RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 KRTAP9-8Q9BYQ0 159 aa11.56□□□□□ -0.56
COL9A3-213ENST00000489045 C21orf62-AS1Q17RA5 79 aa11.55□□□□□ -0.56
COL9A3-213ENST00000489045 NAA38Q9BRA0 125 aaKnown RBP11.55□□□□□ -0.56
COL9A3-213ENST00000489045 M0R143 59 aa11.54□□□□□ -0.56
COL9A3-213ENST00000489045 MPLKIPQ8TAP9 179 aa11.54□□□□□ -0.56
COL9A3-213ENST00000489045 J3KT08 172 aa11.53□□□□□ -0.56
COL9A3-213ENST00000489045 ATXN8Q156A1 80 aa11.53□□□□□ -0.56
COL9A3-213ENST00000489045 Q6ZQT0 140 aa11.53□□□□□ -0.56
COL9A3-213ENST00000489045 RBM12B-AS1Q9P1G2 102 aa11.53□□□□□ -0.56
COL9A3-213ENST00000489045 JMJD7-PLA2G4BH0Y9G9 81 aa11.47□□□□□ -0.57
COL9A3-213ENST00000489045 ZCCHC13Q8WW36 166 aaKnown RBP11.46□□□□□ -0.57
COL9A3-213ENST00000489045 LOC110117498A0A087WWA1 95 aa11.44□□□□□ -0.58
COL9A3-213ENST00000489045 NDUFB1O75438 58 aa11.44□□□□□ -0.58
COL9A3-213ENST00000489045 A0A1B0GW54 56 aa11.41□□□□□ -0.58
COL9A3-213ENST00000489045 MT2AP02795 61 aa11.4□□□□□ -0.58
COL9A3-213ENST00000489045 C14orf132Q9NPU4 83 aa11.4□□□□□ -0.58
COL9A3-213ENST00000489045 A8MWP4 228 aa11.39□□□□□ -0.59
COL9A3-213ENST00000489045 SMIM6P0DI80 62 aa11.39□□□□□ -0.59
COL9A3-213ENST00000489045 PDE6GP18545 87 aa11.39□□□□□ -0.59
COL9A3-213ENST00000489045 Q8N9P0 234 aaPredicted RBP11.39□□□□□ -0.59
COL9A3-213ENST00000489045 C8orf17Q9NRJ1 99 aa11.38□□□□□ -0.59
COL9A3-213ENST00000489045 SPINK7P58062 85 aa11.37□□□□□ -0.59
COL9A3-213ENST00000489045 IGKV3D-7A0A0C4DH55 119 aa11.36□□□□□ -0.59
COL9A3-213ENST00000489045 LYRM7Q5U5X0 104 aa11.36□□□□□ -0.59
COL9A3-213ENST00000489045 MTURNQ8N3F0 131 aa11.34□□□□□ -0.59
COL9A3-213ENST00000489045 USH2AO75445 5202 aa11.34□□□□□ -0.59
COL9A3-213ENST00000489045 MT1FP04733 61 aa11.31□□□□□ -0.6
COL9A3-213ENST00000489045 BATFQ16520 125 aa11.31□□□□□ -0.6
COL9A3-213ENST00000489045 Q6ZVQ6 151 aa11.29□□□□□ -0.6
COL9A3-213ENST00000489045 TSTD3H0UI37 97 aa11.28□□□□□ -0.6
COL9A3-213ENST00000489045 NREPQ16612 68 aa11.28□□□□□ -0.6
COL9A3-213ENST00000489045 PRR15Q8IV56 129 aa11.27□□□□□ -0.61
COL9A3-213ENST00000489045 SSPOA2VEC9 5147 aa11.26□□□□□ -0.61
COL9A3-213ENST00000489045 KRTAP10-10P60014 251 aa11.25□□□□□ -0.61
COL9A3-213ENST00000489045 WFDC13Q8IUB5 93 aa11.23□□□□□ -0.61
COL9A3-213ENST00000489045 MMP24-AS1A0A0U1RRL7 71 aa11.22□□□□□ -0.61
COL9A3-213ENST00000489045 KRTAP9-3Q9BYQ3 159 aa11.2□□□□□ -0.62
COL9A3-213ENST00000489045 H3BT86 120 aa11.19□□□□□ -0.62
COL9A3-213ENST00000489045 TMEM254Q8TBM7 123 aa11.19□□□□□ -0.62
COL9A3-213ENST00000489045 MRPL34Q9BQ48 92 aaKnown RBP11.19□□□□□ -0.62
COL9A3-213ENST00000489045 C9orf118A6NHY6 69 aa11.18□□□□□ -0.62
COL9A3-213ENST00000489045 LCE2BO14633 110 aa11.18□□□□□ -0.62
COL9A3-213ENST00000489045 K7EQZ3 153 aa11.16□□□□□ -0.62
COL9A3-213ENST00000489045 A0A1W2PPM0 123 aa11.15□□□□□ -0.62
COL9A3-213ENST00000489045 TAX1BP3O14907 124 aa11.15□□□□□ -0.62
COL9A3-213ENST00000489045 hDV103S1A0JD37 113 aa11.13□□□□□ -0.63
COL9A3-213ENST00000489045 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.1□□□□□ -0.63
COL9A3-213ENST00000489045 NDUFS5O43920 106 aa11.1□□□□□ -0.63
COL9A3-213ENST00000489045 BPY2O14599 106 aa11.07□□□□□ -0.64
COL9A3-213ENST00000489045 LOC105371267A0A1B0GV96 52 aa11.06□□□□□ -0.64
COL9A3-213ENST00000489045 KRTAP19-1Q8IUB9 90 aa11.04□□□□□ -0.64
COL9A3-213ENST00000489045 FCGBPQ9Y6R7 5405 aaPredicted RBP11.01□□□□□ -0.65
COL9A3-213ENST00000489045 KRTAP9-7A8MTY7 169 aa10.99□□□□□ -0.65
COL9A3-213ENST00000489045 SPCS1Q9Y6A9 102 aa10.99□□□□□ -0.65
COL9A3-213ENST00000489045 IGKV2D-30A0A075B6S6 120 aa10.98□□□□□ -0.65
COL9A3-213ENST00000489045 IGKV2-30P06310 120 aa10.98□□□□□ -0.65
COL9A3-213ENST00000489045 H1FX-AS1Q4G0G2 97 aa10.98□□□□□ -0.65
COL9A3-213ENST00000489045 Q8N9L7 120 aa10.98□□□□□ -0.65
COL9A3-213ENST00000489045 Q5W150 140 aa10.97□□□□□ -0.65
COL9A3-213ENST00000489045 SMCPP49901 116 aaPredicted RBP10.94□□□□□ -0.66
COL9A3-213ENST00000489045 CASC2Q6XLA1 102 aa10.94□□□□□ -0.66
COL9A3-213ENST00000489045 C7orf65Q6ZTY9 151 aa10.94□□□□□ -0.66
COL9A3-213ENST00000489045 HCG22E2RYF7 251 aa10.91□□□□□ -0.66
COL9A3-213ENST00000489045 LINC00846Q9NV44 126 aa10.83□□□□□ -0.68
COL9A3-213ENST00000489045 PRO0461Q9UI25 63 aa10.83□□□□□ -0.68
COL9A3-213ENST00000489045 CXCL6P80162 114 aa10.82□□□□□ -0.68
COL9A3-213ENST00000489045 COL5A1-AS1Q5SY13 56 aa10.81□□□□□ -0.68
COL9A3-213ENST00000489045 UBL5Q9BZL1 73 aa10.81□□□□□ -0.68
COL9A3-213ENST00000489045 KRTAP19-6Q3LI70 58 aa10.8□□□□□ -0.68
COL9A3-213ENST00000489045 C4orf26Q17RF5 130 aa10.79□□□□□ -0.68
COL9A3-213ENST00000489045 K7EP34 96 aa10.78□□□□□ -0.68
COL9A3-213ENST00000489045 MACF1Q9UPN3 7388 aaKnown RBP10.67□□□□□ -0.7
COL9A3-213ENST00000489045 KRTAP3-1Q9BYR8 98 aa10.63□□□□□ -0.71
COL9A3-213ENST00000489045 SYNE2Q8WXH0 6885 aaKnown RBP10.63□□□□□ -0.71
COL9A3-213ENST00000489045 C5orf47Q569G3 176 aa10.62□□□□□ -0.71
COL9A3-213ENST00000489045 GTF2H5Q6ZYL4 71 aa10.6□□□□□ -0.71
COL9A3-213ENST00000489045 S4R3F8 94 aa10.58□□□□□ -0.72
COL9A3-213ENST00000489045 C1orf64Q8NEQ6 169 aa10.57□□□□□ -0.72
COL9A3-213ENST00000489045 TP53AIP1Q9HCN2 124 aa10.57□□□□□ -0.72
COL9A3-213ENST00000489045 F8W1H4 67 aa10.55□□□□□ -0.72
COL9A3-213ENST00000489045 ETDBQ3ZM63 59 aa10.54□□□□□ -0.72
COL9A3-213ENST00000489045 FAM236AA0A1B0GUQ0 79 aa10.53□□□□□ -0.72
COL9A3-213ENST00000489045 FAM236BA0A1B0GV22 79 aa10.53□□□□□ -0.72
COL9A3-213ENST00000489045 LCA10Q71F78 164 aa10.51□□□□□ -0.73
COL9A3-213ENST00000489045 CSAG1Q6PB30 78 aa10.49□□□□□ -0.73
COL9A3-213ENST00000489045 PCP4L1A6NKN8 68 aa10.46□□□□□ -0.73
COL9A3-213ENST00000489045 CYP4F30PQ9H0H9 118 aa10.39□□□□□ -0.75
COL9A3-213ENST00000489045 TRAV22A0A0B4J277 110 aa10.35□□□□□ -0.75
COL9A3-213ENST00000489045 MT1BP07438 61 aa10.35□□□□□ -0.75
COL9A3-213ENST00000489045 SPRR2GQ9BYE4 73 aa10.35□□□□□ -0.75
COL9A3-213ENST00000489045 KRTAP3-3Q9BYR6 98 aa10.34□□□□□ -0.75
COL9A3-213ENST00000489045 KRTAP6-3Q3LI67 103 aa10.33□□□□□ -0.76
COL9A3-213ENST00000489045 Q5VV11 94 aa10.33□□□□□ -0.76
COL9A3-213ENST00000489045 LOC101927531A0A1B0GV80 90 aa10.31□□□□□ -0.76
COL9A3-213ENST00000489045 ACYP1P07311 99 aa10.31□□□□□ -0.76
COL9A3-213ENST00000489045 KRTAP19-8Q3LI54 63 aa10.31□□□□□ -0.76
COL9A3-213ENST00000489045 KLKP1Q107X0 134 aa10.3□□□□□ -0.76
COL9A3-213ENST00000489045 A0A087WVE0 104 aa10.28□□□□□ -0.76
COL9A3-213ENST00000489045 A6NN06 94 aa10.27□□□□□ -0.77
COL9A3-213ENST00000489045 ATP5EP2Q5VTU8 51 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms