CCDC88B-208ENST00000492980 LCA10Q71F78 164 aa11.11□□□□□ -0.63
CCDC88B-208ENST00000492980 A0A1B0GU69 56 aa11.09□□□□□ -0.63
CCDC88B-208ENST00000492980 CDC42SE1Q9NRR8 79 aa11.05□□□□□ -0.64
CCDC88B-208ENST00000492980 COX6B2Q6YFQ2 88 aa11.03□□□□□ -0.64
CCDC88B-208ENST00000492980 KRTAP4-5Q9BYR2 181 aa11.01□□□□□ -0.65
CCDC88B-208ENST00000492980 SPTSSBQ8NFR3 76 aa10.99□□□□□ -0.65
CCDC88B-208ENST00000492980 TPRXLQ17RH7 258 aa10.9□□□□□ -0.66
CCDC88B-208ENST00000492980 SEC61GP60059 68 aa10.84□□□□□ -0.67
CCDC88B-208ENST00000492980 UQCR11O14957 56 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms