RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 LINC00313P59037 77 aa8.55□□□□□ -1.04
C9orf3-219ENST00000488186 ETDBQ3ZM63 59 aa8.55□□□□□ -1.04
C9orf3-219ENST00000488186 IGHV6-1A0A0B4J1U7 121 aa8.54□□□□□ -1.04
C9orf3-219ENST00000488186 DSCR10P59022 87 aa8.54□□□□□ -1.04
C9orf3-219ENST00000488186 MUC2Q02817 5179 aa8.53□□□□□ -1.04
C9orf3-219ENST00000488186 A0A1B0GV90 55 aa8.52□□□□□ -1.05
C9orf3-219ENST00000488186 A0A1B0GVX0 72 aa8.51□□□□□ -1.05
C9orf3-219ENST00000488186 C8orf87E5RJ46 101 aa8.49□□□□□ -1.05
C9orf3-219ENST00000488186 RPL37P61927 97 aaKnown RBP8.49□□□□□ -1.05
C9orf3-219ENST00000488186 PCOTHQ58A44 107 aa8.48□□□□□ -1.05
C9orf3-219ENST00000488186 UBL5Q9BZL1 73 aa8.48□□□□□ -1.05
C9orf3-219ENST00000488186 A8MWP4 228 aa8.47□□□□□ -1.05
C9orf3-219ENST00000488186 BPY2O14599 106 aa8.47□□□□□ -1.05
C9orf3-219ENST00000488186 ATP11AUNQ6ZP68 121 aa8.47□□□□□ -1.05
C9orf3-219ENST00000488186 Q6ZVQ6 151 aa8.46□□□□□ -1.06
C9orf3-219ENST00000488186 Q75L30 129 aa8.46□□□□□ -1.06
C9orf3-219ENST00000488186 A0A0U1RQV1 116 aa8.44□□□□□ -1.06
C9orf3-219ENST00000488186 NOTCH2NLQ7Z3S9 236 aa8.44□□□□□ -1.06
C9orf3-219ENST00000488186 LINC00846Q9NV44 126 aa8.43□□□□□ -1.06
C9orf3-219ENST00000488186 IGKV3D-7A0A0C4DH55 119 aa8.42□□□□□ -1.06
C9orf3-219ENST00000488186 C20orf166-AS1Q96NR2 134 aa8.42□□□□□ -1.06
C9orf3-219ENST00000488186 A8MUU9 505 aa8.41□□□□□ -1.06
C9orf3-219ENST00000488186 PRR15Q8IV56 129 aa8.41□□□□□ -1.06
C9orf3-219ENST00000488186 C8orf17Q9NRJ1 99 aa8.4□□□□□ -1.06
C9orf3-219ENST00000488186 KRTAP16-1A8MUX0 517 aa8.38□□□□□ -1.07
C9orf3-219ENST00000488186 K7EQZ3 153 aa8.37□□□□□ -1.07
C9orf3-219ENST00000488186 ACYP1P07311 99 aa8.37□□□□□ -1.07
C9orf3-219ENST00000488186 KRTAP4-1Q9BYQ7 146 aa8.33□□□□□ -1.08
C9orf3-219ENST00000488186 hDV103S1A0JD37 113 aa8.31□□□□□ -1.08
C9orf3-219ENST00000488186 Q8N9L7 120 aa8.31□□□□□ -1.08
C9orf3-219ENST00000488186 MMP24-AS1A0A0U1RRL7 71 aa8.3□□□□□ -1.08
C9orf3-219ENST00000488186 FAM240AA0A1B0GVK7 77 aa8.3□□□□□ -1.08
C9orf3-219ENST00000488186 TMEM254Q8TBM7 123 aa8.29□□□□□ -1.08
C9orf3-219ENST00000488186 MRPL34Q9BQ48 92 aaKnown RBP8.29□□□□□ -1.08
C9orf3-219ENST00000488186 FAT4Q6V0I7 4981 aa8.29□□□□□ -1.08
C9orf3-219ENST00000488186 J3QR89 54 aa8.27□□□□□ -1.09
C9orf3-219ENST00000488186 NDUFS5O43920 106 aa8.27□□□□□ -1.09
C9orf3-219ENST00000488186 CXCL6P80162 114 aa8.27□□□□□ -1.09
C9orf3-219ENST00000488186 Q8N9P0 234 aaPredicted RBP8.27□□□□□ -1.09
C9orf3-219ENST00000488186 CASC2Q6XLA1 102 aa8.26□□□□□ -1.09
C9orf3-219ENST00000488186 WFDC13Q8IUB5 93 aa8.26□□□□□ -1.09
C9orf3-219ENST00000488186 ZCCHC13Q8WW36 166 aaKnown RBP8.24□□□□□ -1.09
C9orf3-219ENST00000488186 LCE2AQ5TA79 106 aaPredicted RBP8.22□□□□□ -1.09
C9orf3-219ENST00000488186 HCG22E2RYF7 251 aa8.21□□□□□ -1.1
C9orf3-219ENST00000488186 ATP5EP2Q5VTU8 51 aa8.2□□□□□ -1.1
C9orf3-219ENST00000488186 COX6B2Q6YFQ2 88 aa8.17□□□□□ -1.1
C9orf3-219ENST00000488186 LINC00643Q86TS7 51 aa8.17□□□□□ -1.1
C9orf3-219ENST00000488186 HIST1H4AP62805 103 aaKnown RBP8.16□□□□□ -1.1
C9orf3-219ENST00000488186 KRTAP19-2Q3LHN2 52 aa8.13□□□□□ -1.11
C9orf3-219ENST00000488186 SPINK7P58062 85 aa8.1□□□□□ -1.11
C9orf3-219ENST00000488186 LCE2CQ5TA81 110 aa8.1□□□□□ -1.11
C9orf3-219ENST00000488186 K7ERU9 68 aa8.08□□□□□ -1.12
C9orf3-219ENST00000488186 RBM12B-AS1Q9P1G2 102 aa8.08□□□□□ -1.12
C9orf3-219ENST00000488186 TP53AIP1Q9HCN2 124 aa8.07□□□□□ -1.12
C9orf3-219ENST00000488186 FAM236DA0A1B0GTK5 79 aa8.06□□□□□ -1.12
C9orf3-219ENST00000488186 LCE2BO14633 110 aa8.06□□□□□ -1.12
C9orf3-219ENST00000488186 FAM236CP0DP71 79 aa8.06□□□□□ -1.12
C9orf3-219ENST00000488186 Q5W150 140 aa8.04□□□□□ -1.12
C9orf3-219ENST00000488186 IGKV2D-30A0A075B6S6 120 aa8.03□□□□□ -1.12
C9orf3-219ENST00000488186 IGKV2-30P06310 120 aa8.03□□□□□ -1.12
C9orf3-219ENST00000488186 HRES1P13985 223 aa8.02□□□□□ -1.13
C9orf3-219ENST00000488186 A0A087WVE0 104 aa8.01□□□□□ -1.13
C9orf3-219ENST00000488186 C7orf65Q6ZTY9 151 aa7.99□□□□□ -1.13
C9orf3-219ENST00000488186 FLGP20930 4061 aaPredicted RBP7.97□□□□□ -1.13
C9orf3-219ENST00000488186 M0R2T5 61 aa7.97□□□□□ -1.13
C9orf3-219ENST00000488186 MT1HP80294 61 aa7.97□□□□□ -1.13
C9orf3-219ENST00000488186 MPLKIPQ8TAP9 179 aa7.95□□□□□ -1.14
C9orf3-219ENST00000488186 UQCRQO14949 82 aa7.92□□□□□ -1.14
C9orf3-219ENST00000488186 TRAV22A0A0B4J277 110 aa7.91□□□□□ -1.14
C9orf3-219ENST00000488186 SCGB1A1P11684 91 aa7.9□□□□□ -1.14
C9orf3-219ENST00000488186 IMUPQ9GZP8 106 aa7.88□□□□□ -1.15
C9orf3-219ENST00000488186 MT-ATP8P03928 68 aa7.87□□□□□ -1.15
C9orf3-219ENST00000488186 H0Y9P7 68 aa7.85□□□□□ -1.15
C9orf3-219ENST00000488186 ATOX1O00244 68 aa7.85□□□□□ -1.15
C9orf3-219ENST00000488186 LOC101927531A0A1B0GV80 90 aa7.83□□□□□ -1.16
C9orf3-219ENST00000488186 C4orf26Q17RF5 130 aa7.82□□□□□ -1.16
C9orf3-219ENST00000488186 MP68P56378 58 aa7.81□□□□□ -1.16
C9orf3-219ENST00000488186 CYP4F30PQ9H0H9 118 aa7.81□□□□□ -1.16
C9orf3-219ENST00000488186 LORP23490 312 aaPredicted RBP7.8□□□□□ -1.16
C9orf3-219ENST00000488186 OCR1Q9BZK8 76 aa7.8□□□□□ -1.16
C9orf3-219ENST00000488186 KRTAP10-6P60371 365 aaPredicted RBP7.79□□□□□ -1.16
C9orf3-219ENST00000488186 H1FX-AS1Q4G0G2 97 aa7.79□□□□□ -1.16
C9orf3-219ENST00000488186 C5orf47Q569G3 176 aa7.78□□□□□ -1.16
C9orf3-219ENST00000488186 C1orf64Q8NEQ6 169 aa7.78□□□□□ -1.16
C9orf3-219ENST00000488186 KRTAP9-2Q9BYQ4 174 aa7.77□□□□□ -1.17
C9orf3-219ENST00000488186 LINC00208Q96KT6 92 aa7.76□□□□□ -1.17
C9orf3-219ENST00000488186 FAM236AA0A1B0GUQ0 79 aa7.75□□□□□ -1.17
C9orf3-219ENST00000488186 FAM236BA0A1B0GV22 79 aa7.75□□□□□ -1.17
C9orf3-219ENST00000488186 SMIM20Q8N5G0 67 aa7.72□□□□□ -1.17
C9orf3-219ENST00000488186 H3BPC8 53 aa7.7□□□□□ -1.18
C9orf3-219ENST00000488186 TRAV7A0A075B6U4 112 aa7.66□□□□□ -1.18
C9orf3-219ENST00000488186 KRTAP3-1Q9BYR8 98 aa7.64□□□□□ -1.19
C9orf3-219ENST00000488186 KLKP1Q107X0 134 aa7.62□□□□□ -1.19
C9orf3-219ENST00000488186 S4R3F8 94 aa7.62□□□□□ -1.19
C9orf3-219ENST00000488186 KRTAP9-8Q9BYQ0 159 aa7.6□□□□□ -1.19
C9orf3-219ENST00000488186 A8MUN3 132 aa7.55□□□□□ -1.2
C9orf3-219ENST00000488186 CSAG1Q6PB30 78 aa7.53□□□□□ -1.2
C9orf3-219ENST00000488186 LCA10Q71F78 164 aa7.53□□□□□ -1.2
C9orf3-219ENST00000488186 SERP2Q8N6R1 65 aa7.53□□□□□ -1.2
C9orf3-219ENST00000488186 KRTAP10-10P60014 251 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms