RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 CSMD1Q96PZ7 3565 aa4.01□□□□□ -1.77
SYNE1-228ENST00000490135 EPG5Q9HCE0 2579 aa4.01□□□□□ -1.77
SYNE1-228ENST00000490135 FASNP49327 2511 aaKnown RBP4□□□□□ -1.77
SYNE1-228ENST00000490135 ADGRG4Q8IZF6 3080 aa3.99□□□□□ -1.77
SYNE1-228ENST00000490135 KALRNO60229 2985 aa3.99□□□□□ -1.77
SYNE1-228ENST00000490135 USP24Q9UPU5 2620 aa3.99□□□□□ -1.77
SYNE1-228ENST00000490135 TPRXLQ17RH7 258 aa3.97□□□□□ -1.77
SYNE1-228ENST00000490135 DMBT1Q9UGM3 2413 aaPredicted RBP3.97□□□□□ -1.77
SYNE1-228ENST00000490135 KMT2BQ9UMN6 2715 aaPredicted RBP3.96□□□□□ -1.78
SYNE1-228ENST00000490135 PRO2289Q9P1D8 64 aa3.96□□□□□ -1.78
SYNE1-228ENST00000490135 NBPF19A0A087WUL8 3843 aa3.96□□□□□ -1.78
SYNE1-228ENST00000490135 CSMD2Q7Z408 3487 aa3.93□□□□□ -1.78
SYNE1-228ENST00000490135 Q6ZRN7 208 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-228ENST00000490135 VPS13CQ709C8 3753 aa3.92□□□□□ -1.78
SYNE1-228ENST00000490135 LRBAP50851 2863 aa3.91□□□□□ -1.78
SYNE1-228ENST00000490135 A0A1B0GVY2 172 aa3.91□□□□□ -1.78
SYNE1-228ENST00000490135 TACC2O95359 2948 aa3.89□□□□□ -1.79
SYNE1-228ENST00000490135 CHD6Q8TD26 2715 aa3.89□□□□□ -1.79
SYNE1-228ENST00000490135 KRTAP13-3Q3SY46 172 aa3.88□□□□□ -1.79
SYNE1-228ENST00000490135 KRTAP13-2Q52LG2 175 aa3.88□□□□□ -1.79
SYNE1-228ENST00000490135 STAB1Q9NY15 2570 aa3.88□□□□□ -1.79
SYNE1-228ENST00000490135 KRTAP10-10P60014 251 aa3.88□□□□□ -1.79
SYNE1-228ENST00000490135 KRTAP13-1Q8IUC0 172 aa3.88□□□□□ -1.79
SYNE1-228ENST00000490135 TENM4Q6N022 2769 aa3.87□□□□□ -1.79
SYNE1-228ENST00000490135 CFAP46Q8IYW2 2715 aa3.87□□□□□ -1.79
SYNE1-228ENST00000490135 CRYBG3Q68DQ2 2970 aa3.87□□□□□ -1.79
SYNE1-228ENST00000490135 SVEP1Q4LDE5 3571 aa3.86□□□□□ -1.79
SYNE1-228ENST00000490135 UTP20O75691 2785 aaKnown RBP3.85□□□□□ -1.79
SYNE1-228ENST00000490135 ATRQ13535 2644 aa3.83□□□□□ -1.8
SYNE1-228ENST00000490135 STAB2Q8WWQ8 2551 aa3.83□□□□□ -1.8
SYNE1-228ENST00000490135 CELSR1Q9NYQ6 3014 aa3.83□□□□□ -1.8
SYNE1-228ENST00000490135 ASH1LQ9NR48 2969 aaKnown RBP3.83□□□□□ -1.8
SYNE1-228ENST00000490135 MAP1AP78559 2803 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-228ENST00000490135 DCHS2Q6V1P9 2916 aa3.82□□□□□ -1.8
SYNE1-228ENST00000490135 ZNF469Q96JG9 3925 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-228ENST00000490135 HECTD1Q9ULT8 2610 aa3.82□□□□□ -1.8
SYNE1-228ENST00000490135 IGSF10Q6WRI0 2623 aa3.81□□□□□ -1.8
SYNE1-228ENST00000490135 MAST4O15021 2626 aa3.8□□□□□ -1.8
SYNE1-228ENST00000490135 HRNRQ86YZ3 2850 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-228ENST00000490135 FLNBO75369 2602 aaKnown RBP3.79□□□□□ -1.8
SYNE1-228ENST00000490135 GCN1Q92616 2671 aaKnown RBP3.79□□□□□ -1.8
SYNE1-228ENST00000490135 CELSR2Q9HCU4 2923 aa3.78□□□□□ -1.8
SYNE1-228ENST00000490135 XP32Q5T750 250 aa3.77□□□□□ -1.81
SYNE1-228ENST00000490135 SETXQ7Z333 2677 aaKnown RBP3.77□□□□□ -1.81
SYNE1-228ENST00000490135 NBEAL1Q6ZS30 2694 aa3.76□□□□□ -1.81
SYNE1-228ENST00000490135 CENPEQ02224 2701 aa3.76□□□□□ -1.81
SYNE1-228ENST00000490135 FLNCQ14315 2725 aa3.76□□□□□ -1.81
SYNE1-228ENST00000490135 AKAP9Q99996 3911 aa3.76□□□□□ -1.81
SYNE1-228ENST00000490135 KRTAP12-2P59991 146 aa3.75□□□□□ -1.81
SYNE1-228ENST00000490135 CUBNO60494 3623 aa3.74□□□□□ -1.81
SYNE1-228ENST00000490135 ALMS1Q8TCU4 4167 aa3.72□□□□□ -1.81
SYNE1-228ENST00000490135 UBR5O95071 2799 aaPredicted RBP3.7□□□□□ -1.82
SYNE1-228ENST00000490135 FBN2P35556 2912 aa3.69□□□□□ -1.82
SYNE1-228ENST00000490135 ITPR3Q14573 2671 aa3.69□□□□□ -1.82
SYNE1-228ENST00000490135 FLNAP21333 2647 aaKnown RBP3.69□□□□□ -1.82
SYNE1-228ENST00000490135 HELZ2Q9BYK8 2649 aaKnown RBP3.69□□□□□ -1.82
SYNE1-228ENST00000490135 BAHCC1Q9P281 2608 aa3.69□□□□□ -1.82
SYNE1-228ENST00000490135 INE1O15225 51 aa3.68□□□□□ -1.82
SYNE1-228ENST00000490135 ZANQ9Y493 2812 aa3.66□□□□□ -1.82
SYNE1-228ENST00000490135 TEX15Q9BXT5 2789 aa3.64□□□□□ -1.83
SYNE1-228ENST00000490135 KRTAP12-1P59990 96 aa3.63□□□□□ -1.83
SYNE1-228ENST00000490135 OTOGQ6ZRI0 2925 aa3.62□□□□□ -1.83
SYNE1-228ENST00000490135 ITPR2Q14571 2701 aa3.62□□□□□ -1.83
SYNE1-228ENST00000490135 KRTAP13-4Q3LI77 160 aa3.62□□□□□ -1.83
SYNE1-228ENST00000490135 PDZD2O15018 2839 aa3.61□□□□□ -1.83
SYNE1-228ENST00000490135 KRTAP1-4P0C5Y4 121 aa3.6□□□□□ -1.83
SYNE1-228ENST00000490135 MXRA5Q9NR99 2828 aa3.59□□□□□ -1.83
SYNE1-228ENST00000490135 APCP25054 2843 aa3.58□□□□□ -1.84
SYNE1-228ENST00000490135 KRTAP3-1Q9BYR8 98 aa3.56□□□□□ -1.84
SYNE1-228ENST00000490135 NF1P21359 2839 aa3.56□□□□□ -1.84
SYNE1-228ENST00000490135 KRTAP10-6P60371 365 aaPredicted RBP3.53□□□□□ -1.84
SYNE1-228ENST00000490135 DNHD1Q96M86 4753 aa3.53□□□□□ -1.84
SYNE1-228ENST00000490135 UNC79Q9P2D8 2635 aa3.52□□□□□ -1.85
SYNE1-228ENST00000490135 TEP1Q99973 2627 aaKnown RBP3.52□□□□□ -1.85
SYNE1-228ENST00000490135 NOTCH1P46531 2555 aa3.5□□□□□ -1.85
SYNE1-228ENST00000490135 NIPBLQ6KC79 2804 aaeCLIP3.49□□□□□ -1.85
SYNE1-228ENST00000490135 NBEAL2Q6ZNJ1 2754 aa3.47□□□□□ -1.85
SYNE1-228ENST00000490135 CRCT1Q9UGL9 99 aa3.46□□□□□ -1.86
SYNE1-228ENST00000490135 KRTAP23-1A1A580 65 aa3.45□□□□□ -1.86
SYNE1-228ENST00000490135 ANK3Q12955 4377 aaKnown RBP3.45□□□□□ -1.86
SYNE1-228ENST00000490135 COL6A5A8TX70 2615 aa3.44□□□□□ -1.86
SYNE1-228ENST00000490135 HIVEP1P15822 2718 aa3.43□□□□□ -1.86
SYNE1-228ENST00000490135 FBN1P35555 2871 aaKnown RBP3.42□□□□□ -1.86
SYNE1-228ENST00000490135 KRTAP3-2Q9BYR7 98 aa3.41□□□□□ -1.86
SYNE1-228ENST00000490135 ANK2Q01484 3957 aa3.39□□□□□ -1.87
SYNE1-228ENST00000490135 CMYA5Q8N3K9 4069 aa3.39□□□□□ -1.87
SYNE1-228ENST00000490135 NSD1Q96L73 2696 aaPredicted RBP3.39□□□□□ -1.87
SYNE1-228ENST00000490135 VWFP04275 2813 aa3.38□□□□□ -1.87
SYNE1-228ENST00000490135 TRRAPQ9Y4A5 3859 aa3.38□□□□□ -1.87
SYNE1-228ENST00000490135 TENM1Q9UKZ4 2725 aa3.37□□□□□ -1.87
SYNE1-228ENST00000490135 CSMD3Q7Z407 3707 aa3.35□□□□□ -1.87
SYNE1-228ENST00000490135 PKD1L1Q8TDX9 2849 aa3.34□□□□□ -1.87
SYNE1-228ENST00000490135 KRTAP3-3Q9BYR6 98 aa3.33□□□□□ -1.88
SYNE1-228ENST00000490135 KRTAP10-12P60413 245 aa3.31□□□□□ -1.88
SYNE1-228ENST00000490135 PRKDCP78527 4128 aaKnown RBP3.26□□□□□ -1.89
SYNE1-228ENST00000490135 COL7A1Q02388 2944 aa3.24□□□□□ -1.89
SYNE1-228ENST00000490135 TENM3Q9P273 2699 aa3.24□□□□□ -1.89
SYNE1-228ENST00000490135 TENM2Q9NT68 2774 aa3.23□□□□□ -1.89
SYNE1-228ENST00000490135 MEGF8Q7Z7M0 2845 aa3.23□□□□□ -1.89
SYNE1-228ENST00000490135 TGP01266 2768 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 97.9 ms